EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSBOG00000028482 (Gene tree)
Gene ID: 104650382
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saimiri_boliviensis_boliviensis
Status: putative
Strand: Minus strand
Length: 91617 bases
Position: chrJH378105.1:4461644-4553260
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSBOP00000023999	RNA_pol_L_2	PF13656.6	6.1e-28	1	1
ENSSBOP00000023999	RNA_pol_L	PF01193.24	9.9e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSBOT00000040822	-	141	-	ENSSBOP00000023964	46 (aa)	-	A0A2K6TWK4
ENSSBOT00000040832	-	2021	XM_003919724	ENSSBOP00000023974	122 (aa)	XP_003919773	A0A2K6TWL3
ENSSBOT00000040835	-	129	-	ENSSBOP00000023977	42 (aa)	-	A0A2K6TWE4
ENSSBOT00000040858	-	849	XM_010332955	ENSSBOP00000023999	133 (aa)	XP_010331257	A0A2K6TWN6

Gene Model

Click here to download ENSSBOG00000028482's gene model file

Pathways

Pathway ID	Pathway Name	Source
sbq03020	RNA polymerase	KEGG
sbq04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSBOG00000028482's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSBOG00000028482	-	77	32.039	ENSSBOG00000025579	-	85	32.039
ENSSBOG00000028482	-	86	92.982	ENSSBOG00000030146	-	84	92.982
ENSSBOG00000028482	-	100	63.910	ENSSBOG00000022761	-	100	63.910

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSBOG00000028482	-	100	98.496	ENSG00000186184	POLR1D	100	98.496	Homo_sapiens
ENSSBOG00000028482	-	83	67.568	ENSAPOG00000021882	polr1d	98	67.568	Acanthochromis_polyacanthus
ENSSBOG00000028482	-	94	99.200	ENSAMEG00000019095	POLR1D	100	99.200	Ailuropoda_melanoleuca
ENSSBOG00000028482	-	77	74.510	ENSACIG00000013328	polr1d	89	74.510	Amphilophus_citrinellus
ENSSBOG00000028482	-	84	66.964	ENSAOCG00000018500	polr1d	98	66.964	Amphiprion_ocellaris
ENSSBOG00000028482	-	84	66.071	ENSAPEG00000009489	polr1d	98	66.071	Amphiprion_percula
ENSSBOG00000028482	-	80	67.290	ENSATEG00000019322	polr1d	94	67.290	Anabas_testudineus
ENSSBOG00000028482	-	83	65.766	ENSACAG00000015753	POLR1D	96	65.766	Anolis_carolinensis
ENSSBOG00000028482	-	100	100.000	ENSANAG00000024486	POLR1D	100	100.000	Aotus_nancymaae
ENSSBOG00000028482	-	80	71.028	ENSACLG00000023805	polr1d	94	71.028	Astatotilapia_calliptera
ENSSBOG00000028482	-	80	68.868	ENSAMXG00000036118	polr1d	92	68.868	Astyanax_mexicanus
ENSSBOG00000028482	-	100	95.489	ENSBTAG00000033252	-	100	95.489	Bos_taurus
ENSSBOG00000028482	-	100	95.489	ENSBTAG00000008642	POLR1D	100	95.489	Bos_taurus
ENSSBOG00000028482	-	62	37.805	WBGene00010230	rpac-19	57	37.805	Caenorhabditis_elegans
ENSSBOG00000028482	-	100	99.248	ENSCJAG00000044669	POLR1D	100	99.248	Callithrix_jacchus
ENSSBOG00000028482	-	100	99.248	ENSCAFG00000006755	POLR1D	100	99.248	Canis_familiaris
