EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSBOG00000029530 (Gene tree)
Gene ID: 101051974
Gene Symbol: RIF1
Alias: FLJ10599|FLJ12870
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Saimiri_boliviensis_boliviensis
Status: putative
Strand: Minus strand
Length: 63523 bases
Position: chrJH378109.1:33798310-33861832
Accession: 23207
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSBOP00000026316	Rif1_N	PF12231.8	4.1e-55	1	2
ENSSBOP00000026316	Rif1_N	PF12231.8	4.1e-55	2	2
ENSSBOP00000026312	Rif1_N	PF12231.8	4.3e-55	1	2
ENSSBOP00000026312	Rif1_N	PF12231.8	4.3e-55	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSBOT00000043189	RIF1-202	7098	XM_010330250	ENSSBOP00000026316	2365 (aa)	XP_010328552	A0A2K6U349
ENSSBOT00000043185	RIF1-201	7176	XM_010330248	ENSSBOP00000026312	2391 (aa)	XP_010328550	A0A2K6U329

Gene Model

Click here to download ENSSBOG00000029530's gene model file

Pathways

Pathway ID	Pathway Name	Source
sbq04550	Signaling pathways regulating pluripotency of stem cells	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSBOG00000029530's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSBOG00000029530	RIF1	100	96.774	ENSG00000080345	RIF1	97	96.774	Homo_sapiens
ENSSBOG00000029530	RIF1	99	87.097	ENSAMEG00000008461	RIF1	97	87.097	Ailuropoda_melanoleuca
ENSSBOG00000029530	RIF1	56	55.172	ENSACIG00000017765	rif1	63	54.023	Amphilophus_citrinellus
ENSSBOG00000029530	RIF1	66	55.952	ENSAOCG00000017231	rif1	65	55.952	Amphiprion_ocellaris
ENSSBOG00000029530	RIF1	64	52.326	ENSATEG00000022887	rif1	65	51.163	Anabas_testudineus
ENSSBOG00000029530	RIF1	84	67.055	ENSAPLG00000007092	RIF1	89	67.055	Anas_platyrhynchos
ENSSBOG00000029530	RIF1	85	59.341	ENSACAG00000003714	RIF1	87	59.341	Anolis_carolinensis
ENSSBOG00000029530	RIF1	100	100.000	ENSANAG00000024840	RIF1	97	100.000	Aotus_nancymaae
ENSSBOG00000029530	RIF1	96	76.651	ENSBTAG00000021020	RIF1	99	76.651	Bos_taurus
ENSSBOG00000029530	RIF1	100	98.925	ENSCJAG00000003138	RIF1	97	98.925	Callithrix_jacchus
ENSSBOG00000029530	RIF1	100	73.368	ENSCAFG00000005670	RIF1	97	73.331	Canis_familiaris
ENSSBOG00000029530	RIF1	100	72.617	ENSCAFG00020016401	RIF1	100	72.581	Canis_lupus_dingo
ENSSBOG00000029530	RIF1	99	85.263	ENSCHIG00000020327	RIF1	96	85.263	Capra_hircus
ENSSBOG00000029530	RIF1	99	80.124	ENSTSYG00000008861	RIF1	100	80.124	Carlito_syrichta
ENSSBOG00000029530	RIF1	85	74.651	ENSCAPG00000008957	RIF1	99	74.651	Cavia_aperea
ENSSBOG00000029530	RIF1	99	86.022	ENSCPOG00000037898	RIF1	97	86.022	Cavia_porcellus
ENSSBOG00000029530	RIF1	100	90.660	ENSCCAG00000024760	RIF1	100	90.660	Cebus_capucinus
ENSSBOG00000029530	RIF1	100	96.774	ENSCATG00000033353	RIF1	97	96.774	Cercocebus_atys
