EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSBOG00000027177 (Gene tree)
Gene ID: 101052216
Gene Symbol: CPSF1
Alias: CPSF160
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Saimiri_boliviensis_boliviensis
Status: putative
Strand: Plus strand
Length: 9033 bases
Position: chrJH378258.1:561304-570336
Accession: 2324
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSBOP00000021283	CPSF_A	PF03178.15	2.6e-91	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSBOT00000038119	CPSF1-201	4185	XM_003942046	ENSSBOP00000021283	1394 (aa)	XP_003942095	A0A2K6TNP2

Gene Model

Click here to download ENSSBOG00000027177's gene model file

Pathways

Pathway ID	Pathway Name	Source
sbq03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSBOG00000027177's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSBOG00000027177	CPSF1	100	98.853	ENSG00000071894	CPSF1	97	98.853	Homo_sapiens
ENSSBOG00000027177	CPSF1	99	78.392	ENSAPOG00000019621	cpsf1	99	78.492	Acanthochromis_polyacanthus
ENSSBOG00000027177	CPSF1	100	95.061	ENSAMEG00000005557	CPSF1	99	95.061	Ailuropoda_melanoleuca
ENSSBOG00000027177	CPSF1	99	78.495	ENSACIG00000006112	cpsf1	97	78.710	Amphilophus_citrinellus
ENSSBOG00000027177	CPSF1	99	79.872	ENSAOCG00000007120	cpsf1	97	80.014	Amphiprion_ocellaris
ENSSBOG00000027177	CPSF1	99	80.157	ENSAPEG00000005755	cpsf1	97	80.300	Amphiprion_percula
ENSSBOG00000027177	CPSF1	99	78.491	ENSATEG00000011097	cpsf1	99	78.397	Anabas_testudineus
ENSSBOG00000027177	CPSF1	92	81.298	ENSACAG00000009655	CPSF1	96	81.298	Anolis_carolinensis
ENSSBOG00000027177	CPSF1	100	99.570	ENSANAG00000036514	CPSF1	97	99.570	Aotus_nancymaae
ENSSBOG00000027177	CPSF1	99	78.762	ENSACLG00000012231	cpsf1	99	78.692	Astatotilapia_calliptera
ENSSBOG00000027177	CPSF1	99	74.103	ENSAMXG00000008485	cpsf1	96	74.175	Astyanax_mexicanus
ENSSBOG00000027177	CPSF1	100	94.444	ENSBTAG00000008355	CPSF1	100	94.816	Bos_taurus
ENSSBOG00000027177	CPSF1	99	32.736	WBGene00022301	cpsf-1	100	40.282	Caenorhabditis_elegans
ENSSBOG00000027177	CPSF1	100	99.570	ENSCJAG00000021421	CPSF1	97	99.570	Callithrix_jacchus
ENSSBOG00000027177	CPSF1	100	96.206	ENSCAFG00000001600	CPSF1	100	96.480	Canis_familiaris
ENSSBOG00000027177	CPSF1	100	96.206	ENSCAFG00020020821	CPSF1	97	96.206	Canis_lupus_dingo
ENSSBOG00000027177	CPSF1	100	90.592	ENSCHIG00000015833	CPSF1	97	90.592	Capra_hircus
ENSSBOG00000027177	CPSF1	100	97.848	ENSTSYG00000028560	CPSF1	97	97.848	Carlito_syrichta
ENSSBOG00000027177	CPSF1	100	95.265	ENSCAPG00000014921	CPSF1	99	95.265	Cavia_aperea
ENSSBOG00000027177	CPSF1	100	94.767	ENSCPOG00000011448	CPSF1	97	94.767	Cavia_porcellus
ENSSBOG00000027177	CPSF1	100	99.570	ENSCCAG00000037658	CPSF1	97	99.570	Cebus_capucinus
ENSSBOG00000027177	CPSF1	100	98.637	ENSCATG00000037234	CPSF1	97	98.637	Cercocebus_atys
ENSSBOG00000027177	CPSF1	100	96.485	ENSCLAG00000012166	CPSF1	97	96.485	Chinchilla_lanigera
ENSSBOG00000027177	CPSF1	100	98.780	ENSCSAG00000008502	CPSF1	97	98.780	Chlorocebus_sabaeus
