EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSBOG00000023632 (Gene tree)
Gene ID: -
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Saimiri_boliviensis_boliviensis
Status: putative
Strand: Plus strand
Length: 22358 bases
Position: chrJH378262.1:2969617-2991974
Accession: 9962
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSBOP00000013846	UPF1_Zn_bind	PF09416.10	9e-75	1	1
ENSSBOP00000013846	ResIII	PF04851.15	3.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSBOT00000030643	UPF1-201	3279	XM_010330158	ENSSBOP00000013846	1092 (aa)	XP_010328460	A0A2K6T2M0
ENSSBOT00000030682	UPF1-202	4413	-	ENSSBOP00000013885	373 (aa)	-	A0A2K6T2J4

Gene Model

Click here to download ENSSBOG00000023632's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSBOG00000023632's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSBOG00000023632	UPF1	98	98.419	ENSG00000005007	UPF1	95	98.419	Homo_sapiens
ENSSBOG00000023632	UPF1	96	94.084	ENSAPOG00000010916	-	94	94.179	Acanthochromis_polyacanthus
ENSSBOG00000023632	UPF1	96	92.083	ENSAPOG00000023773	upf1	95	92.271	Acanthochromis_polyacanthus
ENSSBOG00000023632	UPF1	98	97.872	ENSAMEG00000011474	UPF1	96	97.872	Ailuropoda_melanoleuca
ENSSBOG00000023632	UPF1	95	94.015	ENSACIG00000010985	-	100	94.112	Amphilophus_citrinellus
ENSSBOG00000023632	UPF1	96	92.045	ENSACIG00000019949	upf1	95	92.512	Amphilophus_citrinellus
ENSSBOG00000023632	UPF1	96	94.084	ENSAOCG00000006352	-	100	91.426	Amphiprion_ocellaris
ENSSBOG00000023632	UPF1	96	91.572	ENSAOCG00000018519	upf1	95	92.257	Amphiprion_ocellaris
ENSSBOG00000023632	UPF1	96	91.572	ENSAPEG00000016344	upf1	95	92.257	Amphiprion_percula
ENSSBOG00000023632	UPF1	96	94.084	ENSAPEG00000006292	-	100	91.426	Amphiprion_percula
ENSSBOG00000023632	UPF1	96	94.084	ENSATEG00000016606	-	94	94.179	Anabas_testudineus
ENSSBOG00000023632	UPF1	96	90.689	ENSATEG00000017867	upf1	95	91.620	Anabas_testudineus
ENSSBOG00000023632	UPF1	96	98.190	ENSAPLG00000009175	UPF1	99	98.190	Anas_platyrhynchos
ENSSBOG00000023632	UPF1	99	97.802	ENSANAG00000024107	UPF1	99	97.802	Aotus_nancymaae
ENSSBOG00000023632	UPF1	96	91.856	ENSACLG00000007181	upf1	95	92.322	Astatotilapia_calliptera
ENSSBOG00000023632	UPF1	96	93.983	ENSACLG00000022630	-	94	93.983	Astatotilapia_calliptera
ENSSBOG00000023632	UPF1	96	94.202	ENSAMXG00000042187	upf1	95	94.772	Astyanax_mexicanus
ENSSBOG00000023632	UPF1	99	96.986	ENSBTAG00000020922	UPF1	97	96.986	Bos_taurus
ENSSBOG00000023632	UPF1	84	53.055	WBGene00004880	smg-2	94	50.145	Caenorhabditis_elegans
