EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSBOG00000028172 (Gene tree)
Gene ID: -
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Saimiri_boliviensis_boliviensis
Status: putative
Strand: Plus strand
Length: 77505 bases
Position: chrJH378365.1:16655-94159
Accession: 20320
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSBOP00000023344	RRM_1	PF00076.22	5.1e-16	1	1
ENSSBOP00000023341	RRM_1	PF00076.22	7.9e-16	1	1
ENSSBOP00000023337	RRM_1	PF00076.22	1.7e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSBOT00000040196	PSPC1-202	1068	-	ENSSBOP00000023341	355 (aa)	-	A0A2K6TUK6
ENSSBOT00000040201	PSPC1-204	927	-	ENSSBOP00000023346	308 (aa)	-	A0A2K6TUL1
ENSSBOT00000040192	PSPC1-201	1365	XM_010332983	ENSSBOP00000023337	454 (aa)	XP_010331285	A0A2K6TUK3
ENSSBOT00000040199	PSPC1-203	918	-	ENSSBOP00000023344	305 (aa)	-	A0A2K6TUL3

Gene Model

Click here to download ENSSBOG00000028172's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSBOG00000028172's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSBOG00000028172	PSPC1	67	59.024	ENSSBOG00000033925	-	75	46.693
ENSSBOG00000028172	PSPC1	79	72.083	ENSSBOG00000032772	-	59	68.953
ENSSBOG00000028172	PSPC1	51	59.615	ENSSBOG00000023807	-	90	59.615
ENSSBOG00000028172	PSPC1	77	75.210	ENSSBOG00000024972	-	80	55.944
ENSSBOG00000028172	PSPC1	84	58.140	ENSSBOG00000018932	-	54	58.921
ENSSBOG00000028172	PSPC1	53	63.354	ENSSBOG00000021974	-	94	63.354
ENSSBOG00000028172	PSPC1	52	65.823	ENSSBOG00000033417	-	91	65.823
ENSSBOG00000028172	PSPC1	79	67.500	ENSSBOG00000027683	-	56	65.568

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSBOG00000028172	PSPC1	89	97.417	ENSG00000121390	PSPC1	79	89.104	Homo_sapiens
ENSSBOG00000028172	PSPC1	90	78.986	ENSAPOG00000015946	pspc1	78	59.441	Acanthochromis_polyacanthus
ENSSBOG00000028172	PSPC1	90	95.290	ENSAMEG00000017420	PSPC1	79	88.620	Ailuropoda_melanoleuca
ENSSBOG00000028172	PSPC1	89	71.481	ENSACIG00000018695	pspc1	77	59.406	Amphilophus_citrinellus
ENSSBOG00000028172	PSPC1	90	78.261	ENSAOCG00000005279	pspc1	78	59.251	Amphiprion_ocellaris
ENSSBOG00000028172	PSPC1	90	78.261	ENSAPEG00000015927	pspc1	69	63.613	Amphiprion_percula
ENSSBOG00000028172	PSPC1	90	64.130	ENSATEG00000004878	pspc1	77	58.722	Anabas_testudineus
ENSSBOG00000028172	PSPC1	87	96.981	ENSAPLG00000006246	PSPC1	99	86.816	Anas_platyrhynchos
ENSSBOG00000028172	PSPC1	90	92.058	ENSACAG00000002093	PSPC1	79	80.576	Anolis_carolinensis
ENSSBOG00000028172	PSPC1	90	95.290	ENSANAG00000000059	PSPC1	78	93.862	Aotus_nancymaae
ENSSBOG00000028172	PSPC1	98	64.495	ENSACLG00000027220	pspc1	77	57.635	Astatotilapia_calliptera
ENSSBOG00000028172	PSPC1	90	76.241	ENSAMXG00000036881	pspc1	79	58.508	Astyanax_mexicanus
