EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSBOG00000025579 (Gene tree)
Gene ID: 101039719
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saimiri_boliviensis_boliviensis
Status: putative
Strand: Plus strand
Length: 5978 bases
Position: chrJH378167.1:7793917-7799894
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSBOP00000017887	RNA_pol_L_2	PF13656.6	4.2e-29	1	1
ENSSBOP00000017891	RNA_pol_L_2	PF13656.6	3.2e-18	1	1
ENSSBOP00000017887	RNA_pol_L	PF01193.24	4.6e-10	1	1
ENSSBOP00000017891	RNA_pol_L	PF01193.24	0.00029	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSBOT00000034702	-	539	XM_003934140	ENSSBOP00000017887	117 (aa)	XP_003934189	A0A2K6TE13
ENSSBOT00000034706	-	264	-	ENSSBOP00000017891	87 (aa)	-	A0A2K6TE26

Gene Model

Click here to download ENSSBOG00000025579's gene model file

Pathways

Pathway ID	Pathway Name	Source
sbq03020	RNA polymerase	KEGG
sbq05016	Huntington disease	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSBOG00000025579's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSBOG00000025579	-	85	32.039	ENSSBOG00000028482	-	77	32.039
ENSSBOG00000025579	-	91	31.193	ENSSBOG00000030146	-	79	31.193

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSBOG00000025579	-	91	98.131	ENSG00000228049	POLR2J2	94	95.413	Homo_sapiens
ENSSBOG00000025579	-	100	100.000	ENSG00000005075	POLR2J	100	100.000	Homo_sapiens
ENSSBOG00000025579	-	100	94.872	ENSAPOG00000019538	polr2j	100	94.872	Acanthochromis_polyacanthus
ENSSBOG00000025579	-	100	92.126	ENSAMEG00000015480	-	100	92.126	Ailuropoda_melanoleuca
ENSSBOG00000025579	-	93	71.818	ENSACIG00000014549	POLR2J2	91	71.818	Amphilophus_citrinellus
ENSSBOG00000025579	-	100	94.017	ENSAOCG00000006937	polr2j	100	94.017	Amphiprion_ocellaris
ENSSBOG00000025579	-	100	94.872	ENSAPEG00000021761	polr2j	100	94.872	Amphiprion_percula
ENSSBOG00000025579	-	100	94.872	ENSATEG00000013312	-	100	94.872	Anabas_testudineus
ENSSBOG00000025579	-	100	94.872	ENSATEG00000009731	polr2j	100	94.872	Anabas_testudineus
ENSSBOG00000025579	-	86	98.020	ENSAPLG00000003744	-	100	98.020	Anas_platyrhynchos
ENSSBOG00000025579	-	100	90.598	ENSACAG00000000251	POLR2J	100	90.598	Anolis_carolinensis
ENSSBOG00000025579	-	100	94.872	ENSACLG00000014564	polr2j	100	94.872	Astatotilapia_calliptera
ENSSBOG00000025579	-	100	96.581	ENSAMXG00000007517	polr2j	100	96.581	Astyanax_mexicanus
ENSSBOG00000025579	-	62	68.493	ENSBTAG00000048046	-	61	68.493	Bos_taurus
ENSSBOG00000025579	-	94	70.000	WBGene00012187	rpb-11	89	70.000	Caenorhabditis_elegans
ENSSBOG00000025579	-	100	100.000	ENSCJAG00000016203	-	100	100.000	Callithrix_jacchus
ENSSBOG00000025579	-	100	100.000	ENSCAFG00000013683	-	100	100.000	Canis_familiaris
ENSSBOG00000025579	-	85	100.000	ENSTSYG00000029243	-	85	100.000	Carlito_syrichta
ENSSBOG00000025579	-	100	100.000	ENSCPOG00000001401	-	100	100.000	Cavia_porcellus
