EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSBOG00000023454 (Gene tree)
Gene ID: 101035342
Gene Symbol: SMG7
Alias: C1orf16|EST1C|KIAA0250|SGA56M|SMG-7
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Saimiri_boliviensis_boliviensis
Status: putative
Strand: Minus strand
Length: 83995 bases
Position: chrJH378118.1:24655666-24739660
Accession: 16792
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSBOP00000013815	EST1	PF10374.9	9.5e-25	1	1
ENSSBOP00000013805	EST1	PF10374.9	1e-24	1	1
ENSSBOP00000013829	EST1	PF10374.9	1e-24	1	1
ENSSBOP00000013832	EST1	PF10374.9	2.5e-22	1	1
ENSSBOP00000013815	EST1_DNA_bind	PF10373.9	1.1e-55	1	1
ENSSBOP00000013805	EST1_DNA_bind	PF10373.9	1.2e-55	1	1
ENSSBOP00000013829	EST1_DNA_bind	PF10373.9	1.2e-55	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSBOT00000030625	SMG7-203	6012	-	ENSSBOP00000013829	1144 (aa)	-	A0A2K6T2G1
ENSSBOT00000030633	SMG7-205	219	-	ENSSBOP00000013836	73 (aa)	-	A0A2K6T2L0
ENSSBOT00000030601	SMG7-201	8059	XM_010336043	ENSSBOP00000013805	1140 (aa)	XP_010334345	A0A2K6T2B3
ENSSBOT00000030629	SMG7-204	597	-	ENSSBOP00000013832	184 (aa)	-	A0A2K6T2E0
ENSSBOT00000030610	SMG7-202	7909	XM_003925299	ENSSBOP00000013815	1090 (aa)	XP_003925348	A0A2K6T2C3

Gene Model

Click here to download ENSSBOG00000023454's gene model file

Pathways

Pathway ID	Pathway Name	Source
sbq03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSBOG00000023454's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSBOG00000023454	SMG7	100	99.457	ENSG00000116698	SMG7	100	99.457	Homo_sapiens
ENSSBOG00000023454	SMG7	85	92.994	ENSAPOG00000009611	smg7	95	71.710	Acanthochromis_polyacanthus
ENSSBOG00000023454	SMG7	100	96.856	ENSAMEG00000002357	SMG7	100	96.856	Ailuropoda_melanoleuca
ENSSBOG00000023454	SMG7	70	94.574	ENSACIG00000015152	smg7	97	67.123	Amphilophus_citrinellus
ENSSBOG00000023454	SMG7	88	93.168	ENSAOCG00000013538	smg7	99	64.971	Amphiprion_ocellaris
ENSSBOG00000023454	SMG7	86	94.340	ENSAPEG00000007851	smg7	99	64.975	Amphiprion_percula
ENSSBOG00000023454	SMG7	86	94.340	ENSATEG00000006931	smg7	99	64.756	Anabas_testudineus
ENSSBOG00000023454	SMG7	100	85.814	ENSAPLG00000015811	SMG7	100	85.639	Anas_platyrhynchos
ENSSBOG00000023454	SMG7	100	87.619	ENSACAG00000014989	SMG7	100	85.046	Anolis_carolinensis
ENSSBOG00000023454	SMG7	100	99.126	ENSANAG00000028114	SMG7	100	95.278	Aotus_nancymaae
ENSSBOG00000023454	SMG7	86	94.340	ENSACLG00000022079	smg7	99	64.822	Astatotilapia_calliptera
ENSSBOG00000023454	SMG7	86	93.711	ENSAMXG00000020809	smg7	99	67.140	Astyanax_mexicanus
ENSSBOG00000023454	SMG7	99	96.117	ENSBTAG00000008003	SMG7	97	96.117	Bos_taurus
ENSSBOG00000023454	SMG7	100	99.038	ENSCJAG00000005135	SMG7	97	99.038	Callithrix_jacchus