ENSSBOG00000028172	PSPC1	90	95.290	ENSBTAG00000003934	PSPC1	79	91.729	Bos_taurus
ENSSBOG00000028172	PSPC1	90	95.290	ENSCJAG00000004554	PSPC1	78	94.588	Callithrix_jacchus
ENSSBOG00000028172	PSPC1	90	95.290	ENSCAFG00020002009	PSPC1	79	88.620	Canis_lupus_dingo
ENSSBOG00000028172	PSPC1	90	95.290	ENSCHIG00000016708	PSPC1	79	88.378	Capra_hircus
ENSSBOG00000028172	PSPC1	93	85.135	ENSTSYG00000032882	PSPC1	99	85.135	Carlito_syrichta
ENSSBOG00000028172	PSPC1	91	94.624	ENSCPOG00000000395	PSPC1	79	87.651	Cavia_porcellus
ENSSBOG00000028172	PSPC1	90	95.290	ENSCCAG00000033498	PSPC1	79	88.862	Cebus_capucinus
ENSSBOG00000028172	PSPC1	88	98.134	ENSCATG00000036434	PSPC1	74	98.134	Cercocebus_atys
ENSSBOG00000028172	PSPC1	89	97.426	ENSCLAG00000005241	PSPC1	89	90.250	Chinchilla_lanigera
ENSSBOG00000028172	PSPC1	90	95.290	ENSCHOG00000008913	PSPC1	79	81.114	Choloepus_hoffmanni
ENSSBOG00000028172	PSPC1	90	91.697	ENSCPBG00000020859	PSPC1	79	83.575	Chrysemys_picta_bellii
ENSSBOG00000028172	PSPC1	90	98.201	ENSCANG00000018948	PSPC1	92	98.201	Colobus_angolensis_palliatus
ENSSBOG00000028172	PSPC1	90	95.290	ENSCGRG00001018368	Pspc1	79	87.893	Cricetulus_griseus_chok1gshd
ENSSBOG00000028172	PSPC1	90	95.290	ENSCGRG00000011724	Pspc1	79	87.893	Cricetulus_griseus_crigri
ENSSBOG00000028172	PSPC1	89	78.889	ENSCVAG00000007679	-	77	56.174	Cyprinodon_variegatus
ENSSBOG00000028172	PSPC1	90	78.261	ENSDARG00000006621	pspc1	99	59.854	Danio_rerio
ENSSBOG00000028172	PSPC1	90	95.290	ENSDNOG00000011078	PSPC1	79	88.378	Dasypus_novemcinctus
ENSSBOG00000028172	PSPC1	91	96.043	ENSDORG00000016050	Pspc1	80	88.193	Dipodomys_ordii
ENSSBOG00000028172	PSPC1	52	100.000	ENSETEG00000000502	-	60	100.000	Echinops_telfairi
ENSSBOG00000028172	PSPC1	89	73.162	ENSEBUG00000003964	-	50	71.841	Eptatretus_burgeri
ENSSBOG00000028172	PSPC1	78	47.148	ENSEBUG00000010133	pspc1	66	47.860	Eptatretus_burgeri
ENSSBOG00000028172	PSPC1	91	94.624	ENSEASG00005000119	PSPC1	80	89.104	Equus_asinus_asinus
ENSSBOG00000028172	PSPC1	91	94.624	ENSECAG00000017286	PSPC1	80	89.104	Equus_caballus
ENSSBOG00000028172	PSPC1	75	81.863	ENSEEUG00000011288	-	67	78.469	Erinaceus_europaeus
ENSSBOG00000028172	PSPC1	88	82.022	ENSELUG00000003746	pspc1	66	79.636	Esox_lucius
ENSSBOG00000028172	PSPC1	88	97.770	ENSFCAG00000027841	PSPC1	79	88.862	Felis_catus
ENSSBOG00000028172	PSPC1	90	92.419	ENSFALG00000008750	PSPC1	78	84.058	Ficedula_albicollis
ENSSBOG00000028172	PSPC1	90	95.290	ENSFDAG00000002617	PSPC1	81	87.651	Fukomys_damarensis
ENSSBOG00000028172	PSPC1	79	80.000	ENSGMOG00000015074	pspc1	77	56.582	Gadus_morhua
ENSSBOG00000028172	PSPC1	90	92.419	ENSGALG00000017142	PSPC1	79	84.058	Gallus_gallus
ENSSBOG00000028172	PSPC1	89	78.676	ENSGAFG00000006327	pspc1	55	80.075	Gambusia_affinis