ENSSBOG00000025579	-	100	100.000	ENSCATG00000016595	-	100	100.000	Cercocebus_atys
ENSSBOG00000025579	-	100	100.000	ENSCLAG00000005238	-	100	100.000	Chinchilla_lanigera
ENSSBOG00000025579	-	100	100.000	ENSCSAG00000018092	-	100	100.000	Chlorocebus_sabaeus
ENSSBOG00000025579	-	100	81.197	ENSCING00000020531	-	100	81.197	Ciona_intestinalis
ENSSBOG00000025579	-	100	81.197	ENSCSAVG00000006948	-	100	81.197	Ciona_savignyi
ENSSBOG00000025579	-	100	100.000	ENSCGRG00001012814	Polr2j	100	100.000	Cricetulus_griseus_chok1gshd
ENSSBOG00000025579	-	100	84.615	ENSCGRG00000008433	Polr2j	100	84.615	Cricetulus_griseus_crigri
ENSSBOG00000025579	-	100	94.017	ENSCSEG00000020352	polr2j	100	94.017	Cynoglossus_semilaevis
ENSSBOG00000025579	-	100	94.017	ENSCVAG00000014267	polr2j	100	94.017	Cyprinodon_variegatus
ENSSBOG00000025579	-	100	95.726	ENSDARG00000035146	polr2j	100	95.726	Danio_rerio
ENSSBOG00000025579	-	100	100.000	ENSDORG00000005934	Polr2j	100	100.000	Dipodomys_ordii
ENSSBOG00000025579	-	98	78.261	FBgn0032634	Rpb11	98	78.261	Drosophila_melanogaster
ENSSBOG00000025579	-	100	86.207	ENSEBUG00000016100	polr2j	100	86.207	Eptatretus_burgeri
ENSSBOG00000025579	-	100	100.000	ENSEASG00005016864	-	100	100.000	Equus_asinus_asinus
ENSSBOG00000025579	-	100	95.726	ENSELUG00000012822	polr2j	100	95.726	Esox_lucius
ENSSBOG00000025579	-	100	100.000	ENSFCAG00000000377	-	100	100.000	Felis_catus
ENSSBOG00000025579	-	100	100.000	ENSFALG00000009523	POLR2J	100	100.000	Ficedula_albicollis
ENSSBOG00000025579	-	100	100.000	ENSFDAG00000010507	-	100	100.000	Fukomys_damarensis
ENSSBOG00000025579	-	100	94.872	ENSFHEG00000006625	polr2j	100	94.872	Fundulus_heteroclitus
ENSSBOG00000025579	-	100	94.872	ENSGMOG00000018207	polr2j	100	94.872	Gadus_morhua
ENSSBOG00000025579	-	100	100.000	ENSGALG00000030808	-	100	100.000	Gallus_gallus
ENSSBOG00000025579	-	100	94.872	ENSGAFG00000019555	polr2j	100	94.872	Gambusia_affinis
ENSSBOG00000025579	-	100	94.872	ENSGACG00000003310	polr2j	100	94.872	Gasterosteus_aculeatus
ENSSBOG00000025579	-	97	90.265	ENSGAGG00000018304	-	96	90.265	Gopherus_agassizii
ENSSBOG00000025579	-	85	95.000	ENSGGOG00000004519	-	80	95.000	Gorilla_gorilla
ENSSBOG00000025579	-	100	94.872	ENSHBUG00000008467	polr2j	100	94.872	Haplochromis_burtoni
ENSSBOG00000025579	-	100	100.000	ENSHGLG00000013598	POLR2J	100	100.000	Heterocephalus_glaber_female
ENSSBOG00000025579	-	100	100.000	ENSHGLG00100011242	POLR2J	100	100.000	Heterocephalus_glaber_male
ENSSBOG00000025579	-	100	94.872	ENSHCOG00000014827	polr2j	68	94.872	Hippocampus_comes
ENSSBOG00000025579	-	100	96.581	ENSIPUG00000023960	polr2j	100	96.581	Ictalurus_punctatus
ENSSBOG00000025579	-	100	100.000	ENSSTOG00000006377	POLR2J	100	100.000	Ictidomys_tridecemlineatus
ENSSBOG00000025579	-	100	100.000	ENSJJAG00000013854	-	100	100.000	Jaculus_jaculus
ENSSBOG00000025579	-	100	94.872	ENSJJAG00000018834	-	100	94.872	Jaculus_jaculus