ENSSBOG00000023454	SMG7	99	97.264	ENSCAFG00000013276	SMG7	97	97.264	Canis_familiaris
ENSSBOG00000023454	SMG7	100	97.118	ENSCAFG00020015475	SMG7	97	97.753	Canis_lupus_dingo
ENSSBOG00000023454	SMG7	99	96.120	ENSCHIG00000018192	SMG7	99	96.120	Capra_hircus
ENSSBOG00000023454	SMG7	100	97.031	ENSTSYG00000002667	SMG7	100	97.031	Carlito_syrichta
ENSSBOG00000023454	SMG7	99	97.087	ENSCPOG00000008906	SMG7	99	96.293	Cavia_porcellus
ENSSBOG00000023454	SMG7	100	99.388	ENSCCAG00000028596	SMG7	100	99.388	Cebus_capucinus
ENSSBOG00000023454	SMG7	100	98.777	ENSCATG00000011063	SMG7	100	98.777	Cercocebus_atys
ENSSBOG00000023454	SMG7	100	96.845	ENSCLAG00000010751	SMG7	100	96.845	Chinchilla_lanigera
ENSSBOG00000023454	SMG7	99	98.500	ENSCSAG00000012654	SMG7	97	98.500	Chlorocebus_sabaeus
ENSSBOG00000023454	SMG7	92	89.207	ENSCHOG00000010522	SMG7	93	89.589	Choloepus_hoffmanni
ENSSBOG00000023454	SMG7	100	92.080	ENSCPBG00000015724	SMG7	100	88.739	Chrysemys_picta_bellii
ENSSBOG00000023454	SMG7	85	52.147	ENSCING00000006953	-	94	53.746	Ciona_intestinalis
ENSSBOG00000023454	SMG7	100	98.865	ENSCANG00000015680	SMG7	100	98.865	Colobus_angolensis_palliatus
ENSSBOG00000023454	SMG7	100	95.706	ENSCGRG00001013705	Smg7	100	95.706	Cricetulus_griseus_chok1gshd
ENSSBOG00000023454	SMG7	99	95.587	ENSCGRG00000018401	Smg7	99	95.587	Cricetulus_griseus_crigri
ENSSBOG00000023454	SMG7	83	90.789	ENSCSEG00000007392	-	88	89.103	Cynoglossus_semilaevis
ENSSBOG00000023454	SMG7	80	88.000	ENSCVAG00000011842	smg7	98	68.000	Cyprinodon_variegatus
ENSSBOG00000023454	SMG7	86	94.969	ENSDARG00000060767	smg7	99	66.722	Danio_rerio
ENSSBOG00000023454	SMG7	100	96.231	ENSDORG00000007331	Smg7	100	96.231	Dipodomys_ordii
ENSSBOG00000023454	SMG7	97	96.558	ENSETEG00000002654	SMG7	100	96.558	Echinops_telfairi
ENSSBOG00000023454	SMG7	100	97.809	ENSEASG00005006524	SMG7	100	97.809	Equus_asinus_asinus
ENSSBOG00000023454	SMG7	100	97.897	ENSECAG00000004313	SMG7	100	97.897	Equus_caballus
ENSSBOG00000023454	SMG7	97	95.747	ENSEEUG00000002024	SMG7	94	95.747	Erinaceus_europaeus
ENSSBOG00000023454	SMG7	86	94.340	ENSELUG00000010293	smg7	99	66.333	Esox_lucius
ENSSBOG00000023454	SMG7	100	97.283	ENSFCAG00000010900	SMG7	100	97.699	Felis_catus
ENSSBOG00000023454	SMG7	100	86.186	ENSFALG00000003047	SMG7	98	86.099	Ficedula_albicollis
ENSSBOG00000023454	SMG7	99	96.400	ENSFDAG00000012121	SMG7	99	96.791	Fukomys_damarensis
ENSSBOG00000023454	SMG7	88	90.062	ENSFHEG00000011073	smg7	99	62.500	Fundulus_heteroclitus
ENSSBOG00000023454	SMG7	88	90.683	ENSGMOG00000004916	smg7	92	67.737	Gadus_morhua
ENSSBOG00000023454	SMG7	89	97.561	ENSGALG00000004667	SMG7	100	86.089	Gallus_gallus
ENSSBOG00000023454	SMG7	94	85.876	ENSGAFG00000019000	smg7	99	62.889	Gambusia_affinis
ENSSBOG00000023454	SMG7	88	91.925	ENSGACG00000001634	smg7	99	65.035	Gasterosteus_aculeatus