ENSSBOG00000023632	UPF1	98	98.419	ENSCJAG00000019627	UPF1	95	98.419	Callithrix_jacchus
ENSSBOG00000023632	UPF1	98	97.514	ENSCAFG00000014578	UPF1	96	97.514	Canis_familiaris
ENSSBOG00000023632	UPF1	98	96.501	ENSCAFG00020012347	UPF1	96	96.501	Canis_lupus_dingo
ENSSBOG00000023632	UPF1	99	97.250	ENSCHIG00000011018	UPF1	97	97.250	Capra_hircus
ENSSBOG00000023632	UPF1	98	97.774	ENSTSYG00000008877	UPF1	99	97.774	Carlito_syrichta
ENSSBOG00000023632	UPF1	96	98.667	ENSCAPG00000005758	UPF1	95	98.667	Cavia_aperea
ENSSBOG00000023632	UPF1	96	98.760	ENSCPOG00000025463	UPF1	94	98.760	Cavia_porcellus
ENSSBOG00000023632	UPF1	98	98.329	ENSCCAG00000032175	UPF1	96	98.329	Cebus_capucinus
ENSSBOG00000023632	UPF1	99	97.796	ENSCATG00000040306	UPF1	100	97.796	Cercocebus_atys
ENSSBOG00000023632	UPF1	99	97.679	ENSCLAG00000004037	UPF1	99	99.524	Chinchilla_lanigera
ENSSBOG00000023632	UPF1	98	96.858	ENSCSAG00000005276	UPF1	96	96.858	Chlorocebus_sabaeus
ENSSBOG00000023632	UPF1	98	95.911	ENSCPBG00000012513	UPF1	95	95.911	Chrysemys_picta_bellii
ENSSBOG00000023632	UPF1	71	82.497	ENSCING00000021399	-	91	82.497	Ciona_intestinalis
ENSSBOG00000023632	UPF1	96	73.415	ENSCSAVG00000006533	-	94	73.415	Ciona_savignyi
ENSSBOG00000023632	UPF1	99	98.329	ENSCANG00000029819	UPF1	99	98.329	Colobus_angolensis_palliatus
ENSSBOG00000023632	UPF1	99	96.293	ENSCGRG00001021067	Upf1	96	96.293	Cricetulus_griseus_chok1gshd
ENSSBOG00000023632	UPF1	96	98.952	ENSCGRG00000013480	Upf1	98	98.952	Cricetulus_griseus_crigri
ENSSBOG00000023632	UPF1	96	87.027	ENSCSEG00000017239	upf1	95	87.216	Cynoglossus_semilaevis
ENSSBOG00000023632	UPF1	96	94.078	ENSCSEG00000016159	-	94	94.078	Cynoglossus_semilaevis
ENSSBOG00000023632	UPF1	96	93.893	ENSCVAG00000010561	upf1	94	93.893	Cyprinodon_variegatus
ENSSBOG00000023632	UPF1	96	94.011	ENSDARG00000016302	upf1	95	94.582	Danio_rerio
ENSSBOG00000023632	UPF1	98	95.163	ENSDORG00000009984	Upf1	95	96.670	Dipodomys_ordii
ENSSBOG00000023632	UPF1	81	73.579	FBgn0030354	Upf1	80	69.610	Drosophila_melanogaster
ENSSBOG00000023632	UPF1	50	89.031	ENSEBUG00000010069	upf1	88	89.031	Eptatretus_burgeri
ENSSBOG00000023632	UPF1	99	95.890	ENSEASG00005006549	UPF1	97	95.890	Equus_asinus_asinus
ENSSBOG00000023632	UPF1	99	95.890	ENSECAG00000010639	UPF1	97	95.890	Equus_caballus
ENSSBOG00000023632	UPF1	96	91.485	ENSELUG00000020917	upf1	95	91.769	Esox_lucius
ENSSBOG00000023632	UPF1	96	93.264	ENSELUG00000012916	-	94	93.270	Esox_lucius
ENSSBOG00000023632	UPF1	98	97.422	ENSFCAG00000009757	UPF1	96	97.422	Felis_catus