ENSSBOG00000025579	-	100	94.872	ENSKMAG00000014581	polr2j	79	94.872	Kryptolebias_marmoratus
ENSSBOG00000025579	-	100	94.872	ENSLBEG00000005885	polr2j	100	94.872	Labrus_bergylta
ENSSBOG00000025579	-	100	96.581	ENSLOCG00000001885	polr2j	89	96.581	Lepisosteus_oculatus
ENSSBOG00000025579	-	100	100.000	ENSLAFG00000021507	-	100	100.000	Loxodonta_africana
ENSSBOG00000025579	-	100	100.000	ENSMMUG00000012019	POLR2J	100	100.000	Macaca_mulatta
ENSSBOG00000025579	-	100	94.872	ENSMAMG00000009374	polr2j	100	94.872	Mastacembelus_armatus
ENSSBOG00000025579	-	100	94.872	ENSMZEG00005011932	polr2j	100	94.872	Maylandia_zebra
ENSSBOG00000025579	-	100	100.000	ENSMGAG00000003534	POLR2J	100	100.000	Meleagris_gallopavo
ENSSBOG00000025579	-	100	100.000	ENSMAUG00000013049	Polr2j	100	100.000	Mesocricetus_auratus
ENSSBOG00000025579	-	80	95.745	ENSMICG00000026811	-	94	95.745	Microcebus_murinus
ENSSBOG00000025579	-	100	100.000	ENSMOCG00000001294	Polr2j	100	100.000	Microtus_ochrogaster
ENSSBOG00000025579	-	100	94.017	ENSMMOG00000013265	polr2j	100	94.017	Mola_mola
ENSSBOG00000025579	-	100	91.406	ENSMODG00000013617	-	100	91.406	Monodelphis_domestica
ENSSBOG00000025579	-	100	94.872	ENSMALG00000020749	polr2j	100	94.872	Monopterus_albus
ENSSBOG00000025579	-	100	100.000	MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	Mus_caroli
ENSSBOG00000025579	-	100	100.000	ENSMUSG00000039771	Polr2j	100	100.000	Mus_musculus
ENSSBOG00000025579	-	100	100.000	MGP_PahariEiJ_G0024434	Polr2j	100	100.000	Mus_pahari
ENSSBOG00000025579	-	100	100.000	MGP_SPRETEiJ_G0028853	Polr2j	100	100.000	Mus_spretus
ENSSBOG00000025579	-	100	100.000	ENSMLUG00000010467	POLR2J	100	100.000	Myotis_lucifugus
ENSSBOG00000025579	-	100	100.000	ENSNGAG00000023412	Polr2j	100	100.000	Nannospalax_galili
ENSSBOG00000025579	-	66	90.909	ENSNBRG00000006580	polr2j	59	90.909	Neolamprologus_brichardi
ENSSBOG00000025579	-	100	100.000	ENSODEG00000015648	-	100	100.000	Octodon_degus
ENSSBOG00000025579	-	100	76.923	ENSODEG00000008559	-	100	76.923	Octodon_degus
ENSSBOG00000025579	-	100	94.872	ENSONIG00000000259	polr2j	100	94.872	Oreochromis_niloticus
ENSSBOG00000025579	-	100	97.436	ENSOANG00000020912	POLR2J	100	97.436	Ornithorhynchus_anatinus
ENSSBOG00000025579	-	100	92.126	ENSOCUG00000023609	POLR2J	100	92.126	Oryctolagus_cuniculus
ENSSBOG00000025579	-	100	94.872	ENSORLG00000029046	polr2j	83	94.872	Oryzias_latipes
ENSSBOG00000025579	-	100	94.872	ENSORLG00020007625	polr2j	83	94.872	Oryzias_latipes_hni
ENSSBOG00000025579	-	100	94.872	ENSORLG00015003457	polr2j	83	94.872	Oryzias_latipes_hsok
ENSSBOG00000025579	-	100	94.017	ENSOMEG00000002097	polr2j	100	94.017	Oryzias_melastigma
ENSSBOG00000025579	-	100	71.875	ENSOGAG00000008250	-	100	71.875	Otolemur_garnettii
ENSSBOG00000025579	-	100	100.000	ENSOARG00000014204	-	98	100.000	Ovis_aries