ENSSBOG00000027177	CPSF1	99	87.455	ENSCPBG00000018910	CPSF1	93	87.455	Chrysemys_picta_bellii
ENSSBOG00000027177	CPSF1	95	48.363	ENSCING00000000514	-	96	48.289	Ciona_intestinalis
ENSSBOG00000027177	CPSF1	99	47.972	ENSCSAVG00000002293	-	98	49.765	Ciona_savignyi
ENSSBOG00000027177	CPSF1	100	94.695	ENSCANG00000032760	CPSF1	97	94.695	Colobus_angolensis_palliatus
ENSSBOG00000027177	CPSF1	100	96.413	ENSCGRG00001016344	Cpsf1	97	96.413	Cricetulus_griseus_chok1gshd
ENSSBOG00000027177	CPSF1	100	94.261	ENSCGRG00000003118	Cpsf1	97	94.261	Cricetulus_griseus_crigri
ENSSBOG00000027177	CPSF1	99	78.065	ENSCSEG00000013464	cpsf1	99	77.850	Cynoglossus_semilaevis
ENSSBOG00000027177	CPSF1	88	77.153	ENSCVAG00000014059	cpsf1	100	75.926	Cyprinodon_variegatus
ENSSBOG00000027177	CPSF1	99	80.287	ENSDARG00000034178	cpsf1	97	80.100	Danio_rerio
ENSSBOG00000027177	CPSF1	55	96.232	ENSDNOG00000043654	CPSF1	88	96.232	Dasypus_novemcinctus
ENSSBOG00000027177	CPSF1	99	95.980	ENSDORG00000006278	Cpsf1	99	95.980	Dipodomys_ordii
ENSSBOG00000027177	CPSF1	99	45.684	FBgn0024698	Cpsf160	96	45.576	Drosophila_melanogaster
ENSSBOG00000027177	CPSF1	80	97.315	ENSETEG00000006022	CPSF1	79	97.315	Echinops_telfairi
ENSSBOG00000027177	CPSF1	100	96.994	ENSEASG00005010774	CPSF1	97	96.994	Equus_asinus_asinus
ENSSBOG00000027177	CPSF1	100	96.994	ENSECAG00000022209	CPSF1	97	96.994	Equus_caballus
ENSSBOG00000027177	CPSF1	99	95.445	ENSEEUG00000000471	CPSF1	96	95.445	Erinaceus_europaeus
ENSSBOG00000027177	CPSF1	99	78.723	ENSELUG00000012271	cpsf1	100	78.459	Esox_lucius
ENSSBOG00000027177	CPSF1	100	96.557	ENSFDAG00000016060	CPSF1	97	96.557	Fukomys_damarensis
ENSSBOG00000027177	CPSF1	99	77.389	ENSFHEG00000016801	cpsf1	97	77.461	Fundulus_heteroclitus
ENSSBOG00000027177	CPSF1	99	78.230	ENSGMOG00000000796	cpsf1	97	78.658	Gadus_morhua
ENSSBOG00000027177	CPSF1	95	85.714	ENSGAFG00000018890	cpsf1	96	85.714	Gambusia_affinis
ENSSBOG00000027177	CPSF1	99	79.033	ENSGACG00000008703	cpsf1	97	79.119	Gasterosteus_aculeatus
ENSSBOG00000027177	CPSF1	99	83.788	ENSGAGG00000004276	CPSF1	98	87.248	Gopherus_agassizii
ENSSBOG00000027177	CPSF1	100	98.996	ENSGGOG00000016185	CPSF1	97	98.996	Gorilla_gorilla
ENSSBOG00000027177	CPSF1	99	80.072	ENSHBUG00000018900	cpsf1	96	80.215	Haplochromis_burtoni
ENSSBOG00000027177	CPSF1	100	96.413	ENSHGLG00000016139	CPSF1	97	96.413	Heterocephalus_glaber_female
ENSSBOG00000027177	CPSF1	100	96.341	ENSHGLG00100009750	CPSF1	97	96.341	Heterocephalus_glaber_male
ENSSBOG00000027177	CPSF1	99	77.512	ENSHCOG00000018509	cpsf1	97	77.356	Hippocampus_comes
ENSSBOG00000027177	CPSF1	99	77.022	ENSIPUG00000011259	cpsf1	97	76.868	Ictalurus_punctatus
ENSSBOG00000027177	CPSF1	100	96.640	ENSSTOG00000009957	CPSF1	99	96.640	Ictidomys_tridecemlineatus
ENSSBOG00000027177	CPSF1	100	96.341	ENSJJAG00000023002	Cpsf1	97	96.341	Jaculus_jaculus
ENSSBOG00000027177	CPSF1	90	85.893	ENSKMAG00000001940	cpsf1	96	85.893	Kryptolebias_marmoratus
ENSSBOG00000027177	CPSF1	99	77.575	ENSLBEG00000003601	cpsf1	97	77.960	Labrus_bergylta