ENSSBOG00000023632	UPF1	98	95.560	ENSFALG00000009312	UPF1	98	95.560	Ficedula_albicollis
ENSSBOG00000023632	UPF1	99	97.232	ENSFDAG00000014816	UPF1	99	99.429	Fukomys_damarensis
ENSSBOG00000023632	UPF1	96	89.444	ENSFHEG00000006428	upf1	94	89.444	Fundulus_heteroclitus
ENSSBOG00000023632	UPF1	87	93.648	ENSFHEG00000016276	-	95	93.829	Fundulus_heteroclitus
ENSSBOG00000023632	UPF1	96	93.702	ENSGMOG00000007541	upf1	94	94.275	Gadus_morhua
ENSSBOG00000023632	UPF1	99	96.007	ENSGALG00000003220	UPF1	95	96.007	Gallus_gallus
ENSSBOG00000023632	UPF1	96	93.792	ENSGAFG00000004831	upf1	94	93.792	Gambusia_affinis
ENSSBOG00000023632	UPF1	64	93.901	ENSGAFG00000015443	-	88	91.621	Gambusia_affinis
ENSSBOG00000023632	UPF1	98	96.272	ENSGAGG00000022217	UPF1	95	96.272	Gopherus_agassizii
ENSSBOG00000023632	UPF1	96	98.857	ENSGGOG00000002608	UPF1	99	98.857	Gorilla_gorilla
ENSSBOG00000023632	UPF1	83	100.000	ENSHBUG00000008939	upf1	89	100.000	Haplochromis_burtoni
ENSSBOG00000023632	UPF1	83	86.207	ENSHBUG00000014694	upf1	90	86.207	Haplochromis_burtoni
ENSSBOG00000023632	UPF1	98	97.412	ENSHGLG00000010900	UPF1	96	97.412	Heterocephalus_glaber_female
ENSSBOG00000023632	UPF1	96	97.524	ENSHGLG00100005904	UPF1	96	97.524	Heterocephalus_glaber_male
ENSSBOG00000023632	UPF1	96	92.932	ENSHCOG00000008918	upf1	100	92.823	Hippocampus_comes
ENSSBOG00000023632	UPF1	96	94.582	ENSIPUG00000005108	UPF1	95	95.057	Ictalurus_punctatus
ENSSBOG00000023632	UPF1	99	97.868	ENSSTOG00000009196	UPF1	96	97.868	Ictidomys_tridecemlineatus
ENSSBOG00000023632	UPF1	98	97.302	ENSJJAG00000023151	Upf1	96	97.302	Jaculus_jaculus
ENSSBOG00000023632	UPF1	96	94.179	ENSKMAG00000004962	upf1	94	94.179	Kryptolebias_marmoratus
ENSSBOG00000023632	UPF1	96	93.893	ENSLBEG00000027848	-	94	93.989	Labrus_bergylta
ENSSBOG00000023632	UPF1	96	90.525	ENSLBEG00000014862	upf1	95	91.839	Labrus_bergylta
ENSSBOG00000023632	UPF1	64	97.274	ENSLACG00000008482	UPF1	100	97.274	Latimeria_chalumnae
ENSSBOG00000023632	UPF1	96	96.289	ENSLOCG00000002072	upf1	95	96.289	Lepisosteus_oculatus
ENSSBOG00000023632	UPF1	98	97.761	ENSLAFG00000014963	UPF1	95	97.761	Loxodonta_africana
ENSSBOG00000023632	UPF1	98	98.419	ENSMFAG00000037748	UPF1	96	98.329	Macaca_fascicularis
ENSSBOG00000023632	UPF1	99	98.239	ENSMMUG00000023286	UPF1	96	98.239	Macaca_mulatta
ENSSBOG00000023632	UPF1	98	98.419	ENSMNEG00000000046	UPF1	96	98.329	Macaca_nemestrina
ENSSBOG00000023632	UPF1	96	99.905	ENSMLEG00000028404	UPF1	99	99.905	Mandrillus_leucophaeus
