EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSBOG00000024237 (Gene tree)
Gene ID: 101050158
Gene Symbol: TRUB1
Alias: PUS4
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Saimiri_boliviensis_boliviensis
Status: putative
Strand: Minus strand
Length: 41789 bases
Position: chrJH378110.1:17778083-17819871
Accession: 16060
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSBOP00000014991	TruB_N	PF01509.18	3.3e-50	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSBOT00000031789	TRUB1-201	3803	XM_003922178	ENSSBOP00000014991	351 (aa)	XP_003922227	A0A2K6T5S2

Gene Model

Click here to download ENSSBOG00000024237's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSBOG00000024237's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSBOG00000024237	TRUB1	71	30.208	ENSSBOG00000022439	TRUB2	86	30.208

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSBOG00000024237	TRUB1	100	95.726	ENSG00000165832	TRUB1	100	95.726	Homo_sapiens
ENSSBOG00000024237	TRUB1	70	68.571	ENSAPOG00000020565	trub1	89	68.293	Acanthochromis_polyacanthus
ENSSBOG00000024237	TRUB1	96	93.491	ENSAMEG00000014931	TRUB1	96	93.491	Ailuropoda_melanoleuca
ENSSBOG00000024237	TRUB1	81	57.746	ENSACIG00000003060	trub1	94	57.746	Amphilophus_citrinellus
ENSSBOG00000024237	TRUB1	70	68.571	ENSAOCG00000017188	trub1	89	68.293	Amphiprion_ocellaris
ENSSBOG00000024237	TRUB1	70	67.886	ENSAPEG00000015209	trub1	89	67.886	Amphiprion_percula
ENSSBOG00000024237	TRUB1	69	68.880	ENSATEG00000023291	trub1	86	68.880	Anabas_testudineus
ENSSBOG00000024237	TRUB1	78	75.636	ENSAPLG00000006808	TRUB1	99	75.636	Anas_platyrhynchos
ENSSBOG00000024237	TRUB1	77	71.004	ENSACAG00000009282	TRUB1	97	71.004	Anolis_carolinensis
ENSSBOG00000024237	TRUB1	100	98.291	ENSANAG00000022870	TRUB1	100	98.291	Aotus_nancymaae
ENSSBOG00000024237	TRUB1	72	67.063	ENSACLG00000000823	trub1	91	67.063	Astatotilapia_calliptera
ENSSBOG00000024237	TRUB1	77	65.314	ENSAMXG00000015845	trub1	90	65.314	Astyanax_mexicanus
ENSSBOG00000024237	TRUB1	97	92.690	ENSBTAG00000012955	TRUB1	95	93.155	Bos_taurus
ENSSBOG00000024237	TRUB1	100	98.860	ENSCJAG00000047815	TRUB1	100	98.860	Callithrix_jacchus
ENSSBOG00000024237	TRUB1	99	93.143	ENSCAFG00000011688	TRUB1	96	94.345	Canis_familiaris
ENSSBOG00000024237	TRUB1	99	93.429	ENSCAFG00020013237	TRUB1	96	94.643	Canis_lupus_dingo
ENSSBOG00000024237	TRUB1	99	92.000	ENSCHIG00000020884	TRUB1	99	92.000	Capra_hircus
ENSSBOG00000024237	TRUB1	100	89.773	ENSTSYG00000000446	TRUB1	96	92.308	Carlito_syrichta
ENSSBOG00000024237	TRUB1	72	84.646	ENSCAPG00000017088	TRUB1	100	84.646	Cavia_aperea
