EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSBOG00000029362 (Gene tree)
Gene ID: 101036940
Gene Symbol: USB1
Alias: C16orf57|FLJ13154|HVSL1|Mpn1
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Saimiri_boliviensis_boliviensis
Status: putative
Strand: Plus strand
Length: 19313 bases
Position: chrJH378288.1:2123206-2142518
Accession: 25792
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSBOP00000025806	HVSL	PF09749.9	3.9e-63	1	1
ENSSBOP00000025819	HVSL	PF09749.9	2.2e-51	1	2
ENSSBOP00000025819	HVSL	PF09749.9	2.2e-51	2	2
ENSSBOP00000025828	HVSL	PF09749.9	5.6e-29	1	1
ENSSBOP00000025831	HVSL	PF09749.9	7.1e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSBOT00000042675	USB1-201	3959	XM_003943499	ENSSBOP00000025806	265 (aa)	XP_003943548	A0A2K6U1Q8
ENSSBOT00000042697	USB1-203	477	-	ENSSBOP00000025828	158 (aa)	-	A0A2K6U1N2
ENSSBOT00000042688	USB1-202	744	-	ENSSBOP00000025819	247 (aa)	-	A0A2K6U1R3
ENSSBOT00000042700	USB1-204	528	-	ENSSBOP00000025831	175 (aa)	-	A0A2K6U1S9

Gene Model

Click here to download ENSSBOG00000029362's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSBOG00000029362's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSBOG00000029362	USB1	100	94.340	ENSG00000103005	USB1	100	95.794	Homo_sapiens
ENSSBOG00000029362	USB1	98	47.126	ENSAPOG00000011942	usb1	81	52.423	Acanthochromis_polyacanthus
ENSSBOG00000029362	USB1	100	82.528	ENSAMEG00000017205	USB1	100	82.156	Ailuropoda_melanoleuca
ENSSBOG00000029362	USB1	85	54.018	ENSACIG00000012234	usb1	82	54.018	Amphilophus_citrinellus
ENSSBOG00000029362	USB1	95	50.598	ENSAOCG00000014831	usb1	80	54.185	Amphiprion_ocellaris
ENSSBOG00000029362	USB1	95	50.996	ENSAPEG00000000296	usb1	80	54.626	Amphiprion_percula
ENSSBOG00000029362	USB1	95	49.801	ENSATEG00000009348	usb1	82	52.381	Anabas_testudineus
ENSSBOG00000029362	USB1	85	70.925	ENSAPLG00000002756	USB1	100	70.796	Anas_platyrhynchos
ENSSBOG00000029362	USB1	86	64.192	ENSACAG00000015481	USB1	100	64.192	Anolis_carolinensis
ENSSBOG00000029362	USB1	100	96.226	ENSANAG00000035640	USB1	100	96.226	Aotus_nancymaae
ENSSBOG00000029362	USB1	94	49.799	ENSACLG00000020586	usb1	80	53.097	Astatotilapia_calliptera
ENSSBOG00000029362	USB1	84	52.018	ENSAMXG00000040146	usb1	74	52.018	Astyanax_mexicanus
ENSSBOG00000029362	USB1	100	84.906	ENSBTAG00000015758	USB1	100	84.906	Bos_taurus
ENSSBOG00000029362	USB1	100	96.981	ENSCJAG00000011733	USB1	100	96.981	Callithrix_jacchus
ENSSBOG00000029362	USB1	99	80.882	ENSCAFG00000008556	USB1	73	79.412	Canis_familiaris
ENSSBOG00000029362	USB1	99	82.642	ENSCAFG00020009263	USB1	99	79.121	Canis_lupus_dingo