ENSSBOG00000028172	PSPC1	89	73.063	ENSGACG00000014901	pspc1	85	66.997	Gasterosteus_aculeatus
ENSSBOG00000028172	PSPC1	90	91.697	ENSGAGG00000019164	PSPC1	79	83.575	Gopherus_agassizii
ENSSBOG00000028172	PSPC1	89	97.417	ENSGGOG00000003414	PSPC1	79	88.862	Gorilla_gorilla
ENSSBOG00000028172	PSPC1	96	73.333	ENSHBUG00000001139	pspc1	78	59.569	Haplochromis_burtoni
ENSSBOG00000028172	PSPC1	90	95.290	ENSHGLG00000018811	PSPC1	79	87.651	Heterocephalus_glaber_female
ENSSBOG00000028172	PSPC1	76	97.845	ENSHGLG00100007962	PSPC1	71	97.845	Heterocephalus_glaber_male
ENSSBOG00000028172	PSPC1	88	74.349	ENSHCOG00000013251	pspc1	62	70.397	Hippocampus_comes
ENSSBOG00000028172	PSPC1	90	80.435	ENSIPUG00000013192	pspc1	79	60.993	Ictalurus_punctatus
ENSSBOG00000028172	PSPC1	91	94.624	ENSSTOG00000026833	PSPC1	79	88.620	Ictidomys_tridecemlineatus
ENSSBOG00000028172	PSPC1	90	94.928	ENSJJAG00000018334	Pspc1	79	87.893	Jaculus_jaculus
ENSSBOG00000028172	PSPC1	76	68.670	ENSKMAG00000013525	-	74	49.741	Kryptolebias_marmoratus
ENSSBOG00000028172	PSPC1	90	77.536	ENSLBEG00000004474	pspc1	56	81.298	Labrus_bergylta
ENSSBOG00000028172	PSPC1	88	85.874	ENSLACG00000010762	PSPC1	79	75.362	Latimeria_chalumnae
ENSSBOG00000028172	PSPC1	90	85.145	ENSLOCG00000010832	pspc1	81	75.545	Lepisosteus_oculatus
ENSSBOG00000028172	PSPC1	90	95.290	ENSLAFG00000010968	PSPC1	79	88.620	Loxodonta_africana
ENSSBOG00000028172	PSPC1	88	98.134	ENSMFAG00000032728	PSPC1	75	98.134	Macaca_fascicularis
ENSSBOG00000028172	PSPC1	90	97.810	ENSMMUG00000020262	PSPC1	74	97.426	Macaca_mulatta
ENSSBOG00000028172	PSPC1	90	95.290	ENSMNEG00000027401	PSPC1	79	88.862	Macaca_nemestrina
ENSSBOG00000028172	PSPC1	86	100.000	ENSMLEG00000039043	PSPC1	94	91.729	Mandrillus_leucophaeus
ENSSBOG00000028172	PSPC1	90	77.536	ENSMAMG00000004333	pspc1	77	62.162	Mastacembelus_armatus
ENSSBOG00000028172	PSPC1	98	64.495	ENSMZEG00005005726	pspc1	77	57.635	Maylandia_zebra
ENSSBOG00000028172	PSPC1	88	95.911	ENSMGAG00000015134	PSPC1	100	86.207	Meleagris_gallopavo
ENSSBOG00000028172	PSPC1	88	88.433	ENSMAUG00000021067	Pspc1	73	91.291	Mesocricetus_auratus
ENSSBOG00000028172	PSPC1	91	94.624	ENSMICG00000013970	PSPC1	79	88.620	Microcebus_murinus
ENSSBOG00000028172	PSPC1	90	95.290	ENSMOCG00000006060	Pspc1	79	87.893	Microtus_ochrogaster
ENSSBOG00000028172	PSPC1	88	97.761	ENSMODG00000008029	PSPC1	59	87.193	Monodelphis_domestica
ENSSBOG00000028172	PSPC1	90	75.725	ENSMALG00000008914	pspc1	76	59.466	Monopterus_albus
ENSSBOG00000028172	PSPC1	90	94.946	MGP_CAROLIEiJ_G0019341	Pspc1	79	87.681	Mus_caroli
ENSSBOG00000028172	PSPC1	90	94.946	ENSMUSG00000021938	Pspc1	79	87.923	Mus_musculus
ENSSBOG00000028172	PSPC1	90	94.946	MGP_PahariEiJ_G0030359	Pspc1	79	88.164	Mus_pahari
ENSSBOG00000028172	PSPC1	90	94.946	MGP_SPRETEiJ_G0020232	Pspc1	79	87.923	Mus_spretus