ENSSBOG00000028482	-	100	96.241	ENSCHIG00000021910	POLR1D	100	96.241	Capra_hircus
ENSSBOG00000028482	-	96	83.077	ENSTSYG00000034852	-	98	83.193	Carlito_syrichta
ENSSBOG00000028482	-	93	94.355	ENSTSYG00000026817	-	93	94.355	Carlito_syrichta
ENSSBOG00000028482	-	96	54.688	ENSCAPG00000006058	-	99	54.688	Cavia_aperea
ENSSBOG00000028482	-	96	55.469	ENSCPOG00000030450	-	99	55.469	Cavia_porcellus
ENSSBOG00000028482	-	100	80.451	ENSCCAG00000020191	-	100	80.451	Cebus_capucinus
ENSSBOG00000028482	-	100	98.496	ENSCCAG00000021349	-	100	98.496	Cebus_capucinus
ENSSBOG00000028482	-	100	96.992	ENSCATG00000030710	-	100	96.992	Cercocebus_atys
ENSSBOG00000028482	-	100	86.466	ENSCATG00000022900	-	100	86.466	Cercocebus_atys
ENSSBOG00000028482	-	93	96.774	ENSCLAG00000017623	POLR1D	100	96.774	Chinchilla_lanigera
ENSSBOG00000028482	-	73	78.351	ENSCPBG00000004719	POLR1D	96	78.351	Chrysemys_picta_bellii
ENSSBOG00000028482	-	100	96.992	ENSCANG00000028632	-	100	96.992	Colobus_angolensis_palliatus
ENSSBOG00000028482	-	100	93.985	ENSCANG00000037694	-	100	93.985	Colobus_angolensis_palliatus
ENSSBOG00000028482	-	100	95.489	ENSCGRG00001021251	Polr1d	100	95.489	Cricetulus_griseus_chok1gshd
ENSSBOG00000028482	-	100	95.489	ENSCGRG00000011639	Polr1d	100	95.489	Cricetulus_griseus_crigri
ENSSBOG00000028482	-	77	71.845	ENSCSEG00000018268	polr1d	91	69.159	Cynoglossus_semilaevis
ENSSBOG00000028482	-	79	71.429	ENSCVAG00000018527	polr1d	92	71.429	Cyprinodon_variegatus
ENSSBOG00000028482	-	83	66.364	ENSDARG00000037570	polr1d	98	66.364	Danio_rerio
ENSSBOG00000028482	-	100	93.284	ENSDNOG00000046247	-	100	93.284	Dasypus_novemcinctus
ENSSBOG00000028482	-	100	95.489	ENSDNOG00000043676	-	100	95.489	Dasypus_novemcinctus
ENSSBOG00000028482	-	100	95.489	ENSDORG00000029155	Polr1d	100	95.489	Dipodomys_ordii
ENSSBOG00000028482	-	65	43.023	FBgn0086447	l(2)37Cg	81	43.023	Drosophila_melanogaster
ENSSBOG00000028482	-	93	89.516	ENSETEG00000012797	POLR1D	100	89.516	Echinops_telfairi
ENSSBOG00000028482	-	69	69.565	ENSEBUG00000011748	polr1d	63	69.565	Eptatretus_burgeri
ENSSBOG00000028482	-	96	96.875	ENSEASG00005022487	POLR1D	99	96.875	Equus_asinus_asinus
ENSSBOG00000028482	-	93	97.581	ENSEEUG00000013144	POLR1D	100	97.581	Erinaceus_europaeus
ENSSBOG00000028482	-	80	68.868	ENSELUG00000005105	rpac2	93	68.868	Esox_lucius
ENSSBOG00000028482	-	100	97.744	ENSFCAG00000030162	POLR1D	100	97.744	Felis_catus
ENSSBOG00000028482	-	72	77.083	ENSFALG00000011463	POLR1D	95	77.083	Ficedula_albicollis
ENSSBOG00000028482	-	100	95.489	ENSFDAG00000004463	POLR1D	100	95.489	Fukomys_damarensis
ENSSBOG00000028482	-	82	72.727	ENSFHEG00000015410	polr1d	96	72.727	Fundulus_heteroclitus
ENSSBOG00000028482	-	79	72.381	ENSGAFG00000001693	polr1d	92	72.381	Gambusia_affinis