ENSSBOG00000023454	SMG7	83	99.342	ENSGAGG00000024208	-	81	99.342	Gopherus_agassizii
ENSSBOG00000023454	SMG7	100	98.515	ENSGGOG00000002342	SMG7	100	98.515	Gorilla_gorilla
ENSSBOG00000023454	SMG7	88	93.168	ENSHBUG00000003726	smg7	95	72.081	Haplochromis_burtoni
ENSSBOG00000023454	SMG7	98	96.881	ENSHGLG00000009353	SMG7	100	96.881	Heterocephalus_glaber_female
ENSSBOG00000023454	SMG7	98	95.187	ENSHGLG00100009637	-	100	95.187	Heterocephalus_glaber_male
ENSSBOG00000023454	SMG7	100	89.132	ENSHGLG00100004878	-	100	89.132	Heterocephalus_glaber_male
ENSSBOG00000023454	SMG7	95	78.977	ENSHCOG00000012804	-	88	84.242	Hippocampus_comes
ENSSBOG00000023454	SMG7	86	93.711	ENSIPUG00000016997	smg7	99	67.674	Ictalurus_punctatus
ENSSBOG00000023454	SMG7	100	97.809	ENSSTOG00000000401	SMG7	100	97.809	Ictidomys_tridecemlineatus
ENSSBOG00000023454	SMG7	100	95.614	ENSJJAG00000012351	Smg7	100	95.614	Jaculus_jaculus
ENSSBOG00000023454	SMG7	95	86.207	ENSJJAG00000000309	-	98	86.207	Jaculus_jaculus
ENSSBOG00000023454	SMG7	72	93.182	ENSKMAG00000004900	smg7	96	70.000	Kryptolebias_marmoratus
ENSSBOG00000023454	SMG7	84	92.903	ENSLBEG00000002983	smg7	99	64.874	Labrus_bergylta
ENSSBOG00000023454	SMG7	52	62.667	ENSLBEG00000005220	-	75	64.273	Labrus_bergylta
ENSSBOG00000023454	SMG7	86	94.969	ENSLACG00000000972	SMG7	99	75.716	Latimeria_chalumnae
ENSSBOG00000023454	SMG7	88	92.683	ENSLOCG00000002010	smg7	99	67.718	Lepisosteus_oculatus
ENSSBOG00000023454	SMG7	99	97.261	ENSLAFG00000008186	SMG7	99	97.261	Loxodonta_africana
ENSSBOG00000023454	SMG7	100	98.690	ENSMFAG00000031653	SMG7	100	98.690	Macaca_fascicularis
ENSSBOG00000023454	SMG7	100	98.777	ENSMMUG00000018458	SMG7	97	98.777	Macaca_mulatta
ENSSBOG00000023454	SMG7	100	98.777	ENSMNEG00000034798	SMG7	100	98.777	Macaca_nemestrina
ENSSBOG00000023454	SMG7	100	98.777	ENSMLEG00000037170	SMG7	100	98.777	Mandrillus_leucophaeus
ENSSBOG00000023454	SMG7	88	92.547	ENSMAMG00000018733	smg7	85	63.959	Mastacembelus_armatus
ENSSBOG00000023454	SMG7	86	94.340	ENSMZEG00005015247	smg7	99	64.822	Maylandia_zebra
ENSSBOG00000023454	SMG7	98	85.031	ENSMGAG00000001561	SMG7	98	85.791	Meleagris_gallopavo
ENSSBOG00000023454	SMG7	100	96.144	ENSMAUG00000019484	Smg7	100	96.144	Mesocricetus_auratus
ENSSBOG00000023454	SMG7	99	97.970	ENSMICG00000007145	SMG7	99	97.970	Microcebus_murinus
ENSSBOG00000023454	SMG7	100	95.968	ENSMOCG00000020748	Smg7	100	95.968	Microtus_ochrogaster
ENSSBOG00000023454	SMG7	85	90.446	ENSMMOG00000001524	smg7	99	63.281	Mola_mola
ENSSBOG00000023454	SMG7	86	96.226	ENSMODG00000007139	SMG7	99	89.184	Monodelphis_domestica
ENSSBOG00000023454	SMG7	87	93.125	ENSMALG00000000061	smg7	91	68.159	Monopterus_albus
ENSSBOG00000023454	SMG7	100	95.706	MGP_CAROLIEiJ_G0014704	Smg7	100	95.443	Mus_caroli