ENSSBOG00000029362	USB1	100	83.774	ENSCHIG00000024290	USB1	100	83.774	Capra_hircus
ENSSBOG00000029362	USB1	100	89.057	ENSTSYG00000006997	USB1	100	89.057	Carlito_syrichta
ENSSBOG00000029362	USB1	74	86.325	ENSCAPG00000009057	USB1	100	72.430	Cavia_aperea
ENSSBOG00000029362	USB1	100	81.343	ENSCPOG00000014325	USB1	100	81.343	Cavia_porcellus
ENSSBOG00000029362	USB1	100	97.358	ENSCCAG00000022132	USB1	100	97.358	Cebus_capucinus
ENSSBOG00000029362	USB1	100	94.340	ENSCATG00000032174	USB1	100	94.340	Cercocebus_atys
ENSSBOG00000029362	USB1	66	86.932	ENSCLAG00000007363	USB1	100	86.932	Chinchilla_lanigera
ENSSBOG00000029362	USB1	100	95.094	ENSCSAG00000004783	USB1	100	95.094	Chlorocebus_sabaeus
ENSSBOG00000029362	USB1	91	66.667	ENSCPBG00000026943	USB1	85	66.667	Chrysemys_picta_bellii
ENSSBOG00000029362	USB1	83	30.702	ENSCSAVG00000000894	-	82	30.702	Ciona_savignyi
ENSSBOG00000029362	USB1	100	94.340	ENSCANG00000037135	USB1	100	94.340	Colobus_angolensis_palliatus
ENSSBOG00000029362	USB1	100	84.328	ENSCGRG00001011243	USB1	100	83.955	Cricetulus_griseus_chok1gshd
ENSSBOG00000029362	USB1	100	84.328	ENSCGRG00000013252	USB1	100	83.955	Cricetulus_griseus_crigri
ENSSBOG00000029362	USB1	98	48.540	ENSCSEG00000013881	usb1	82	51.754	Cynoglossus_semilaevis
ENSSBOG00000029362	USB1	85	50.000	ENSCVAG00000009252	usb1	97	50.439	Cyprinodon_variegatus
ENSSBOG00000029362	USB1	85	50.893	ENSDARG00000003841	usb1	81	50.893	Danio_rerio
ENSSBOG00000029362	USB1	100	81.509	ENSDORG00000001888	Usb1	100	81.509	Dipodomys_ordii
ENSSBOG00000029362	USB1	77	40.000	FBgn0037713	CG16790	78	40.000	Drosophila_melanogaster
ENSSBOG00000029362	USB1	95	74.342	ENSETEG00000019682	USB1	100	68.914	Echinops_telfairi
ENSSBOG00000029362	USB1	84	50.901	ENSEBUG00000005889	usb1	78	50.901	Eptatretus_burgeri
ENSSBOG00000029362	USB1	100	86.038	ENSEASG00005005484	USB1	100	86.038	Equus_asinus_asinus
ENSSBOG00000029362	USB1	100	86.792	ENSECAG00000019493	USB1	91	86.792	Equus_caballus
ENSSBOG00000029362	USB1	66	78.409	ENSEEUG00000000154	USB1	66	78.409	Erinaceus_europaeus
ENSSBOG00000029362	USB1	86	49.561	ENSELUG00000010974	usb1	84	49.561	Esox_lucius
ENSSBOG00000029362	USB1	100	84.644	ENSFCAG00000002693	USB1	100	84.644	Felis_catus
ENSSBOG00000029362	USB1	85	67.257	ENSFALG00000006876	USB1	99	56.981	Ficedula_albicollis
ENSSBOG00000029362	USB1	100	83.895	ENSFDAG00000010052	USB1	100	83.895	Fukomys_damarensis
ENSSBOG00000029362	USB1	92	44.444	ENSFHEG00000012334	usb1	78	53.061	Fundulus_heteroclitus
ENSSBOG00000029362	USB1	84	51.121	ENSGMOG00000004228	usb1	99	51.121	Gadus_morhua
ENSSBOG00000029362	USB1	84	67.411	ENSGALG00000035604	USB1	89	67.257	Gallus_gallus