ENSSBOG00000028482	-	88	68.644	ENSGACG00000018585	polr1d	100	68.644	Gasterosteus_aculeatus
ENSSBOG00000028482	-	81	76.852	ENSGAGG00000008503	POLR1D	95	76.852	Gopherus_agassizii
ENSSBOG00000028482	-	100	98.496	ENSGGOG00000004235	POLR1D	100	98.496	Gorilla_gorilla
ENSSBOG00000028482	-	80	71.028	ENSHBUG00000002111	polr1d	94	71.028	Haplochromis_burtoni
ENSSBOG00000028482	-	100	95.489	ENSHGLG00000003202	POLR1D	100	95.489	Heterocephalus_glaber_female
ENSSBOG00000028482	-	100	95.489	ENSHGLG00100009393	POLR1D	100	95.489	Heterocephalus_glaber_male
ENSSBOG00000028482	-	80	69.159	ENSHCOG00000003258	polr1d	94	69.159	Hippocampus_comes
ENSSBOG00000028482	-	79	72.381	ENSIPUG00000014810	polr1d	91	72.381	Ictalurus_punctatus
ENSSBOG00000028482	-	100	99.248	ENSSTOG00000013877	POLR1D	100	99.248	Ictidomys_tridecemlineatus
ENSSBOG00000028482	-	95	75.397	ENSJJAG00000021667	-	75	75.397	Jaculus_jaculus
ENSSBOG00000028482	-	97	90.226	ENSJJAG00000022671	-	100	93.333	Jaculus_jaculus
ENSSBOG00000028482	-	80	66.981	ENSKMAG00000015256	polr1d	93	66.981	Kryptolebias_marmoratus
ENSSBOG00000028482	-	79	72.381	ENSLBEG00000015919	polr1d	92	72.381	Labrus_bergylta
ENSSBOG00000028482	-	86	66.087	ENSLACG00000006810	POLR1D	95	66.087	Latimeria_chalumnae
ENSSBOG00000028482	-	54	77.027	ENSLOCG00000014976	polr1d	100	77.027	Lepisosteus_oculatus
ENSSBOG00000028482	-	100	88.722	ENSLAFG00000032290	POLR1D	100	88.722	Loxodonta_africana
ENSSBOG00000028482	-	94	96.800	ENSMFAG00000045264	POLR1D	97	96.800	Macaca_fascicularis
ENSSBOG00000028482	-	100	78.195	ENSMMUG00000041570	-	100	78.195	Macaca_mulatta
ENSSBOG00000028482	-	87	97.414	ENSMMUG00000020386	POLR1D	100	97.414	Macaca_mulatta
ENSSBOG00000028482	-	100	97.744	ENSMNEG00000008630	-	100	97.744	Macaca_nemestrina
ENSSBOG00000028482	-	100	81.203	ENSMNEG00000038120	-	100	81.203	Macaca_nemestrina
ENSSBOG00000028482	-	100	97.744	ENSMLEG00000041048	-	100	97.744	Mandrillus_leucophaeus
ENSSBOG00000028482	-	100	87.218	ENSMLEG00000032251	-	100	87.218	Mandrillus_leucophaeus
ENSSBOG00000028482	-	76	71.287	ENSMAMG00000014834	polr1d	94	71.287	Mastacembelus_armatus
ENSSBOG00000028482	-	75	75.000	ENSMZEG00005006638	polr1d	88	75.000	Maylandia_zebra
ENSSBOG00000028482	-	69	78.261	ENSMGAG00000005322	POLR1D	84	78.261	Meleagris_gallopavo
ENSSBOG00000028482	-	100	95.489	ENSMAUG00000001946	Polr1d	100	95.489	Mesocricetus_auratus
ENSSBOG00000028482	-	99	80.303	ENSMICG00000007349	-	100	80.303	Microcebus_murinus
ENSSBOG00000028482	-	100	96.992	ENSMICG00000016883	-	100	96.992	Microcebus_murinus
ENSSBOG00000028482	-	99	94.697	ENSMOCG00000021288	Polr1d	99	94.697	Microtus_ochrogaster
ENSSBOG00000028482	-	80	68.224	ENSMMOG00000009605	polr1d	94	68.224	Mola_mola