ENSSBOG00000023454	SMG7	100	95.618	ENSMUSG00000042772	Smg7	100	95.618	Mus_musculus
ENSSBOG00000023454	SMG7	100	95.618	MGP_PahariEiJ_G0027940	Smg7	100	95.618	Mus_pahari
ENSSBOG00000023454	SMG7	100	95.706	MGP_SPRETEiJ_G0015511	Smg7	100	95.706	Mus_spretus
ENSSBOG00000023454	SMG7	98	97.237	ENSMPUG00000011732	SMG7	97	97.237	Mustela_putorius_furo
ENSSBOG00000023454	SMG7	99	96.558	ENSMLUG00000015417	SMG7	99	96.558	Myotis_lucifugus
ENSSBOG00000023454	SMG7	99	96.117	ENSNGAG00000009836	Smg7	99	95.587	Nannospalax_galili
ENSSBOG00000023454	SMG7	98	59.703	ENSNBRG00000024343	smg7	96	70.000	Neolamprologus_brichardi
ENSSBOG00000023454	SMG7	100	98.777	ENSNLEG00000018018	SMG7	100	98.777	Nomascus_leucogenys
ENSSBOG00000023454	SMG7	71	93.496	ENSMEUG00000004681	SMG7	77	86.611	Notamacropus_eugenii
ENSSBOG00000023454	SMG7	85	96.178	ENSOPRG00000013942	SMG7	96	84.475	Ochotona_princeps
ENSSBOG00000023454	SMG7	100	96.933	ENSODEG00000010390	SMG7	100	96.933	Octodon_degus
ENSSBOG00000023454	SMG7	86	94.340	ENSONIG00000000277	smg7	99	64.230	Oreochromis_niloticus
ENSSBOG00000023454	SMG7	98	91.135	ENSOANG00000000994	SMG7	100	91.046	Ornithorhynchus_anatinus
ENSSBOG00000023454	SMG7	99	90.026	ENSOCUG00000005887	SMG7	92	90.203	Oryctolagus_cuniculus
ENSSBOG00000023454	SMG7	93	85.965	ENSORLG00000007314	smg7	77	85.965	Oryzias_latipes
ENSSBOG00000023454	SMG7	88	90.683	ENSORLG00020015779	smg7	78	85.057	Oryzias_latipes_hni
ENSSBOG00000023454	SMG7	88	90.683	ENSORLG00015012289	smg7	97	64.617	Oryzias_latipes_hsok
ENSSBOG00000023454	SMG7	88	90.683	ENSOMEG00000002328	smg7	99	62.209	Oryzias_melastigma
ENSSBOG00000023454	SMG7	97	95.558	ENSOGAG00000003107	SMG7	94	95.467	Otolemur_garnettii
ENSSBOG00000023454	SMG7	99	95.940	ENSOARG00000001352	SMG7	100	95.899	Ovis_aries
ENSSBOG00000023454	SMG7	100	98.777	ENSPPAG00000031619	SMG7	100	98.777	Pan_paniscus
ENSSBOG00000023454	SMG7	99	97.352	ENSPPRG00000011222	SMG7	97	97.352	Panthera_pardus
ENSSBOG00000023454	SMG7	100	97.467	ENSPTIG00000007242	SMG7	100	97.467	Panthera_tigris_altaica
ENSSBOG00000023454	SMG7	100	98.777	ENSPTRG00000001764	SMG7	100	98.777	Pan_troglodytes
ENSSBOG00000023454	SMG7	99	98.676	ENSPANG00000004520	SMG7	97	98.676	Papio_anubis
ENSSBOG00000023454	SMG7	86	92.405	ENSPKIG00000007242	smg7	99	67.500	Paramormyrops_kingsleyae
ENSSBOG00000023454	SMG7	99	92.145	ENSPSIG00000012201	SMG7	99	91.880	Pelodiscus_sinensis
ENSSBOG00000023454	SMG7	85	85.987	ENSPMGG00000002179	-	90	83.951	Periophthalmus_magnuspinnatus
ENSSBOG00000023454	SMG7	59	56.633	ENSPMGG00000021833	smg7	89	56.633	Periophthalmus_magnuspinnatus
ENSSBOG00000023454	SMG7	100	94.829	ENSPEMG00000011315	Smg7	100	94.829	Peromyscus_maniculatus_bairdii
ENSSBOG00000023454	SMG7	100	93.455	ENSPCIG00000003786	SMG7	100	90.404	Phascolarctos_cinereus