ENSSBOG00000024237	TRUB1	70	85.366	ENSCPOG00000040236	-	95	87.500	Cavia_porcellus
ENSSBOG00000024237	TRUB1	71	80.321	ENSCPOG00000030129	-	82	80.851	Cavia_porcellus
ENSSBOG00000024237	TRUB1	100	98.860	ENSCCAG00000028842	TRUB1	100	98.860	Cebus_capucinus
ENSSBOG00000024237	TRUB1	100	96.581	ENSCATG00000033431	TRUB1	100	96.581	Cercocebus_atys
ENSSBOG00000024237	TRUB1	70	88.618	ENSCLAG00000008664	TRUB1	95	91.379	Chinchilla_lanigera
ENSSBOG00000024237	TRUB1	100	96.866	ENSCSAG00000004891	TRUB1	100	96.866	Chlorocebus_sabaeus
ENSSBOG00000024237	TRUB1	96	80.415	ENSCHOG00000011931	TRUB1	95	80.180	Choloepus_hoffmanni
ENSSBOG00000024237	TRUB1	77	79.412	ENSCPBG00000003051	TRUB1	94	79.412	Chrysemys_picta_bellii
ENSSBOG00000024237	TRUB1	100	96.866	ENSCANG00000029445	TRUB1	100	96.866	Colobus_angolensis_palliatus
ENSSBOG00000024237	TRUB1	72	87.795	ENSCGRG00001016772	-	90	79.461	Cricetulus_griseus_chok1gshd
ENSSBOG00000024237	TRUB1	80	79.643	ENSCGRG00001010322	-	79	79.592	Cricetulus_griseus_chok1gshd
ENSSBOG00000024237	TRUB1	80	88.929	ENSCGRG00000010806	Trub1	91	88.215	Cricetulus_griseus_crigri
ENSSBOG00000024237	TRUB1	73	62.500	ENSCSEG00000011261	trub1	97	56.811	Cynoglossus_semilaevis
ENSSBOG00000024237	TRUB1	74	65.891	ENSCVAG00000008791	trub1	79	65.891	Cyprinodon_variegatus
ENSSBOG00000024237	TRUB1	80	63.929	ENSDARG00000053805	trub1	93	63.929	Danio_rerio
ENSSBOG00000024237	TRUB1	97	87.353	ENSDNOG00000001069	TRUB1	99	86.000	Dasypus_novemcinctus
ENSSBOG00000024237	TRUB1	99	89.429	ENSDORG00000010431	Trub1	96	89.881	Dipodomys_ordii
ENSSBOG00000024237	TRUB1	81	76.471	ENSETEG00000009183	TRUB1	81	77.451	Echinops_telfairi
ENSSBOG00000024237	TRUB1	96	94.048	ENSEASG00005014739	TRUB1	96	94.048	Equus_asinus_asinus
ENSSBOG00000024237	TRUB1	96	94.048	ENSECAG00000007177	TRUB1	96	94.048	Equus_caballus
ENSSBOG00000024237	TRUB1	99	75.698	ENSEEUG00000013993	TRUB1	96	77.907	Erinaceus_europaeus
ENSSBOG00000024237	TRUB1	70	69.796	ENSELUG00000000502	trub1	86	69.796	Esox_lucius
ENSSBOG00000024237	TRUB1	85	96.000	ENSFCAG00000031927	TRUB1	96	93.433	Felis_catus
ENSSBOG00000024237	TRUB1	68	76.250	ENSFALG00000002232	TRUB1	92	76.250	Ficedula_albicollis
ENSSBOG00000024237	TRUB1	68	89.958	ENSFDAG00000008140	TRUB1	95	91.810	Fukomys_damarensis
ENSSBOG00000024237	TRUB1	70	66.531	ENSFHEG00000004016	trub1	84	66.531	Fundulus_heteroclitus
ENSSBOG00000024237	TRUB1	77	75.000	ENSGALG00000009091	TRUB1	97	74.057	Gallus_gallus
ENSSBOG00000024237	TRUB1	69	64.344	ENSGAFG00000009193	trub1	86	64.344	Gambusia_affinis
ENSSBOG00000024237	TRUB1	56	68.205	ENSGACG00000015387	trub1	96	68.205	Gasterosteus_aculeatus