ENSSBOG00000027177	CPSF1	84	81.250	ENSLACG00000000233	CPSF1	95	68.440	Latimeria_chalumnae
ENSSBOG00000027177	CPSF1	99	78.199	ENSLOCG00000008484	cpsf1	97	78.485	Lepisosteus_oculatus
ENSSBOG00000027177	CPSF1	100	95.419	ENSLAFG00000022601	CPSF1	99	95.419	Loxodonta_africana
ENSSBOG00000027177	CPSF1	100	98.637	ENSMFAG00000037013	CPSF1	97	98.637	Macaca_fascicularis
ENSSBOG00000027177	CPSF1	100	98.709	ENSMMUG00000007380	CPSF1	97	98.709	Macaca_mulatta
ENSSBOG00000027177	CPSF1	100	98.780	ENSMNEG00000043564	CPSF1	100	98.780	Macaca_nemestrina
ENSSBOG00000027177	CPSF1	100	98.780	ENSMLEG00000043010	CPSF1	97	98.780	Mandrillus_leucophaeus
ENSSBOG00000027177	CPSF1	99	78.940	ENSMAMG00000003803	cpsf1	99	78.741	Mastacembelus_armatus
ENSSBOG00000027177	CPSF1	99	78.618	ENSMZEG00005001168	cpsf1	97	78.762	Maylandia_zebra
ENSSBOG00000027177	CPSF1	100	96.270	ENSMAUG00000003601	Cpsf1	97	96.270	Mesocricetus_auratus
ENSSBOG00000027177	CPSF1	100	97.633	ENSMICG00000015767	CPSF1	97	97.633	Microcebus_murinus
ENSSBOG00000027177	CPSF1	100	96.341	ENSMOCG00000022758	Cpsf1	97	96.341	Microtus_ochrogaster
ENSSBOG00000027177	CPSF1	99	79.397	ENSMMOG00000021245	cpsf1	96	79.541	Mola_mola
ENSSBOG00000027177	CPSF1	99	93.143	ENSMODG00000010755	CPSF1	97	93.143	Monodelphis_domestica
ENSSBOG00000027177	CPSF1	99	78.151	ENSMALG00000020545	cpsf1	97	78.182	Monopterus_albus
ENSSBOG00000027177	CPSF1	100	96.557	MGP_CAROLIEiJ_G0019936	Cpsf1	97	96.557	Mus_caroli
ENSSBOG00000027177	CPSF1	100	96.485	ENSMUSG00000034022	Cpsf1	97	96.485	Mus_musculus
ENSSBOG00000027177	CPSF1	100	96.413	MGP_PahariEiJ_G0019946	Cpsf1	97	96.413	Mus_pahari
ENSSBOG00000027177	CPSF1	100	96.485	MGP_SPRETEiJ_G0020839	Cpsf1	97	96.485	Mus_spretus
ENSSBOG00000027177	CPSF1	97	95.778	ENSMPUG00000006419	CPSF1	93	95.778	Mustela_putorius_furo
ENSSBOG00000027177	CPSF1	100	96.270	ENSNGAG00000022460	Cpsf1	97	96.270	Nannospalax_galili
ENSSBOG00000027177	CPSF1	99	75.832	ENSNBRG00000000813	cpsf1	96	75.832	Neolamprologus_brichardi
ENSSBOG00000027177	CPSF1	85	86.777	ENSNLEG00000010633	-	100	90.278	Nomascus_leucogenys
ENSSBOG00000027177	CPSF1	85	96.512	ENSMEUG00000014922	CPSF1	85	96.512	Notamacropus_eugenii
ENSSBOG00000027177	CPSF1	63	97.449	ENSOPRG00000004693	-	71	97.449	Ochotona_princeps
ENSSBOG00000027177	CPSF1	100	96.628	ENSODEG00000013995	CPSF1	97	96.628	Octodon_degus
ENSSBOG00000027177	CPSF1	99	80.287	ENSONIG00000007676	cpsf1	97	80.502	Oreochromis_niloticus
ENSSBOG00000027177	CPSF1	60	91.429	ENSOANG00000010716	CPSF1	88	91.429	Ornithorhynchus_anatinus
ENSSBOG00000027177	CPSF1	99	78.076	ENSORLG00000013544	cpsf1	92	87.243	Oryzias_latipes
ENSSBOG00000027177	CPSF1	99	78.218	ENSORLG00020021693	cpsf1	92	87.243	Oryzias_latipes_hni
ENSSBOG00000027177	CPSF1	99	78.061	ENSORLG00015009979	cpsf1	97	77.833	Oryzias_latipes_hsok
ENSSBOG00000027177	CPSF1	99	77.864	ENSOMEG00000011849	cpsf1	97	78.154	Oryzias_melastigma
ENSSBOG00000027177	CPSF1	99	97.559	ENSOGAG00000000315	CPSF1	97	97.559	Otolemur_garnettii