ENSSBOG00000028482	-	80	85.849	ENSMODG00000023881	POLR1D	93	85.849	Monodelphis_domestica
ENSSBOG00000028482	-	80	67.290	ENSMALG00000010652	polr1d	94	67.290	Monopterus_albus
ENSSBOG00000028482	-	100	90.226	MGP_CAROLIEiJ_G0028034	Polr1d	100	90.226	Mus_caroli
ENSSBOG00000028482	-	100	90.226	ENSMUSG00000029642	Polr1d	100	90.226	Mus_musculus
ENSSBOG00000028482	-	100	89.474	MGP_PahariEiJ_G0024600	Polr1d	100	89.474	Mus_pahari
ENSSBOG00000028482	-	100	90.977	MGP_SPRETEiJ_G0029032	Polr1d	100	90.977	Mus_spretus
ENSSBOG00000028482	-	100	96.992	ENSMLUG00000027169	-	100	96.992	Myotis_lucifugus
ENSSBOG00000028482	-	99	87.121	ENSMLUG00000004118	-	99	87.121	Myotis_lucifugus
ENSSBOG00000028482	-	87	98.276	ENSNGAG00000006014	Polr1d	100	98.276	Nannospalax_galili
ENSSBOG00000028482	-	80	71.028	ENSNBRG00000020327	polr1d	94	71.028	Neolamprologus_brichardi
ENSSBOG00000028482	-	100	98.496	ENSNLEG00000000358	POLR1D	100	98.496	Nomascus_leucogenys
ENSSBOG00000028482	-	100	95.489	ENSODEG00000005294	-	100	95.489	Octodon_degus
ENSSBOG00000028482	-	100	81.203	ENSODEG00000014801	-	100	81.203	Octodon_degus
ENSSBOG00000028482	-	79	81.905	ENSOANG00000008708	-	97	81.905	Ornithorhynchus_anatinus
ENSSBOG00000028482	-	100	96.992	ENSOCUG00000015706	POLR1D	82	96.992	Oryctolagus_cuniculus
ENSSBOG00000028482	-	80	68.224	ENSORLG00000010257	polr1d	94	68.224	Oryzias_latipes
ENSSBOG00000028482	-	83	66.667	ENSORLG00020000533	polr1d	75	66.667	Oryzias_latipes_hni
ENSSBOG00000028482	-	85	67.257	ENSORLG00015013267	polr1d	75	67.257	Oryzias_latipes_hsok
ENSSBOG00000028482	-	86	66.957	ENSOMEG00000014912	polr1d	77	66.957	Oryzias_melastigma
ENSSBOG00000028482	-	100	96.992	ENSOGAG00000014601	POLR1D	100	96.992	Otolemur_garnettii
ENSSBOG00000028482	-	94	96.000	ENSOARG00000017005	POLR1D	96	96.000	Ovis_aries
ENSSBOG00000028482	-	100	96.992	ENSPPAG00000028138	POLR1D	100	96.992	Pan_paniscus
ENSSBOG00000028482	-	99	97.727	ENSPPRG00000003381	POLR1D	99	97.727	Panthera_pardus
ENSSBOG00000028482	-	93	97.581	ENSPTIG00000018137	POLR1D	93	97.581	Panthera_tigris_altaica
ENSSBOG00000028482	-	100	98.496	ENSPTRG00000005734	POLR1D	100	98.496	Pan_troglodytes
ENSSBOG00000028482	-	100	86.466	ENSPANG00000035051	-	100	86.466	Papio_anubis
ENSSBOG00000028482	-	100	97.744	ENSPANG00000020259	-	100	97.744	Papio_anubis
ENSSBOG00000028482	-	86	61.739	ENSPKIG00000021891	polr1d	94	50.000	Paramormyrops_kingsleyae
ENSSBOG00000028482	-	87	72.650	ENSPSIG00000011822	POLR1D	91	72.650	Pelodiscus_sinensis
ENSSBOG00000028482	-	84	66.071	ENSPMGG00000010359	polr1d	97	66.071	Periophthalmus_magnuspinnatus
ENSSBOG00000028482	-	93	56.800	ENSPMGG00000012998	POLR1D	93	56.800	Periophthalmus_magnuspinnatus
ENSSBOG00000028482	-	100	91.729	ENSPEMG00000006336	-	100	91.729	Peromyscus_maniculatus_bairdii