ENSSBOG00000028172	PSPC1	90	95.290	ENSMPUG00000013347	PSPC1	79	88.620	Mustela_putorius_furo
ENSSBOG00000028172	PSPC1	90	93.907	ENSMLUG00000017663	PSPC1	79	87.500	Myotis_lucifugus
ENSSBOG00000028172	PSPC1	90	95.290	ENSNGAG00000011271	Pspc1	79	87.893	Nannospalax_galili
ENSSBOG00000028172	PSPC1	96	66.667	ENSNBRG00000014059	pspc1	63	72.308	Neolamprologus_brichardi
ENSSBOG00000028172	PSPC1	90	95.290	ENSNLEG00000001294	PSPC1	79	89.104	Nomascus_leucogenys
ENSSBOG00000028172	PSPC1	69	98.413	ENSMEUG00000000476	PSPC1	65	91.096	Notamacropus_eugenii
ENSSBOG00000028172	PSPC1	88	76.866	ENSODEG00000007817	-	78	81.034	Octodon_degus
ENSSBOG00000028172	PSPC1	88	89.179	ENSODEG00000019012	-	78	81.343	Octodon_degus
ENSSBOG00000028172	PSPC1	96	74.000	ENSONIG00000012010	pspc1	78	58.962	Oreochromis_niloticus
ENSSBOG00000028172	PSPC1	88	71.642	ENSOANG00000011381	-	80	67.259	Ornithorhynchus_anatinus
ENSSBOG00000028172	PSPC1	86	99.618	ENSOANG00000009017	-	100	88.972	Ornithorhynchus_anatinus
ENSSBOG00000028172	PSPC1	90	95.290	ENSOCUG00000006153	PSPC1	79	88.378	Oryctolagus_cuniculus
ENSSBOG00000028172	PSPC1	91	76.140	ENSORLG00000004232	-	77	57.176	Oryzias_latipes
ENSSBOG00000028172	PSPC1	91	75.439	ENSORLG00020000578	PSPC1	77	59.080	Oryzias_latipes_hni
ENSSBOG00000028172	PSPC1	88	80.224	ENSORLG00015017480	pspc1	72	61.316	Oryzias_latipes_hsok
ENSSBOG00000028172	PSPC1	69	82.857	ENSOMEG00000003779	pspc1	96	82.775	Oryzias_melastigma
ENSSBOG00000028172	PSPC1	90	95.290	ENSOGAG00000012643	PSPC1	79	88.862	Otolemur_garnettii
ENSSBOG00000028172	PSPC1	90	94.604	ENSOARG00000014163	PSPC1	86	87.952	Ovis_aries
ENSSBOG00000028172	PSPC1	90	98.182	ENSPPAG00000009836	PSPC1	86	95.561	Pan_paniscus
ENSSBOG00000028172	PSPC1	90	95.290	ENSPPRG00000008833	PSPC1	79	88.862	Panthera_pardus
ENSSBOG00000028172	PSPC1	94	89.803	ENSPTIG00000016917	PSPC1	95	84.035	Panthera_tigris_altaica
ENSSBOG00000028172	PSPC1	89	97.417	ENSPTRG00000005677	PSPC1	77	93.583	Pan_troglodytes
ENSSBOG00000028172	PSPC1	88	98.134	ENSPANG00000001992	PSPC1	74	98.134	Papio_anubis
ENSSBOG00000028172	PSPC1	91	81.949	ENSPKIG00000003578	pspc1	80	64.403	Paramormyrops_kingsleyae
ENSSBOG00000028172	PSPC1	90	91.336	ENSPSIG00000005168	PSPC1	79	83.333	Pelodiscus_sinensis
ENSSBOG00000028172	PSPC1	76	75.966	ENSPMGG00000015135	pspc1	66	73.333	Periophthalmus_magnuspinnatus
ENSSBOG00000028172	PSPC1	90	95.290	ENSPEMG00000015214	Pspc1	79	88.136	Peromyscus_maniculatus_bairdii
ENSSBOG00000028172	PSPC1	65	49.756	ENSPMAG00000004618	pspc1	62	49.756	Petromyzon_marinus
ENSSBOG00000028172	PSPC1	90	94.928	ENSPCIG00000017680	PSPC1	79	86.441	Phascolarctos_cinereus
ENSSBOG00000028172	PSPC1	86	79.401	ENSPFOG00000003362	pspc1	79	58.275	Poecilia_formosa