ENSSBOG00000027177	CPSF1	100	99.067	ENSPPAG00000019280	CPSF1	97	99.067	Pan_paniscus
ENSSBOG00000027177	CPSF1	100	99.067	ENSPTRG00000049288	-	97	99.067	Pan_troglodytes
ENSSBOG00000027177	CPSF1	100	97.322	ENSPTRG00000051253	-	97	97.322	Pan_troglodytes
ENSSBOG00000027177	CPSF1	100	98.637	ENSPANG00000015005	CPSF1	100	98.637	Papio_anubis
ENSSBOG00000027177	CPSF1	99	81.615	ENSPKIG00000002582	cpsf1	100	81.543	Paramormyrops_kingsleyae
ENSSBOG00000027177	CPSF1	99	93.071	ENSPCIG00000009035	CPSF1	97	93.071	Phascolarctos_cinereus
ENSSBOG00000027177	CPSF1	99	76.821	ENSPFOG00000012870	cpsf1	97	76.923	Poecilia_formosa
ENSSBOG00000027177	CPSF1	99	76.693	ENSPREG00000016307	cpsf1	97	76.660	Poecilia_reticulata
ENSSBOG00000027177	CPSF1	100	90.459	ENSPPYG00000018973	CPSF1	96	90.459	Pongo_abelii
ENSSBOG00000027177	CPSF1	94	94.886	ENSPCAG00000011541	CPSF1	94	94.886	Procavia_capensis
ENSSBOG00000027177	CPSF1	100	93.548	ENSPCOG00000020001	CPSF1	97	93.548	Propithecus_coquereli
ENSSBOG00000027177	CPSF1	90	98.571	ENSPVAG00000006761	CPSF1	88	98.571	Pteropus_vampyrus
ENSSBOG00000027177	CPSF1	99	78.996	ENSPNYG00000004906	cpsf1	99	78.762	Pundamilia_nyererei
ENSSBOG00000027177	CPSF1	99	75.430	ENSPNAG00000024395	cpsf1	97	75.430	Pygocentrus_nattereri
ENSSBOG00000027177	CPSF1	100	96.485	ENSRNOG00000030705	Cpsf1	97	96.485	Rattus_norvegicus
ENSSBOG00000027177	CPSF1	100	98.637	ENSRBIG00000044907	CPSF1	97	98.637	Rhinopithecus_bieti
ENSSBOG00000027177	CPSF1	100	98.565	ENSRROG00000044861	CPSF1	97	98.565	Rhinopithecus_roxellana
ENSSBOG00000027177	CPSF1	99	92.929	ENSSHAG00000006500	CPSF1	97	92.929	Sarcophilus_harrisii
ENSSBOG00000027177	CPSF1	98	81.236	ENSSFOG00015004606	cpsf1	100	81.309	Scleropages_formosus
ENSSBOG00000027177	CPSF1	99	78.221	ENSSMAG00000020547	cpsf1	97	78.252	Scophthalmus_maximus
ENSSBOG00000027177	CPSF1	99	80.115	ENSSDUG00000001100	cpsf1	96	80.476	Seriola_dumerili
ENSSBOG00000027177	CPSF1	99	80.389	ENSSLDG00000003619	cpsf1	96	80.461	Seriola_lalandi_dorsalis
ENSSBOG00000027177	CPSF1	89	92.805	ENSSARG00000003643	CPSF1	88	92.805	Sorex_araneus
ENSSBOG00000027177	CPSF1	99	87.527	ENSSPUG00000014396	CPSF1	100	87.527	Sphenodon_punctatus
ENSSBOG00000027177	CPSF1	99	78.376	ENSSPAG00000005349	cpsf1	97	78.477	Stegastes_partitus
ENSSBOG00000027177	CPSF1	100	95.777	ENSSSCG00000005906	CPSF1	97	95.777	Sus_scrofa
ENSSBOG00000027177	CPSF1	99	77.832	ENSTRUG00000013134	cpsf1	99	77.972	Takifugu_rubripes
ENSSBOG00000027177	CPSF1	99	79.217	ENSTNIG00000014027	cpsf1	97	79.288	Tetraodon_nigroviridis
ENSSBOG00000027177	CPSF1	77	93.832	ENSTBEG00000001756	CPSF1	90	93.832	Tupaia_belangeri
ENSSBOG00000027177	CPSF1	89	96.891	ENSTTRG00000001937	CPSF1	86	96.891	Tursiops_truncatus
ENSSBOG00000027177	CPSF1	100	96.779	ENSUAMG00000006476	CPSF1	98	96.779	Ursus_americanus
ENSSBOG00000027177	CPSF1	99	78.530	ENSXCOG00000003608	cpsf1	96	78.674	Xiphophorus_couchianus
ENSSBOG00000027177	CPSF1	99	77.818	ENSXMAG00000005798	cpsf1	96	78.105	Xiphophorus_maculatus