ENSSBOG00000029362	USB1	98	48.375	ENSGAFG00000021890	usb1	82	52.632	Gambusia_affinis
ENSSBOG00000029362	USB1	85	52.212	ENSGACG00000003257	usb1	81	52.212	Gasterosteus_aculeatus
ENSSBOG00000029362	USB1	100	63.273	ENSGAGG00000022572	USB1	100	62.637	Gopherus_agassizii
ENSSBOG00000029362	USB1	100	95.094	ENSGGOG00000017147	USB1	100	95.094	Gorilla_gorilla
ENSSBOG00000029362	USB1	94	50.996	ENSHBUG00000009823	usb1	81	53.744	Haplochromis_burtoni
ENSSBOG00000029362	USB1	100	84.270	ENSHGLG00000016078	USB1	98	84.270	Heterocephalus_glaber_female
ENSSBOG00000029362	USB1	100	84.270	ENSHGLG00100005562	USB1	98	84.270	Heterocephalus_glaber_male
ENSSBOG00000029362	USB1	82	54.839	ENSHCOG00000015633	usb1	86	54.709	Hippocampus_comes
ENSSBOG00000029362	USB1	92	51.639	ENSIPUG00000008601	usb1	84	51.639	Ictalurus_punctatus
ENSSBOG00000029362	USB1	100	83.150	ENSSTOG00000007548	USB1	100	81.685	Ictidomys_tridecemlineatus
ENSSBOG00000029362	USB1	100	85.768	ENSJJAG00000021859	Usb1	100	85.768	Jaculus_jaculus
ENSSBOG00000029362	USB1	86	53.304	ENSKMAG00000007200	usb1	80	53.304	Kryptolebias_marmoratus
ENSSBOG00000029362	USB1	75	52.764	ENSLBEG00000008452	usb1	64	53.684	Labrus_bergylta
ENSSBOG00000029362	USB1	85	56.579	ENSLACG00000000105	USB1	72	60.287	Latimeria_chalumnae
ENSSBOG00000029362	USB1	95	54.086	ENSLOCG00000000465	usb1	85	55.144	Lepisosteus_oculatus
ENSSBOG00000029362	USB1	100	65.556	ENSLAFG00000002267	USB1	100	65.926	Loxodonta_africana
ENSSBOG00000029362	USB1	100	94.717	ENSMFAG00000003926	USB1	100	94.717	Macaca_fascicularis
ENSSBOG00000029362	USB1	100	94.717	ENSMMUG00000022669	USB1	100	94.717	Macaca_mulatta
ENSSBOG00000029362	USB1	100	94.340	ENSMNEG00000042487	USB1	100	94.340	Macaca_nemestrina
ENSSBOG00000029362	USB1	100	94.717	ENSMLEG00000028756	USB1	100	94.717	Mandrillus_leucophaeus
ENSSBOG00000029362	USB1	98	48.736	ENSMAMG00000015092	usb1	81	53.540	Mastacembelus_armatus
ENSSBOG00000029362	USB1	94	49.799	ENSMZEG00005010008	usb1	80	53.097	Maylandia_zebra
ENSSBOG00000029362	USB1	100	84.270	ENSMAUG00000007832	Usb1	100	84.270	Mesocricetus_auratus
ENSSBOG00000029362	USB1	100	89.434	ENSMICG00000004900	USB1	100	89.434	Microcebus_murinus
ENSSBOG00000029362	USB1	100	83.521	ENSMOCG00000022647	Usb1	100	83.521	Microtus_ochrogaster
ENSSBOG00000029362	USB1	86	52.193	ENSMMOG00000000490	usb1	88	52.193	Mola_mola
ENSSBOG00000029362	USB1	100	68.657	ENSMODG00000014067	USB1	100	67.164	Monodelphis_domestica
ENSSBOG00000029362	USB1	95	49.402	ENSMALG00000005930	usb1	80	52.863	Monopterus_albus
ENSSBOG00000029362	USB1	100	81.648	MGP_CAROLIEiJ_G0031421	Usb1	100	85.841	Mus_caroli