ENSSBOG00000023632	UPF1	96	93.321	ENSMAMG00000006231	-	94	93.893	Mastacembelus_armatus
ENSSBOG00000023632	UPF1	96	90.503	ENSMAMG00000006229	upf1	95	91.620	Mastacembelus_armatus
ENSSBOG00000023632	UPF1	96	90.739	ENSMZEG00005003489	upf1	95	92.098	Maylandia_zebra
ENSSBOG00000023632	UPF1	96	93.983	ENSMZEG00005016386	-	94	93.983	Maylandia_zebra
ENSSBOG00000023632	UPF1	96	97.716	ENSMGAG00000004745	UPF1	99	97.716	Meleagris_gallopavo
ENSSBOG00000023632	UPF1	99	95.640	ENSMAUG00000011398	Upf1	99	95.640	Mesocricetus_auratus
ENSSBOG00000023632	UPF1	99	96.584	ENSMICG00000001659	UPF1	96	96.584	Microcebus_murinus
ENSSBOG00000023632	UPF1	99	97.220	ENSMOCG00000005699	Upf1	96	97.220	Microtus_ochrogaster
ENSSBOG00000023632	UPF1	96	91.985	ENSMMOG00000007881	upf1	94	92.564	Mola_mola
ENSSBOG00000023632	UPF1	96	91.794	ENSMMOG00000007537	-	99	91.889	Mola_mola
ENSSBOG00000023632	UPF1	98	97.484	ENSMODG00000003689	UPF1	95	97.723	Monodelphis_domestica
ENSSBOG00000023632	UPF1	96	91.810	ENSMALG00000000144	upf1	94	92.190	Monopterus_albus
ENSSBOG00000023632	UPF1	96	92.600	ENSMALG00000018100	-	94	92.694	Monopterus_albus
ENSSBOG00000023632	UPF1	99	97.220	MGP_CAROLIEiJ_G0031142	Upf1	96	97.220	Mus_caroli
ENSSBOG00000023632	UPF1	99	97.220	ENSMUSG00000058301	Upf1	96	97.220	Mus_musculus
ENSSBOG00000023632	UPF1	99	97.220	MGP_PahariEiJ_G0021607	Upf1	96	97.220	Mus_pahari
ENSSBOG00000023632	UPF1	99	97.220	MGP_SPRETEiJ_G0032260	Upf1	96	97.220	Mus_spretus
ENSSBOG00000023632	UPF1	98	96.501	ENSMPUG00000015516	UPF1	96	96.501	Mustela_putorius_furo
ENSSBOG00000023632	UPF1	98	96.221	ENSMLUG00000012122	UPF1	96	96.221	Myotis_lucifugus
ENSSBOG00000023632	UPF1	99	97.220	ENSNGAG00000024107	Upf1	95	97.220	Nannospalax_galili
ENSSBOG00000023632	UPF1	96	90.057	ENSNBRG00000000670	upf1	94	90.521	Neolamprologus_brichardi
ENSSBOG00000023632	UPF1	95	92.885	ENSNBRG00000022069	-	100	92.885	Neolamprologus_brichardi
ENSSBOG00000023632	UPF1	96	94.095	ENSNLEG00000006062	UPF1	99	94.095	Nomascus_leucogenys
ENSSBOG00000023632	UPF1	79	94.314	ENSMEUG00000014146	-	76	94.314	Notamacropus_eugenii
ENSSBOG00000023632	UPF1	96	90.476	ENSOPRG00000014018	UPF1	99	90.476	Ochotona_princeps
ENSSBOG00000023632	UPF1	98	97.953	ENSODEG00000012426	UPF1	96	97.953	Octodon_degus
ENSSBOG00000023632	UPF1	96	94.078	ENSONIG00000012729	-	94	94.078	Oreochromis_niloticus
ENSSBOG00000023632	UPF1	96	91.020	ENSONIG00000010452	upf1	95	92.380	Oreochromis_niloticus
ENSSBOG00000023632	UPF1	98	97.111	ENSOANG00000004568	UPF1	95	97.111	Ornithorhynchus_anatinus
ENSSBOG00000023632	UPF1	96	93.798	ENSORLG00000008453	upf1	94	93.798	Oryzias_latipes