ENSSBOG00000023454	SMG7	86	91.824	ENSPFOG00000019219	smg7	99	63.162	Poecilia_formosa
ENSSBOG00000023454	SMG7	86	91.824	ENSPLAG00000001446	smg7	99	63.094	Poecilia_latipinna
ENSSBOG00000023454	SMG7	88	90.683	ENSPMEG00000005218	smg7	99	62.321	Poecilia_mexicana
ENSSBOG00000023454	SMG7	88	90.062	ENSPREG00000019039	smg7	91	60.265	Poecilia_reticulata
ENSSBOG00000023454	SMG7	100	94.811	ENSPPYG00000000427	SMG7	100	94.811	Pongo_abelii
ENSSBOG00000023454	SMG7	95	85.424	ENSPCAG00000008360	SMG7	95	84.608	Procavia_capensis
ENSSBOG00000023454	SMG7	100	97.984	ENSPCOG00000011996	SMG7	100	97.984	Propithecus_coquereli
ENSSBOG00000023454	SMG7	88	95.652	ENSPVAG00000000851	SMG7	89	91.396	Pteropus_vampyrus
ENSSBOG00000023454	SMG7	86	94.340	ENSPNYG00000007643	smg7	99	64.599	Pundamilia_nyererei
ENSSBOG00000023454	SMG7	86	94.340	ENSPNAG00000011374	smg7	98	69.697	Pygocentrus_nattereri
ENSSBOG00000023454	SMG7	100	95.709	ENSRNOG00000027962	Smg7	100	96.561	Rattus_norvegicus
ENSSBOG00000023454	SMG7	100	98.865	ENSRBIG00000036316	SMG7	100	98.865	Rhinopithecus_bieti
ENSSBOG00000023454	SMG7	100	98.865	ENSRROG00000035719	SMG7	100	98.865	Rhinopithecus_roxellana
ENSSBOG00000023454	SMG7	100	89.201	ENSSHAG00000013147	SMG7	100	88.938	Sarcophilus_harrisii
ENSSBOG00000023454	SMG7	86	93.082	ENSSFOG00015017252	smg7	99	75.789	Scleropages_formosus
ENSSBOG00000023454	SMG7	88	93.168	ENSSMAG00000006067	smg7	99	64.979	Scophthalmus_maximus
ENSSBOG00000023454	SMG7	86	94.340	ENSSDUG00000017543	smg7	99	64.426	Seriola_dumerili
ENSSBOG00000023454	SMG7	88	93.210	ENSSLDG00000003750	-	97	93.210	Seriola_lalandi_dorsalis
ENSSBOG00000023454	SMG7	100	86.249	ENSSPUG00000002064	SMG7	99	86.926	Sphenodon_punctatus
ENSSBOG00000023454	SMG7	89	85.366	ENSSPAG00000008733	smg7	97	68.037	Stegastes_partitus
ENSSBOG00000023454	SMG7	100	97.371	ENSSSCG00000015558	SMG7	100	97.371	Sus_scrofa
ENSSBOG00000023454	SMG7	100	85.230	ENSTGUG00000003928	SMG7	100	86.067	Taeniopygia_guttata
ENSSBOG00000023454	SMG7	92	83.529	ENSTRUG00000003612	-	92	83.529	Takifugu_rubripes
ENSSBOG00000023454	SMG7	86	89.375	ENSTNIG00000002802	smg7	99	64.219	Tetraodon_nigroviridis
ENSSBOG00000023454	SMG7	78	94.915	ENSTBEG00000003220	SMG7	75	94.915	Tupaia_belangeri
ENSSBOG00000023454	SMG7	96	97.078	ENSTTRG00000014778	SMG7	94	97.078	Tursiops_truncatus
ENSSBOG00000023454	SMG7	96	97.426	ENSUAMG00000017473	SMG7	100	97.426	Ursus_americanus
ENSSBOG00000023454	SMG7	100	93.450	ENSUMAG00000016389	SMG7	100	97.426	Ursus_maritimus
ENSSBOG00000023454	SMG7	100	97.458	ENSVVUG00000008976	SMG7	100	97.583	Vulpes_vulpes
ENSSBOG00000023454	SMG7	89	91.463	ENSXETG00000012528	smg7	100	69.384	Xenopus_tropicalis
ENSSBOG00000023454	SMG7	86	92.453	ENSXMAG00000007123	smg7	99	63.053	Xiphophorus_maculatus