ENSSBOG00000028172	PSPC1	86	79.401	ENSPLAG00000011540	pspc1	78	58.275	Poecilia_latipinna
ENSSBOG00000028172	PSPC1	86	79.026	ENSPMEG00000008322	pspc1	78	58.042	Poecilia_mexicana
ENSSBOG00000028172	PSPC1	90	75.445	ENSPREG00000007786	pspc1	78	58.275	Poecilia_reticulata
ENSSBOG00000028172	PSPC1	90	95.290	ENSPPYG00000005186	PSPC1	79	88.620	Pongo_abelii
ENSSBOG00000028172	PSPC1	91	94.946	ENSPCOG00000014364	PSPC1	78	82.567	Propithecus_coquereli
ENSSBOG00000028172	PSPC1	90	94.928	ENSPVAG00000005036	PSPC1	80	84.988	Pteropus_vampyrus
ENSSBOG00000028172	PSPC1	98	64.495	ENSPNYG00000008893	pspc1	77	57.635	Pundamilia_nyererei
ENSSBOG00000028172	PSPC1	89	80.370	ENSPNAG00000016511	pspc1	80	62.884	Pygocentrus_nattereri
ENSSBOG00000028172	PSPC1	90	95.290	ENSRNOG00000020782	Pspc1	79	87.893	Rattus_norvegicus
ENSSBOG00000028172	PSPC1	88	98.134	ENSRBIG00000036057	PSPC1	85	89.104	Rhinopithecus_bieti
ENSSBOG00000028172	PSPC1	91	94.624	ENSRROG00000036334	PSPC1	79	89.104	Rhinopithecus_roxellana
ENSSBOG00000028172	PSPC1	88	87.778	ENSSHAG00000004696	PSPC1	79	86.024	Sarcophilus_harrisii
ENSSBOG00000028172	PSPC1	90	84.058	ENSSFOG00015001395	pspc1	78	70.190	Scleropages_formosus
ENSSBOG00000028172	PSPC1	89	77.256	ENSSMAG00000001761	pspc1	69	77.256	Scophthalmus_maximus
ENSSBOG00000028172	PSPC1	90	79.348	ENSSDUG00000010651	pspc1	67	64.136	Seriola_dumerili
ENSSBOG00000028172	PSPC1	89	72.963	ENSSLDG00000004284	pspc1	76	58.010	Seriola_lalandi_dorsalis
ENSSBOG00000028172	PSPC1	90	84.783	ENSSARG00000000888	PSPC1	80	87.409	Sorex_araneus
ENSSBOG00000028172	PSPC1	90	78.623	ENSSPUG00000008550	PSPC1	78	80.000	Sphenodon_punctatus
ENSSBOG00000028172	PSPC1	90	78.623	ENSSPAG00000001921	pspc1	79	56.979	Stegastes_partitus
ENSSBOG00000028172	PSPC1	92	93.929	ENSSSCG00000009569	PSPC1	79	88.620	Sus_scrofa
ENSSBOG00000028172	PSPC1	90	92.419	ENSTGUG00000011295	PSPC1	89	84.058	Taeniopygia_guttata
ENSSBOG00000028172	PSPC1	88	71.642	ENSTRUG00000011335	pspc1	68	57.459	Takifugu_rubripes
ENSSBOG00000028172	PSPC1	88	73.507	ENSTNIG00000010358	pspc1	77	55.012	Tetraodon_nigroviridis
ENSSBOG00000028172	PSPC1	86	99.618	ENSTBEG00000002361	PSPC1	51	99.618	Tupaia_belangeri
ENSSBOG00000028172	PSPC1	90	95.290	ENSTTRG00000003343	PSPC1	80	88.620	Tursiops_truncatus
ENSSBOG00000028172	PSPC1	76	97.854	ENSUAMG00000012309	PSPC1	67	97.854	Ursus_americanus
ENSSBOG00000028172	PSPC1	90	94.928	ENSUMAG00000013993	PSPC1	85	88.378	Ursus_maritimus
ENSSBOG00000028172	PSPC1	86	100.000	ENSVPAG00000010029	PSPC1	100	91.980	Vicugna_pacos
ENSSBOG00000028172	PSPC1	91	95.307	ENSVVUG00000006414	PSPC1	70	98.141	Vulpes_vulpes
ENSSBOG00000028172	PSPC1	87	78.947	ENSXCOG00000017438	pspc1	63	78.947	Xiphophorus_couchianus
ENSSBOG00000028172	PSPC1	87	79.323	ENSXMAG00000007929	pspc1	63	79.323	Xiphophorus_maculatus