ENSSBOG00000024237	TRUB1	83	77.320	ENSGAGG00000009758	TRUB1	81	78.169	Gopherus_agassizii
ENSSBOG00000024237	TRUB1	100	96.011	ENSGGOG00000004583	TRUB1	96	97.329	Gorilla_gorilla
ENSSBOG00000024237	TRUB1	72	67.063	ENSHBUG00000016787	trub1	91	67.063	Haplochromis_burtoni
ENSSBOG00000024237	TRUB1	99	86.857	ENSHGLG00000015314	TRUB1	96	88.690	Heterocephalus_glaber_female
ENSSBOG00000024237	TRUB1	70	85.772	ENSHGLG00100009183	TRUB1	95	88.793	Heterocephalus_glaber_male
ENSSBOG00000024237	TRUB1	70	68.163	ENSHCOG00000017877	trub1	89	68.163	Hippocampus_comes
ENSSBOG00000024237	TRUB1	79	65.580	ENSIPUG00000017559	trub1	97	65.580	Ictalurus_punctatus
ENSSBOG00000024237	TRUB1	89	93.631	ENSSTOG00000003641	TRUB1	95	89.189	Ictidomys_tridecemlineatus
ENSSBOG00000024237	TRUB1	85	92.308	ENSJJAG00000011800	Trub1	88	92.308	Jaculus_jaculus
ENSSBOG00000024237	TRUB1	72	65.759	ENSKMAG00000006232	trub1	92	65.759	Kryptolebias_marmoratus
ENSSBOG00000024237	TRUB1	70	67.886	ENSLBEG00000026722	trub1	92	63.910	Labrus_bergylta
ENSSBOG00000024237	TRUB1	79	73.188	ENSLACG00000014885	TRUB1	92	73.188	Latimeria_chalumnae
ENSSBOG00000024237	TRUB1	78	70.330	ENSLOCG00000012979	trub1	93	70.330	Lepisosteus_oculatus
ENSSBOG00000024237	TRUB1	100	79.330	ENSLAFG00000015452	TRUB1	100	80.168	Loxodonta_africana
ENSSBOG00000024237	TRUB1	100	96.581	ENSMFAG00000031767	TRUB1	100	96.581	Macaca_fascicularis
ENSSBOG00000024237	TRUB1	100	96.866	ENSMMUG00000001902	TRUB1	100	96.866	Macaca_mulatta
ENSSBOG00000024237	TRUB1	100	92.593	ENSMNEG00000044646	TRUB1	96	93.472	Macaca_nemestrina
ENSSBOG00000024237	TRUB1	100	96.581	ENSMLEG00000042655	TRUB1	100	96.581	Mandrillus_leucophaeus
ENSSBOG00000024237	TRUB1	72	67.063	ENSMZEG00005024095	trub1	91	67.063	Maylandia_zebra
ENSSBOG00000024237	TRUB1	78	73.723	ENSMGAG00000011135	TRUB1	94	73.723	Meleagris_gallopavo
ENSSBOG00000024237	TRUB1	85	85.906	ENSMAUG00000011101	Trub1	89	86.000	Mesocricetus_auratus
ENSSBOG00000024237	TRUB1	99	93.429	ENSMICG00000016324	TRUB1	96	94.940	Microcebus_murinus
ENSSBOG00000024237	TRUB1	91	83.385	ENSMOCG00000017759	Trub1	91	87.375	Microtus_ochrogaster
ENSSBOG00000024237	TRUB1	81	83.217	ENSMODG00000009676	TRUB1	81	81.419	Monodelphis_domestica
ENSSBOG00000024237	TRUB1	99	80.571	MGP_CAROLIEiJ_G0023100	Trub1	96	82.143	Mus_caroli
ENSSBOG00000024237	TRUB1	99	79.429	ENSMUSG00000025086	Trub1	96	80.952	Mus_musculus
ENSSBOG00000024237	TRUB1	99	81.143	MGP_PahariEiJ_G0014588	Trub1	96	82.738	Mus_pahari
ENSSBOG00000024237	TRUB1	99	79.714	MGP_SPRETEiJ_G0024021	Trub1	96	81.250	Mus_spretus
