EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSBOG00000023223 (Gene tree)
Gene ID: 104652219
Gene Symbol: LSM8
Alias: YJR022W
Full Name: LSM8 homolog%2C U6 small nuclear RNA associated
Gene Type: protein_coding
Species: Saimiri_boliviensis_boliviensis
Status: putative
Strand: Minus strand
Length: 9521 bases
Position: chrJH378107.1:17447692-17457212
Accession: 20471
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSBOP00000012864	LSM	PF01423.22	3.5e-19	1	1
ENSSBOP00000012870	LSM	PF01423.22	3.5e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSBOT00000029658	LSM8-201	1398	XM_010343817	ENSSBOP00000012864	96 (aa)	XP_010342119	A0A2K6SZP1
ENSSBOT00000029664	LSM8-202	225	-	ENSSBOP00000012870	74 (aa)	-	A0A2K6SZP5

Gene Model

Click here to download ENSSBOG00000023223's gene model file

Pathways

Pathway ID	Pathway Name	Source
sbq03018	RNA degradation	KEGG
sbq03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSBOG00000023223's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSBOG00000023223	LSM8	73	35.526	ENSSBOG00000034899	LSM7	72	35.526

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSBOG00000023223	LSM8	100	100.000	ENSG00000128534	LSM8	100	100.000	Homo_sapiens
ENSSBOG00000023223	LSM8	100	94.595	ENSAPOG00000008649	lsm8	100	92.708	Acanthochromis_polyacanthus
ENSSBOG00000023223	LSM8	100	100.000	ENSAMEG00000001162	LSM8	100	100.000	Ailuropoda_melanoleuca
ENSSBOG00000023223	LSM8	100	94.595	ENSACIG00000014694	lsm8	100	97.333	Amphilophus_citrinellus
ENSSBOG00000023223	LSM8	100	94.595	ENSAOCG00000013926	lsm8	100	92.708	Amphiprion_ocellaris
ENSSBOG00000023223	LSM8	100	94.595	ENSAPEG00000023502	lsm8	100	92.708	Amphiprion_percula
ENSSBOG00000023223	LSM8	100	94.595	ENSATEG00000023432	lsm8	100	97.333	Anabas_testudineus
ENSSBOG00000023223	LSM8	100	95.946	ENSAPLG00000005115	LSM8	95	91.489	Anas_platyrhynchos
ENSSBOG00000023223	LSM8	100	100.000	ENSANAG00000027771	LSM8	100	100.000	Aotus_nancymaae
ENSSBOG00000023223	LSM8	100	94.595	ENSACLG00000011253	lsm8	100	92.708	Astatotilapia_calliptera
ENSSBOG00000023223	LSM8	100	95.946	ENSAMXG00000042902	lsm8	100	94.792	Astyanax_mexicanus
ENSSBOG00000023223	LSM8	100	100.000	ENSBTAG00000012649	LSM8	100	100.000	Bos_taurus
ENSSBOG00000023223	LSM8	98	58.511	WBGene00003082	lsm-8	96	58.511	Caenorhabditis_elegans
ENSSBOG00000023223	LSM8	100	100.000	ENSCJAG00000046406	LSM8	100	100.000	Callithrix_jacchus
ENSSBOG00000023223	LSM8	99	100.000	ENSCAFG00000016459	LSM8	96	100.000	Canis_familiaris
ENSSBOG00000023223	LSM8	89	98.824	ENSCAFG00020012800	-	66	98.824	Canis_lupus_dingo
ENSSBOG00000023223	LSM8	100	100.000	ENSCAFG00020007643	-	100	100.000	Canis_lupus_dingo
ENSSBOG00000023223	LSM8	100	97.297	ENSCHIG00000014201	LSM8	90	100.000	Capra_hircus
ENSSBOG00000023223	LSM8	100	100.000	ENSTSYG00000032434	LSM8	100	100.000	Carlito_syrichta
ENSSBOG00000023223	LSM8	100	98.649	ENSCAPG00000008253	LSM8	100	98.649	Cavia_aperea