ENSSBOG00000023632	UPF1	96	93.798	ENSORLG00020014758	upf1	94	93.798	Oryzias_latipes_hni
ENSSBOG00000023632	UPF1	96	93.798	ENSORLG00015010165	upf1	100	89.692	Oryzias_latipes_hsok
ENSSBOG00000023632	UPF1	96	93.893	ENSOMEG00000003665	upf1	94	93.893	Oryzias_melastigma
ENSSBOG00000023632	UPF1	98	97.302	ENSOGAG00000012866	UPF1	95	97.302	Otolemur_garnettii
ENSSBOG00000023632	UPF1	93	99.309	ENSOARG00000010739	UPF1	93	99.309	Ovis_aries
ENSSBOG00000023632	UPF1	99	98.146	ENSPPAG00000043884	UPF1	98	98.146	Pan_paniscus
ENSSBOG00000023632	UPF1	98	97.422	ENSPPRG00000023470	UPF1	96	97.422	Panthera_pardus
ENSSBOG00000023632	UPF1	96	96.476	ENSPTIG00000010159	UPF1	99	96.476	Panthera_tigris_altaica
ENSSBOG00000023632	UPF1	98	98.419	ENSPTRG00000010721	UPF1	96	98.329	Pan_troglodytes
ENSSBOG00000023632	UPF1	98	98.419	ENSPANG00000008847	UPF1	96	98.329	Papio_anubis
ENSSBOG00000023632	UPF1	90	93.522	ENSPKIG00000006069	upf1	94	93.522	Paramormyrops_kingsleyae
ENSSBOG00000023632	UPF1	70	97.908	ENSPSIG00000009491	UPF1	100	97.908	Pelodiscus_sinensis
ENSSBOG00000023632	UPF1	96	90.427	ENSPMGG00000017327	upf1	95	90.634	Periophthalmus_magnuspinnatus
ENSSBOG00000023632	UPF1	99	97.312	ENSPEMG00000001085	Upf1	96	97.312	Peromyscus_maniculatus_bairdii
ENSSBOG00000023632	UPF1	96	89.058	ENSPMAG00000001206	upf1	94	89.058	Petromyzon_marinus
ENSSBOG00000023632	UPF1	96	98.000	ENSPCIG00000006156	UPF1	93	98.000	Phascolarctos_cinereus
ENSSBOG00000023632	UPF1	96	90.832	ENSPLAG00000018155	-	94	90.832	Poecilia_latipinna
ENSSBOG00000023632	UPF1	96	93.887	ENSPLAG00000016232	-	94	93.887	Poecilia_latipinna
ENSSBOG00000023632	UPF1	96	93.983	ENSPMEG00000016319	-	94	93.983	Poecilia_mexicana
ENSSBOG00000023632	UPF1	96	91.429	ENSPMEG00000011443	-	94	91.429	Poecilia_mexicana
ENSSBOG00000023632	UPF1	96	91.399	ENSPREG00000009940	upf1	94	91.399	Poecilia_reticulata
ENSSBOG00000023632	UPF1	96	93.696	ENSPREG00000011247	-	94	93.696	Poecilia_reticulata
ENSSBOG00000023632	UPF1	98	93.209	ENSPPYG00000009752	UPF1	95	93.209	Pongo_abelii
ENSSBOG00000023632	UPF1	67	100.000	ENSPCAG00000012962	UPF1	65	100.000	Procavia_capensis
ENSSBOG00000023632	UPF1	98	98.047	ENSPCOG00000023813	UPF1	97	96.978	Propithecus_coquereli
ENSSBOG00000023632	UPF1	64	100.000	ENSPVAG00000003183	UPF1	61	100.000	Pteropus_vampyrus
ENSSBOG00000023632	UPF1	96	93.983	ENSPNYG00000016731	-	94	93.983	Pundamilia_nyererei
ENSSBOG00000023632	UPF1	96	90.739	ENSPNYG00000003694	upf1	95	92.098	Pundamilia_nyererei