ENSSBOG00000029362	USB1	100	81.648	ENSMUSG00000031792	Usb1	100	86.726	Mus_musculus
ENSSBOG00000029362	USB1	100	82.022	MGP_PahariEiJ_G0023019	Usb1	100	87.179	Mus_pahari
ENSSBOG00000029362	USB1	100	80.899	MGP_SPRETEiJ_G0032540	Usb1	100	80.899	Mus_spretus
ENSSBOG00000029362	USB1	100	80.669	ENSMPUG00000004684	USB1	96	79.926	Mustela_putorius_furo
ENSSBOG00000029362	USB1	87	87.879	ENSMLUG00000007400	USB1	100	87.879	Myotis_lucifugus
ENSSBOG00000029362	USB1	100	84.387	ENSNGAG00000009703	Usb1	100	84.015	Nannospalax_galili
ENSSBOG00000029362	USB1	87	51.869	ENSNBRG00000008747	usb1	99	53.960	Neolamprologus_brichardi
ENSSBOG00000029362	USB1	100	91.139	ENSNLEG00000003340	USB1	100	95.200	Nomascus_leucogenys
ENSSBOG00000029362	USB1	94	57.692	ENSMEUG00000003328	-	100	59.868	Notamacropus_eugenii
ENSSBOG00000029362	USB1	74	80.342	ENSOPRG00000011803	USB1	72	84.848	Ochotona_princeps
ENSSBOG00000029362	USB1	100	80.524	ENSODEG00000016214	USB1	100	80.524	Octodon_degus
ENSSBOG00000029362	USB1	98	47.518	ENSONIG00000011063	usb1	81	53.304	Oreochromis_niloticus
ENSSBOG00000029362	USB1	85	73.333	ENSOANG00000012118	USB1	94	73.333	Ornithorhynchus_anatinus
ENSSBOG00000029362	USB1	94	47.791	ENSORLG00000012479	usb1	93	47.244	Oryzias_latipes
ENSSBOG00000029362	USB1	94	48.193	ENSORLG00020018671	usb1	99	48.148	Oryzias_latipes_hni
ENSSBOG00000029362	USB1	92	47.451	ENSORLG00015009679	usb1	94	47.638	Oryzias_latipes_hsok
ENSSBOG00000029362	USB1	85	50.442	ENSOMEG00000012930	usb1	82	50.000	Oryzias_melastigma
ENSSBOG00000029362	USB1	100	87.449	ENSOGAG00000003273	USB1	100	87.449	Otolemur_garnettii
ENSSBOG00000029362	USB1	95	82.609	ENSOARG00000001107	USB1	93	84.774	Ovis_aries
ENSSBOG00000029362	USB1	100	94.717	ENSPPAG00000042137	USB1	100	94.717	Pan_paniscus
ENSSBOG00000029362	USB1	100	84.644	ENSPPRG00000024797	USB1	100	84.644	Panthera_pardus
ENSSBOG00000029362	USB1	100	84.644	ENSPTIG00000007506	USB1	100	84.644	Panthera_tigris_altaica
ENSSBOG00000029362	USB1	100	93.927	ENSPTRG00000008172	USB1	100	96.729	Pan_troglodytes
ENSSBOG00000029362	USB1	100	94.717	ENSPANG00000025138	USB1	100	94.717	Papio_anubis
ENSSBOG00000029362	USB1	93	53.226	ENSPKIG00000015109	usb1	76	55.556	Paramormyrops_kingsleyae
ENSSBOG00000029362	USB1	85	53.982	ENSPSIG00000004305	USB1	100	53.982	Pelodiscus_sinensis
ENSSBOG00000029362	USB1	84	52.466	ENSPMGG00000017725	usb1	85	52.466	Periophthalmus_magnuspinnatus
ENSSBOG00000029362	USB1	100	83.456	ENSPEMG00000016183	Usb1	100	81.250	Peromyscus_maniculatus_bairdii
ENSSBOG00000029362	USB1	85	50.442	ENSPMAG00000000462	usb1	95	50.442	Petromyzon_marinus