ENSSBOG00000023223	LSM8	100	100.000	ENSCPOG00000035673	LSM8	100	100.000	Cavia_porcellus
ENSSBOG00000023223	LSM8	100	100.000	ENSCCAG00000021329	LSM8	100	100.000	Cebus_capucinus
ENSSBOG00000023223	LSM8	100	100.000	ENSCATG00000045302	LSM8	100	100.000	Cercocebus_atys
ENSSBOG00000023223	LSM8	100	100.000	ENSCLAG00000003726	LSM8	100	100.000	Chinchilla_lanigera
ENSSBOG00000023223	LSM8	100	95.833	ENSCSAG00000019007	-	100	95.833	Chlorocebus_sabaeus
ENSSBOG00000023223	LSM8	100	100.000	ENSCSAG00000010802	-	100	100.000	Chlorocebus_sabaeus
ENSSBOG00000023223	LSM8	100	97.297	ENSCPBG00000008154	LSM8	87	100.000	Chrysemys_picta_bellii
ENSSBOG00000023223	LSM8	100	77.027	ENSCING00000024877	-	100	75.000	Ciona_intestinalis
ENSSBOG00000023223	LSM8	100	100.000	ENSCANG00000040728	LSM8	100	100.000	Colobus_angolensis_palliatus
ENSSBOG00000023223	LSM8	100	100.000	ENSCGRG00001000450	Lsm8	100	100.000	Cricetulus_griseus_chok1gshd
ENSSBOG00000023223	LSM8	100	97.297	ENSCGRG00000005587	Lsm8	100	100.000	Cricetulus_griseus_crigri
ENSSBOG00000023223	LSM8	97	95.833	ENSCSEG00000004164	lsm8	100	81.250	Cynoglossus_semilaevis
ENSSBOG00000023223	LSM8	100	93.243	ENSCVAG00000020547	lsm8	100	91.667	Cyprinodon_variegatus
ENSSBOG00000023223	LSM8	100	94.595	ENSDARG00000091656	lsm8	100	91.667	Danio_rerio
ENSSBOG00000023223	LSM8	100	100.000	ENSDNOG00000034613	LSM8	100	100.000	Dasypus_novemcinctus
ENSSBOG00000023223	LSM8	100	100.000	ENSDORG00000027868	Lsm8	100	100.000	Dipodomys_ordii
ENSSBOG00000023223	LSM8	100	71.622	FBgn0035271	CG2021	99	69.149	Drosophila_melanogaster
ENSSBOG00000023223	LSM8	100	98.958	ENSETEG00000011594	LSM8	100	98.958	Echinops_telfairi
ENSSBOG00000023223	LSM8	100	94.595	ENSEBUG00000012017	lsm8	100	94.595	Eptatretus_burgeri
ENSSBOG00000023223	LSM8	100	100.000	ENSEASG00005008932	LSM8	62	100.000	Equus_asinus_asinus
ENSSBOG00000023223	LSM8	100	97.297	ENSECAG00000024025	LSM8	77	100.000	Equus_caballus
ENSSBOG00000023223	LSM8	100	91.892	ENSELUG00000010138	lsm8	100	91.667	Esox_lucius
ENSSBOG00000023223	LSM8	100	100.000	ENSFCAG00000036620	-	100	100.000	Felis_catus
ENSSBOG00000023223	LSM8	85	74.390	ENSFCAG00000044794	-	83	74.390	Felis_catus
ENSSBOG00000023223	LSM8	100	98.958	ENSFALG00000010023	LSM8	100	98.958	Ficedula_albicollis
ENSSBOG00000023223	LSM8	100	100.000	ENSFDAG00000019530	LSM8	100	100.000	Fukomys_damarensis
ENSSBOG00000023223	LSM8	100	94.595	ENSFHEG00000013729	lsm8	100	92.708	Fundulus_heteroclitus
ENSSBOG00000023223	LSM8	100	98.958	ENSGALG00000009110	LSM8	100	98.958	Gallus_gallus
ENSSBOG00000023223	LSM8	100	93.243	ENSGAFG00000001135	lsm8	100	91.667	Gambusia_affinis
ENSSBOG00000023223	LSM8	100	100.000	ENSGAGG00000017366	LSM8	100	100.000	Gopherus_agassizii
ENSSBOG00000023223	LSM8	100	100.000	ENSGGOG00000041883	LSM8	100	100.000	Gorilla_gorilla
ENSSBOG00000023223	LSM8	100	94.595	ENSHBUG00000003646	lsm8	100	92.708	Haplochromis_burtoni