ENSSBOG00000023632	UPF1	96	94.202	ENSPNAG00000025614	upf1	95	94.772	Pygocentrus_nattereri
ENSSBOG00000023632	UPF1	99	97.220	ENSRNOG00000020134	Upf1	96	97.220	Rattus_norvegicus
ENSSBOG00000023632	UPF1	99	96.100	ENSRBIG00000013894	UPF1	98	98.593	Rhinopithecus_bieti
ENSSBOG00000023632	UPF1	99	98.422	ENSRROG00000040935	UPF1	99	98.422	Rhinopithecus_roxellana
ENSSBOG00000023632	UPF1	75	56.348	YMR080C	NAM7	84	56.348	Saccharomyces_cerevisiae
ENSSBOG00000023632	UPF1	96	98.859	ENSSHAG00000010499	UPF1	99	98.859	Sarcophilus_harrisii
ENSSBOG00000023632	UPF1	96	96.289	ENSSFOG00015021095	upf1	99	96.194	Scleropages_formosus
ENSSBOG00000023632	UPF1	96	90.320	ENSSMAG00000005055	upf1	94	91.268	Scophthalmus_maximus
ENSSBOG00000023632	UPF1	96	94.084	ENSSMAG00000021018	-	94	94.179	Scophthalmus_maximus
ENSSBOG00000023632	UPF1	96	90.689	ENSSDUG00000013320	upf1	95	91.806	Seriola_dumerili
ENSSBOG00000023632	UPF1	96	94.275	ENSSDUG00000009629	-	94	94.370	Seriola_dumerili
ENSSBOG00000023632	UPF1	96	91.541	ENSSLDG00000020868	upf1	95	92.120	Seriola_lalandi_dorsalis
ENSSBOG00000023632	UPF1	96	94.275	ENSSLDG00000006878	-	94	94.370	Seriola_lalandi_dorsalis
ENSSBOG00000023632	UPF1	96	97.714	ENSSPUG00000010538	UPF1	94	97.714	Sphenodon_punctatus
ENSSBOG00000023632	UPF1	96	94.269	ENSSPAG00000011521	-	94	94.269	Stegastes_partitus
ENSSBOG00000023632	UPF1	96	90.105	ENSSPAG00000000003	upf1	94	90.133	Stegastes_partitus
ENSSBOG00000023632	UPF1	99	96.895	ENSSSCG00000039301	UPF1	99	98.571	Sus_scrofa
ENSSBOG00000023632	UPF1	78	91.415	ENSTGUG00000001057	UPF1	88	97.324	Taeniopygia_guttata
ENSSBOG00000023632	UPF1	96	93.028	ENSTRUG00000005131	-	94	93.123	Takifugu_rubripes
ENSSBOG00000023632	UPF1	96	92.073	ENSTRUG00000000150	upf1	95	91.447	Takifugu_rubripes
ENSSBOG00000023632	UPF1	96	94.762	ENSTTRG00000011544	UPF1	93	94.762	Tursiops_truncatus
ENSSBOG00000023632	UPF1	98	96.409	ENSUAMG00000007093	UPF1	96	96.409	Ursus_americanus
ENSSBOG00000023632	UPF1	98	98.224	ENSUMAG00000006652	UPF1	99	98.769	Ursus_maritimus
ENSSBOG00000023632	UPF1	98	96.501	ENSVVUG00000007797	UPF1	96	96.501	Vulpes_vulpes
ENSSBOG00000023632	UPF1	98	82.070	ENSXETG00000013602	upf1	92	83.586	Xenopus_tropicalis
ENSSBOG00000023632	UPF1	95	93.858	ENSXCOG00000005764	-	100	93.858	Xiphophorus_couchianus
ENSSBOG00000023632	UPF1	92	91.098	ENSXCOG00000015275	-	91	91.098	Xiphophorus_couchianus
ENSSBOG00000023632	UPF1	96	93.792	ENSXMAG00000002540	-	94	93.792	Xiphophorus_maculatus
ENSSBOG00000023632	UPF1	96	91.317	ENSXMAG00000001703	-	94	91.317	Xiphophorus_maculatus