ENSSBOG00000029362	USB1	98	47.292	ENSPFOG00000011130	usb1	82	52.193	Poecilia_formosa
ENSSBOG00000029362	USB1	98	47.292	ENSPLAG00000009820	usb1	82	52.193	Poecilia_latipinna
ENSSBOG00000029362	USB1	98	47.653	ENSPMEG00000006402	usb1	82	52.193	Poecilia_mexicana
ENSSBOG00000029362	USB1	92	43.210	ENSPREG00000001047	usb1	79	53.571	Poecilia_reticulata
ENSSBOG00000029362	USB1	95	91.270	ENSPPYG00000007401	USB1	100	91.270	Pongo_abelii
ENSSBOG00000029362	USB1	100	89.434	ENSPCOG00000022612	USB1	100	89.434	Propithecus_coquereli
ENSSBOG00000029362	USB1	100	81.887	ENSPVAG00000004613	USB1	100	81.887	Pteropus_vampyrus
ENSSBOG00000029362	USB1	94	51.502	ENSPNYG00000022262	usb1	81	53.744	Pundamilia_nyererei
ENSSBOG00000029362	USB1	85	52.679	ENSPNAG00000011736	usb1	76	52.679	Pygocentrus_nattereri
ENSSBOG00000029362	USB1	100	84.270	ENSRNOG00000013216	Usb1	100	84.270	Rattus_norvegicus
ENSSBOG00000029362	USB1	100	94.737	ENSRBIG00000044466	USB1	100	97.664	Rhinopithecus_bieti
ENSSBOG00000029362	USB1	100	95.094	ENSRROG00000029211	USB1	100	95.094	Rhinopithecus_roxellana
ENSSBOG00000029362	USB1	83	73.059	ENSSHAG00000006993	USB1	94	70.042	Sarcophilus_harrisii
ENSSBOG00000029362	USB1	89	56.303	ENSSFOG00015023663	usb1	75	56.303	Scleropages_formosus
ENSSBOG00000029362	USB1	98	48.551	ENSSMAG00000015834	usb1	81	51.667	Scophthalmus_maximus
ENSSBOG00000029362	USB1	85	55.357	ENSSDUG00000002949	usb1	83	55.357	Seriola_dumerili
ENSSBOG00000029362	USB1	85	54.867	ENSSLDG00000014174	usb1	80	54.867	Seriola_lalandi_dorsalis
ENSSBOG00000029362	USB1	81	69.159	ENSSPUG00000006741	USB1	100	69.159	Sphenodon_punctatus
ENSSBOG00000029362	USB1	86	52.423	ENSSPAG00000007484	usb1	80	52.423	Stegastes_partitus
ENSSBOG00000029362	USB1	100	84.758	ENSSSCG00000002807	USB1	100	83.271	Sus_scrofa
ENSSBOG00000029362	USB1	80	70.283	ENSTGUG00000004792	USB1	87	68.919	Taeniopygia_guttata
ENSSBOG00000029362	USB1	98	48.134	ENSTRUG00000021069	usb1	86	50.649	Takifugu_rubripes
ENSSBOG00000029362	USB1	98	46.415	ENSTNIG00000000626	usb1	83	48.661	Tetraodon_nigroviridis
ENSSBOG00000029362	USB1	88	62.931	ENSTBEG00000001507	USB1	100	62.931	Tupaia_belangeri
ENSSBOG00000029362	USB1	100	82.156	ENSUAMG00000016823	USB1	100	82.156	Ursus_americanus
ENSSBOG00000029362	USB1	81	87.383	ENSUMAG00000021369	USB1	100	87.383	Ursus_maritimus
ENSSBOG00000029362	USB1	99	50.633	ENSVPAG00000009834	-	59	87.500	Vicugna_pacos
ENSSBOG00000029362	USB1	99	81.716	ENSVVUG00000023700	USB1	93	85.892	Vulpes_vulpes
ENSSBOG00000029362	USB1	82	55.505	ENSXETG00000013795	usb1	94	54.237	Xenopus_tropicalis
ENSSBOG00000029362	USB1	94	50.000	ENSXMAG00000024687	usb1	67	52.632	Xiphophorus_maculatus