ENSSBOG00000023223	LSM8	71	100.000	ENSHGLG00000001988	-	99	100.000	Heterocephalus_glaber_female
ENSSBOG00000023223	LSM8	100	93.750	ENSHGLG00000019782	-	100	93.750	Heterocephalus_glaber_female
ENSSBOG00000023223	LSM8	100	95.833	ENSHGLG00100012166	-	100	95.833	Heterocephalus_glaber_male
ENSSBOG00000023223	LSM8	99	96.842	ENSHGLG00100003934	-	95	96.842	Heterocephalus_glaber_male
ENSSBOG00000023223	LSM8	100	93.243	ENSHCOG00000005037	lsm8	100	91.667	Hippocampus_comes
ENSSBOG00000023223	LSM8	100	95.946	ENSIPUG00000019811	NAA38	100	94.792	Ictalurus_punctatus
ENSSBOG00000023223	LSM8	100	100.000	ENSSTOG00000009039	LSM8	100	100.000	Ictidomys_tridecemlineatus
ENSSBOG00000023223	LSM8	100	83.784	ENSSTOG00000034801	-	81	87.500	Ictidomys_tridecemlineatus
ENSSBOG00000023223	LSM8	100	100.000	ENSJJAG00000009031	Lsm8	99	100.000	Jaculus_jaculus
ENSSBOG00000023223	LSM8	100	94.595	ENSKMAG00000018983	lsm8	100	92.708	Kryptolebias_marmoratus
ENSSBOG00000023223	LSM8	100	94.792	ENSLACG00000010231	LSM8	100	94.792	Latimeria_chalumnae
ENSSBOG00000023223	LSM8	100	94.595	ENSLOCG00000015580	lsm8	100	93.750	Lepisosteus_oculatus
ENSSBOG00000023223	LSM8	100	98.969	ENSLAFG00000011242	LSM8	100	98.969	Loxodonta_africana
ENSSBOG00000023223	LSM8	100	95.833	ENSMFAG00000013044	-	100	95.833	Macaca_fascicularis
ENSSBOG00000023223	LSM8	100	100.000	ENSMFAG00000035798	LSM8	100	100.000	Macaca_fascicularis
ENSSBOG00000023223	LSM8	100	100.000	ENSMMUG00000046401	LSM8	100	100.000	Macaca_mulatta
ENSSBOG00000023223	LSM8	100	100.000	ENSMNEG00000036764	-	100	100.000	Macaca_nemestrina
ENSSBOG00000023223	LSM8	100	93.243	ENSMNEG00000011141	-	100	96.000	Macaca_nemestrina
ENSSBOG00000023223	LSM8	100	100.000	ENSMLEG00000035828	-	100	100.000	Mandrillus_leucophaeus
ENSSBOG00000023223	LSM8	100	84.375	ENSMLEG00000039324	-	100	84.375	Mandrillus_leucophaeus
ENSSBOG00000023223	LSM8	100	94.595	ENSMAMG00000018839	lsm8	100	97.333	Mastacembelus_armatus
ENSSBOG00000023223	LSM8	100	94.595	ENSMZEG00005019138	lsm8	100	92.708	Maylandia_zebra
ENSSBOG00000023223	LSM8	100	98.958	ENSMGAG00000008808	LSM8	100	98.958	Meleagris_gallopavo
ENSSBOG00000023223	LSM8	100	92.708	ENSMAUG00000015721	-	100	92.708	Mesocricetus_auratus
ENSSBOG00000023223	LSM8	100	91.892	ENSMAUG00000020287	-	100	91.892	Mesocricetus_auratus
ENSSBOG00000023223	LSM8	100	80.208	ENSMAUG00000015356	-	100	80.208	Mesocricetus_auratus
ENSSBOG00000023223	LSM8	100	100.000	ENSMICG00000042730	LSM8	100	100.000	Microcebus_murinus
ENSSBOG00000023223	LSM8	100	100.000	ENSMOCG00000001688	Lsm8	100	100.000	Microtus_ochrogaster
ENSSBOG00000023223	LSM8	100	94.595	ENSMMOG00000006046	lsm8	100	97.333	Mola_mola
ENSSBOG00000023223	LSM8	97	83.784	ENSMODG00000015729	LSM8	96	86.667	Monodelphis_domestica
ENSSBOG00000023223	LSM8	100	94.595	ENSMALG00000000405	lsm8	100	93.750	Monopterus_albus
ENSSBOG00000023223	LSM8	100	100.000	MGP_CAROLIEiJ_G0028125	-	100	100.000	Mus_caroli