ENSSBOG00000024237	TRUB1	86	97.674	ENSMPUG00000003556	TRUB1	96	95.536	Mustela_putorius_furo
ENSSBOG00000024237	TRUB1	95	89.254	ENSMLUG00000017686	TRUB1	100	87.179	Myotis_lucifugus
ENSSBOG00000024237	TRUB1	99	85.269	ENSNGAG00000018682	Trub1	97	87.798	Nannospalax_galili
ENSSBOG00000024237	TRUB1	70	68.293	ENSNBRG00000023393	trub1	88	68.293	Neolamprologus_brichardi
ENSSBOG00000024237	TRUB1	96	97.033	ENSNLEG00000016345	TRUB1	96	97.033	Nomascus_leucogenys
ENSSBOG00000024237	TRUB1	57	91.045	ENSMEUG00000006603	TRUB1	78	88.152	Notamacropus_eugenii
ENSSBOG00000024237	TRUB1	86	86.047	ENSOPRG00000009371	TRUB1	94	83.436	Ochotona_princeps
ENSSBOG00000024237	TRUB1	99	84.857	ENSODEG00000010854	TRUB1	96	86.310	Octodon_degus
ENSSBOG00000024237	TRUB1	70	67.886	ENSONIG00000007249	trub1	89	67.886	Oreochromis_niloticus
ENSSBOG00000024237	TRUB1	78	80.292	ENSOANG00000001556	TRUB1	96	76.289	Ornithorhynchus_anatinus
ENSSBOG00000024237	TRUB1	86	89.037	ENSOCUG00000009456	TRUB1	96	87.009	Oryctolagus_cuniculus
ENSSBOG00000024237	TRUB1	69	69.295	ENSORLG00000029719	trub1	86	69.295	Oryzias_latipes
ENSSBOG00000024237	TRUB1	69	68.880	ENSORLG00020016767	trub1	85	68.880	Oryzias_latipes_hni
ENSSBOG00000024237	TRUB1	69	68.880	ENSORLG00015014728	trub1	86	68.880	Oryzias_latipes_hsok
ENSSBOG00000024237	TRUB1	74	66.409	ENSOMEG00000014556	trub1	90	66.537	Oryzias_melastigma
ENSSBOG00000024237	TRUB1	99	93.714	ENSOGAG00000015895	TRUB1	96	95.833	Otolemur_garnettii
ENSSBOG00000024237	TRUB1	84	94.040	ENSOARG00000015591	TRUB1	96	89.213	Ovis_aries
ENSSBOG00000024237	TRUB1	100	96.296	ENSPPAG00000043645	TRUB1	100	96.296	Pan_paniscus
ENSSBOG00000024237	TRUB1	95	92.836	ENSPPRG00000007096	TRUB1	96	92.836	Panthera_pardus
ENSSBOG00000024237	TRUB1	95	93.134	ENSPTIG00000006378	TRUB1	96	93.134	Panthera_tigris_altaica
ENSSBOG00000024237	TRUB1	100	96.296	ENSPTRG00000002964	TRUB1	100	96.296	Pan_troglodytes
ENSSBOG00000024237	TRUB1	100	96.581	ENSPANG00000020712	TRUB1	100	96.581	Papio_anubis
ENSSBOG00000024237	TRUB1	77	77.206	ENSPSIG00000012877	TRUB1	93	77.206	Pelodiscus_sinensis
ENSSBOG00000024237	TRUB1	70	66.122	ENSPMGG00000000075	trub1	88	66.122	Periophthalmus_magnuspinnatus
ENSSBOG00000024237	TRUB1	85	85.667	ENSPEMG00000011156	Trub1	88	85.667	Peromyscus_maniculatus_bairdii
ENSSBOG00000024237	TRUB1	81	82.517	ENSPCIG00000009729	TRUB1	79	81.507	Phascolarctos_cinereus
ENSSBOG00000024237	TRUB1	70	66.122	ENSPFOG00000009950	trub1	90	66.122	Poecilia_formosa
ENSSBOG00000024237	TRUB1	70	66.122	ENSPLAG00000013855	trub1	86	66.122	Poecilia_latipinna