ENSSBOG00000028482	-	82	59.633	ENSPMAG00000004228	polr1d	92	59.633	Petromyzon_marinus
ENSSBOG00000028482	-	80	85.849	ENSPCIG00000001673	POLR1D	93	85.849	Phascolarctos_cinereus
ENSSBOG00000028482	-	79	72.381	ENSPFOG00000023343	polr1d	92	73.750	Poecilia_formosa
ENSSBOG00000028482	-	79	72.381	ENSPLAG00000009675	polr1d	92	72.381	Poecilia_latipinna
ENSSBOG00000028482	-	79	72.381	ENSPMEG00000004628	polr1d	92	72.381	Poecilia_mexicana
ENSSBOG00000028482	-	79	72.381	ENSPREG00000022032	polr1d	92	72.381	Poecilia_reticulata
ENSSBOG00000028482	-	100	96.992	ENSPCOG00000028175	POLR1D	100	96.992	Propithecus_coquereli
ENSSBOG00000028482	-	80	71.028	ENSPNYG00000000107	polr1d	94	71.028	Pundamilia_nyererei
ENSSBOG00000028482	-	76	68.317	ENSPNAG00000001512	polr1d	87	67.308	Pygocentrus_nattereri
ENSSBOG00000028482	-	100	97.744	ENSRBIG00000036378	-	100	97.744	Rhinopithecus_bieti
ENSSBOG00000028482	-	100	93.985	ENSRBIG00000000336	-	100	93.985	Rhinopithecus_bieti
ENSSBOG00000028482	-	100	93.985	ENSRROG00000026751	-	100	93.985	Rhinopithecus_roxellana
ENSSBOG00000028482	-	100	97.744	ENSRROG00000042232	-	100	97.744	Rhinopithecus_roxellana
ENSSBOG00000028482	-	90	45.000	YNL113W	RPC19	85	45.000	Saccharomyces_cerevisiae
ENSSBOG00000028482	-	86	78.947	ENSSHAG00000001190	POLR1D	88	78.947	Sarcophilus_harrisii
ENSSBOG00000028482	-	83	72.072	ENSSFOG00015011375	polr1d	97	72.072	Scleropages_formosus
ENSSBOG00000028482	-	80	68.224	ENSSMAG00000011861	polr1d	94	68.224	Scophthalmus_maximus
ENSSBOG00000028482	-	80	67.290	ENSSDUG00000011930	polr1d	94	67.290	Seriola_dumerili
ENSSBOG00000028482	-	86	63.478	ENSSLDG00000023871	polr1d	97	63.478	Seriola_lalandi_dorsalis
ENSSBOG00000028482	-	100	97.744	ENSSARG00000007840	POLR1D	100	97.744	Sorex_araneus
ENSSBOG00000028482	-	79	75.238	ENSSPUG00000005786	POLR1D	95	72.072	Sphenodon_punctatus
ENSSBOG00000028482	-	79	72.381	ENSSPAG00000011764	polr1d	92	72.381	Stegastes_partitus
ENSSBOG00000028482	-	100	95.489	ENSSSCG00000009310	POLR1D	100	95.489	Sus_scrofa
ENSSBOG00000028482	-	72	77.083	ENSTGUG00000005450	POLR1D	100	77.083	Taeniopygia_guttata
ENSSBOG00000028482	-	78	65.385	ENSTRUG00000019741	polr1d	91	65.385	Takifugu_rubripes
ENSSBOG00000028482	-	93	97.581	ENSTBEG00000007006	POLR1D	100	97.581	Tupaia_belangeri
ENSSBOG00000028482	-	100	99.248	ENSUAMG00000011413	POLR1D	100	99.248	Ursus_americanus
ENSSBOG00000028482	-	93	99.194	ENSUMAG00000016968	POLR1D	97	99.194	Ursus_maritimus
ENSSBOG00000028482	-	100	99.248	ENSVVUG00000009216	POLR1D	100	99.248	Vulpes_vulpes
ENSSBOG00000028482	-	74	75.510	ENSXCOG00000011731	polr1d	75	75.510	Xiphophorus_couchianus
ENSSBOG00000028482	-	74	75.510	ENSXMAG00000017538	polr1d	75	75.510	Xiphophorus_maculatus