ENSSBOG00000023223	LSM8	100	100.000	ENSMUSG00000044155	Lsm8	100	100.000	Mus_musculus
ENSSBOG00000023223	LSM8	100	100.000	MGP_PahariEiJ_G0021881	Lsm8	100	100.000	Mus_pahari
ENSSBOG00000023223	LSM8	100	100.000	MGP_SPRETEiJ_G0029125	-	100	100.000	Mus_spretus
ENSSBOG00000023223	LSM8	100	100.000	ENSMLUG00000006837	-	100	100.000	Myotis_lucifugus
ENSSBOG00000023223	LSM8	100	98.958	ENSMLUG00000027762	-	100	98.958	Myotis_lucifugus
ENSSBOG00000023223	LSM8	100	100.000	ENSNGAG00000016554	Lsm8	100	100.000	Nannospalax_galili
ENSSBOG00000023223	LSM8	100	94.595	ENSNBRG00000014441	lsm8	100	92.708	Neolamprologus_brichardi
ENSSBOG00000023223	LSM8	100	100.000	ENSNLEG00000011768	LSM8	100	100.000	Nomascus_leucogenys
ENSSBOG00000023223	LSM8	100	88.542	ENSMEUG00000007801	LSM8	100	88.542	Notamacropus_eugenii
ENSSBOG00000023223	LSM8	100	97.297	ENSOPRG00000014809	LSM8	100	100.000	Ochotona_princeps
ENSSBOG00000023223	LSM8	100	100.000	ENSODEG00000000418	-	100	100.000	Octodon_degus
ENSSBOG00000023223	LSM8	90	82.558	ENSODEG00000020290	-	100	82.558	Octodon_degus
ENSSBOG00000023223	LSM8	100	98.958	ENSOANG00000014536	LSM8	100	98.958	Ornithorhynchus_anatinus
ENSSBOG00000023223	LSM8	100	98.969	ENSOCUG00000017359	LSM8	100	98.969	Oryctolagus_cuniculus
ENSSBOG00000023223	LSM8	97	97.222	ENSORLG00000017432	lsm8	100	82.292	Oryzias_latipes
ENSSBOG00000023223	LSM8	97	97.222	ENSORLG00020004376	lsm8	100	82.292	Oryzias_latipes_hni
ENSSBOG00000023223	LSM8	100	94.595	ENSORLG00015003757	lsm8	100	92.708	Oryzias_latipes_hsok
ENSSBOG00000023223	LSM8	93	97.101	ENSOMEG00000022509	lsm8	100	81.250	Oryzias_melastigma
ENSSBOG00000023223	LSM8	100	100.000	ENSOGAG00000013377	LSM8	100	100.000	Otolemur_garnettii
ENSSBOG00000023223	LSM8	100	100.000	ENSOARG00000017974	LSM8	100	100.000	Ovis_aries
ENSSBOG00000023223	LSM8	100	97.297	ENSPPAG00000043228	-	100	100.000	Pan_paniscus
ENSSBOG00000023223	LSM8	100	100.000	ENSPPRG00000006444	LSM8	100	100.000	Panthera_pardus
ENSSBOG00000023223	LSM8	100	100.000	ENSPTIG00000004722	LSM8	100	100.000	Panthera_tigris_altaica
ENSSBOG00000023223	LSM8	100	97.297	ENSPTRG00000046596	-	100	100.000	Pan_troglodytes
ENSSBOG00000023223	LSM8	100	100.000	ENSPANG00000035470	-	100	100.000	Papio_anubis
ENSSBOG00000023223	LSM8	100	93.750	ENSPANG00000019395	-	100	93.750	Papio_anubis
ENSSBOG00000023223	LSM8	100	94.595	ENSPKIG00000006092	lsm8	86	97.647	Paramormyrops_kingsleyae
ENSSBOG00000023223	LSM8	100	97.297	ENSPSIG00000017054	LSM8	100	100.000	Pelodiscus_sinensis
ENSSBOG00000023223	LSM8	100	94.595	ENSPMGG00000016442	lsm8	100	97.333	Periophthalmus_magnuspinnatus
ENSSBOG00000023223	LSM8	100	98.649	ENSPEMG00000009153	Lsm8	100	98.649	Peromyscus_maniculatus_bairdii
ENSSBOG00000023223	LSM8	97	100.000	ENSPCIG00000021467	LSM8	98	100.000	Phascolarctos_cinereus
ENSSBOG00000023223	LSM8	100	93.243	ENSPFOG00000012340	lsm8	100	91.667	Poecilia_formosa
ENSSBOG00000023223	LSM8	100	93.243	ENSPLAG00000000516	lsm8	89	94.118	Poecilia_latipinna