ENSSBOG00000024237	TRUB1	70	66.122	ENSPMEG00000009064	trub1	88	66.122	Poecilia_mexicana
ENSSBOG00000024237	TRUB1	70	66.939	ENSPREG00000003343	trub1	88	66.939	Poecilia_reticulata
ENSSBOG00000024237	TRUB1	96	96.736	ENSPPYG00000002676	TRUB1	96	96.736	Pongo_abelii
ENSSBOG00000024237	TRUB1	100	75.637	ENSPCAG00000008427	TRUB1	100	75.354	Procavia_capensis
ENSSBOG00000024237	TRUB1	99	88.571	ENSPCOG00000024360	TRUB1	96	90.149	Propithecus_coquereli
ENSSBOG00000024237	TRUB1	75	92.830	ENSPVAG00000007575	TRUB1	95	94.821	Pteropus_vampyrus
ENSSBOG00000024237	TRUB1	72	67.063	ENSPNYG00000018614	trub1	91	67.063	Pundamilia_nyererei
ENSSBOG00000024237	TRUB1	74	59.231	ENSPNAG00000006881	trub1	88	58.088	Pygocentrus_nattereri
ENSSBOG00000024237	TRUB1	99	81.429	ENSRNOG00000017321	Trub1	96	82.738	Rattus_norvegicus
ENSSBOG00000024237	TRUB1	100	86.610	ENSRBIG00000033423	TRUB1	96	87.537	Rhinopithecus_bieti
ENSSBOG00000024237	TRUB1	100	96.296	ENSRROG00000033902	TRUB1	96	97.626	Rhinopithecus_roxellana
ENSSBOG00000024237	TRUB1	72	81.250	ENSSHAG00000009346	TRUB1	86	81.250	Sarcophilus_harrisii
ENSSBOG00000024237	TRUB1	69	69.959	ENSSFOG00015022124	trub1	83	69.959	Scleropages_formosus
ENSSBOG00000024237	TRUB1	70	68.699	ENSSMAG00000001020	trub1	88	68.699	Scophthalmus_maximus
ENSSBOG00000024237	TRUB1	68	69.167	ENSSDUG00000016414	trub1	88	69.106	Seriola_dumerili
ENSSBOG00000024237	TRUB1	68	69.583	ENSSLDG00000015486	trub1	88	69.512	Seriola_lalandi_dorsalis
ENSSBOG00000024237	TRUB1	80	77.500	ENSSPUG00000001642	TRUB1	96	77.500	Sphenodon_punctatus
ENSSBOG00000024237	TRUB1	74	66.923	ENSSPAG00000001217	trub1	92	66.923	Stegastes_partitus
ENSSBOG00000024237	TRUB1	99	88.000	ENSSSCG00000010653	TRUB1	96	88.988	Sus_scrofa
ENSSBOG00000024237	TRUB1	77	75.926	ENSTGUG00000010971	TRUB1	97	75.735	Taeniopygia_guttata
ENSSBOG00000024237	TRUB1	72	77.075	ENSTBEG00000002880	TRUB1	99	77.075	Tupaia_belangeri
ENSSBOG00000024237	TRUB1	72	92.032	ENSTTRG00000005767	TRUB1	95	90.837	Tursiops_truncatus
ENSSBOG00000024237	TRUB1	96	94.940	ENSUAMG00000024876	TRUB1	96	94.940	Ursus_americanus
ENSSBOG00000024237	TRUB1	84	97.288	ENSUMAG00000002411	TRUB1	96	90.476	Ursus_maritimus
ENSSBOG00000024237	TRUB1	99	92.000	ENSVPAG00000005507	TRUB1	96	93.155	Vicugna_pacos
ENSSBOG00000024237	TRUB1	99	92.286	ENSVVUG00000010085	TRUB1	80	92.560	Vulpes_vulpes
ENSSBOG00000024237	TRUB1	77	66.176	ENSXETG00000023828	trub1	98	66.176	Xenopus_tropicalis
ENSSBOG00000024237	TRUB1	69	65.021	ENSXCOG00000017847	trub1	86	65.021	Xiphophorus_couchianus
ENSSBOG00000024237	TRUB1	70	65.306	ENSXMAG00000014701	trub1	88	65.306	Xiphophorus_maculatus