ENSSBOG00000025579	-	100	100.000	ENSPPRG00000012439	-	100	100.000	Panthera_pardus
ENSSBOG00000025579	-	97	91.228	ENSPTIG00000018714	-	100	97.087	Panthera_tigris_altaica
ENSSBOG00000025579	-	85	99.000	ENSPSIG00000010173	-	100	99.000	Pelodiscus_sinensis
ENSSBOG00000025579	-	100	94.872	ENSPMGG00000021256	polr2j	100	94.872	Periophthalmus_magnuspinnatus
ENSSBOG00000025579	-	100	100.000	ENSPEMG00000015733	Polr2j	100	100.000	Peromyscus_maniculatus_bairdii
ENSSBOG00000025579	-	100	100.000	ENSPCIG00000009026	-	100	100.000	Phascolarctos_cinereus
ENSSBOG00000025579	-	100	94.872	ENSPFOG00000012001	polr2j	99	94.872	Poecilia_formosa
ENSSBOG00000025579	-	100	94.872	ENSPLAG00000014075	polr2j	100	94.872	Poecilia_latipinna
ENSSBOG00000025579	-	100	94.872	ENSPMEG00000020585	polr2j	100	94.872	Poecilia_mexicana
ENSSBOG00000025579	-	100	94.872	ENSPREG00000015255	polr2j	100	94.872	Poecilia_reticulata
ENSSBOG00000025579	-	100	100.000	ENSPCOG00000024573	-	100	100.000	Propithecus_coquereli
ENSSBOG00000025579	-	99	93.966	ENSPVAG00000017770	-	66	93.966	Pteropus_vampyrus
ENSSBOG00000025579	-	100	94.872	ENSPNYG00000014832	polr2j	100	94.872	Pundamilia_nyererei
ENSSBOG00000025579	-	100	94.017	ENSPNAG00000016595	polr2j	100	94.017	Pygocentrus_nattereri
ENSSBOG00000025579	-	100	100.000	ENSRNOG00000001430	Polr2j	100	100.000	Rattus_norvegicus
ENSSBOG00000025579	-	80	98.571	ENSSHAG00000010443	-	81	100.000	Sarcophilus_harrisii
ENSSBOG00000025579	-	93	94.495	ENSSFOG00015003371	polr2j	83	94.495	Scleropages_formosus
ENSSBOG00000025579	-	100	94.872	ENSSMAG00000006729	polr2j	100	94.872	Scophthalmus_maximus
ENSSBOG00000025579	-	100	94.872	ENSSDUG00000018490	polr2j	100	94.872	Seriola_dumerili
ENSSBOG00000025579	-	100	94.872	ENSSLDG00000022354	polr2j	100	94.872	Seriola_lalandi_dorsalis
ENSSBOG00000025579	-	100	100.000	ENSSPUG00000010802	-	100	100.000	Sphenodon_punctatus
ENSSBOG00000025579	-	100	94.872	ENSSPAG00000021953	polr2j	100	94.872	Stegastes_partitus
ENSSBOG00000025579	-	100	82.906	ENSSSCG00000003703	-	83	82.906	Sus_scrofa
ENSSBOG00000025579	-	100	100.000	ENSSSCG00000007688	-	100	100.000	Sus_scrofa
ENSSBOG00000025579	-	85	99.000	ENSTGUG00000004501	-	100	99.000	Taeniopygia_guttata
ENSSBOG00000025579	-	79	100.000	ENSTGUG00000004510	-	100	100.000	Taeniopygia_guttata
ENSSBOG00000025579	-	100	95.726	ENSTRUG00000020842	polr2j	100	95.726	Takifugu_rubripes
ENSSBOG00000025579	-	100	94.872	ENSTNIG00000002994	polr2j	100	94.872	Tetraodon_nigroviridis
ENSSBOG00000025579	-	91	82.243	ENSTBEG00000005797	-	70	82.243	Tupaia_belangeri
ENSSBOG00000025579	-	100	100.000	ENSUAMG00000011310	-	100	100.000	Ursus_americanus
ENSSBOG00000025579	-	100	100.000	ENSUMAG00000012594	-	100	100.000	Ursus_maritimus
ENSSBOG00000025579	-	100	98.291	ENSXETG00000001108	polr2j	100	98.291	Xenopus_tropicalis
ENSSBOG00000025579	-	100	94.872	ENSXMAG00000012422	polr2j	100	94.872	Xiphophorus_maculatus