ENSSBOG00000023223	LSM8	100	93.243	ENSPMEG00000022567	lsm8	100	91.667	Poecilia_mexicana
ENSSBOG00000023223	LSM8	99	85.000	ENSPREG00000005527	lsm8	72	85.000	Poecilia_reticulata
ENSSBOG00000023223	LSM8	100	100.000	ENSPPYG00000017942	LSM8	100	100.000	Pongo_abelii
ENSSBOG00000023223	LSM8	100	100.000	ENSPCOG00000003309	-	100	100.000	Propithecus_coquereli
ENSSBOG00000023223	LSM8	99	77.895	ENSPCOG00000017982	-	99	77.895	Propithecus_coquereli
ENSSBOG00000023223	LSM8	100	95.946	ENSPVAG00000000990	LSM8	100	98.824	Pteropus_vampyrus
ENSSBOG00000023223	LSM8	100	94.595	ENSPNYG00000011448	lsm8	100	92.708	Pundamilia_nyererei
ENSSBOG00000023223	LSM8	100	95.946	ENSPNAG00000010252	lsm8	100	94.792	Pygocentrus_nattereri
ENSSBOG00000023223	LSM8	100	100.000	ENSRNOG00000058677	Lsm8	100	100.000	Rattus_norvegicus
ENSSBOG00000023223	LSM8	100	100.000	ENSRBIG00000032851	LSM8	100	100.000	Rhinopithecus_bieti
ENSSBOG00000023223	LSM8	100	100.000	ENSRROG00000039618	LSM8	100	100.000	Rhinopithecus_roxellana
ENSSBOG00000023223	LSM8	100	100.000	ENSSHAG00000018435	-	100	100.000	Sarcophilus_harrisii
ENSSBOG00000023223	LSM8	100	93.243	ENSSFOG00015004412	lsm8	100	91.667	Scleropages_formosus
ENSSBOG00000023223	LSM8	100	94.595	ENSSMAG00000009458	lsm8	100	97.333	Scophthalmus_maximus
ENSSBOG00000023223	LSM8	100	94.595	ENSSDUG00000014702	lsm8	100	92.708	Seriola_dumerili
ENSSBOG00000023223	LSM8	100	94.595	ENSSLDG00000016870	lsm8	100	97.333	Seriola_lalandi_dorsalis
ENSSBOG00000023223	LSM8	97	100.000	ENSSARG00000009628	-	100	100.000	Sorex_araneus
ENSSBOG00000023223	LSM8	100	100.000	ENSSPUG00000017419	LSM8	100	100.000	Sphenodon_punctatus
ENSSBOG00000023223	LSM8	100	94.595	ENSSPAG00000021422	lsm8	100	92.708	Stegastes_partitus
ENSSBOG00000023223	LSM8	100	100.000	ENSSSCG00000021652	LSM8	100	100.000	Sus_scrofa
ENSSBOG00000023223	LSM8	100	97.917	ENSTGUG00000004730	-	100	97.917	Taeniopygia_guttata
ENSSBOG00000023223	LSM8	100	96.875	ENSTGUG00000016823	-	100	96.875	Taeniopygia_guttata
ENSSBOG00000023223	LSM8	100	94.595	ENSTRUG00000025192	lsm8	100	92.708	Takifugu_rubripes
ENSSBOG00000023223	LSM8	100	94.595	ENSTNIG00000002864	lsm8	100	92.708	Tetraodon_nigroviridis
ENSSBOG00000023223	LSM8	100	100.000	ENSTTRG00000001023	LSM8	100	100.000	Tursiops_truncatus
ENSSBOG00000023223	LSM8	100	97.297	ENSUAMG00000006943	-	92	96.591	Ursus_americanus
ENSSBOG00000023223	LSM8	100	97.297	ENSUMAG00000003073	LSM8	94	96.591	Ursus_maritimus
ENSSBOG00000023223	LSM8	100	100.000	ENSVPAG00000001530	LSM8	100	100.000	Vicugna_pacos
ENSSBOG00000023223	LSM8	100	94.595	ENSVVUG00000013248	-	82	97.333	Vulpes_vulpes
ENSSBOG00000023223	LSM8	100	94.595	ENSXETG00000021829	lsm8	92	96.629	Xenopus_tropicalis
ENSSBOG00000023223	LSM8	100	91.892	ENSXCOG00000012938	lsm8	100	89.583	Xiphophorus_couchianus
ENSSBOG00000023223	LSM8	100	93.243	ENSXMAG00000025919	lsm8	100	91.667	Xiphophorus_maculatus