ENSSBOG00000029530	RIF1	96	72.845	ENSCLAG00000001517	RIF1	97	72.845	Chinchilla_lanigera
ENSSBOG00000029530	RIF1	100	96.774	ENSCSAG00000016089	RIF1	97	96.774	Chlorocebus_sabaeus
ENSSBOG00000029530	RIF1	97	89.231	ENSCHOG00000007187	RIF1	94	89.231	Choloepus_hoffmanni
ENSSBOG00000029530	RIF1	90	72.781	ENSCPBG00000025885	RIF1	93	73.964	Chrysemys_picta_bellii
ENSSBOG00000029530	RIF1	99	97.849	ENSCANG00000028962	RIF1	97	97.849	Colobus_angolensis_palliatus
ENSSBOG00000029530	RIF1	99	84.946	ENSCGRG00001024589	Rif1	97	84.946	Cricetulus_griseus_chok1gshd
ENSSBOG00000029530	RIF1	98	87.931	ENSCGRG00000010713	Rif1	97	87.931	Cricetulus_griseus_crigri
ENSSBOG00000029530	RIF1	58	58.079	ENSCSEG00000003945	rif1	60	58.079	Cynoglossus_semilaevis
ENSSBOG00000029530	RIF1	63	56.627	ENSCVAG00000022479	rif1	65	56.627	Cyprinodon_variegatus
ENSSBOG00000029530	RIF1	61	53.247	ENSDARG00000062650	rif1	62	54.878	Danio_rerio
ENSSBOG00000029530	RIF1	99	89.247	ENSDNOG00000011194	RIF1	94	89.247	Dasypus_novemcinctus
ENSSBOG00000029530	RIF1	92	72.554	ENSETEG00000012421	RIF1	89	72.641	Echinops_telfairi
ENSSBOG00000029530	RIF1	100	92.473	ENSEASG00005023434	RIF1	97	92.857	Equus_asinus_asinus
ENSSBOG00000029530	RIF1	100	92.473	ENSECAG00000012679	RIF1	97	92.473	Equus_caballus
ENSSBOG00000029530	RIF1	61	53.947	ENSELUG00000006826	rif1	53	54.651	Esox_lucius
ENSSBOG00000029530	RIF1	100	74.156	ENSFCAG00000029742	RIF1	100	74.336	Felis_catus
ENSSBOG00000029530	RIF1	82	59.946	ENSFALG00000013874	RIF1	99	49.939	Ficedula_albicollis
ENSSBOG00000029530	RIF1	99	82.796	ENSFDAG00000006538	RIF1	96	82.796	Fukomys_damarensis
ENSSBOG00000029530	RIF1	61	51.574	ENSFHEG00000013721	rif1	62	51.512	Fundulus_heteroclitus
ENSSBOG00000029530	RIF1	52	52.747	ENSGMOG00000003517	rif1	77	55.172	Gadus_morhua
ENSSBOG00000029530	RIF1	82	65.294	ENSGALG00000012484	RIF1	91	65.294	Gallus_gallus
ENSSBOG00000029530	RIF1	62	57.831	ENSGAFG00000017196	rif1	68	57.143	Gambusia_affinis
ENSSBOG00000029530	RIF1	58	55.285	ENSGACG00000008579	rif1	62	54.800	Gasterosteus_aculeatus
ENSSBOG00000029530	RIF1	85	73.054	ENSGAGG00000012595	RIF1	89	74.251	Gopherus_agassizii
ENSSBOG00000029530	RIF1	89	96.774	ENSGGOG00000040178	RIF1	93	96.774	Gorilla_gorilla
ENSSBOG00000029530	RIF1	66	47.435	ENSHBUG00000007125	rif1	68	52.128	Haplochromis_burtoni
ENSSBOG00000029530	RIF1	91	73.498	ENSHGLG00100009807	RIF1	93	73.498	Heterocephalus_glaber_male
ENSSBOG00000029530	RIF1	62	49.121	ENSHCOG00000015943	rif1	57	49.121	Hippocampus_comes
ENSSBOG00000029530	RIF1	61	56.410	ENSIPUG00000021703	rif1	60	56.977	Ictalurus_punctatus
ENSSBOG00000029530	RIF1	100	92.473	ENSSTOG00000020712	RIF1	97	92.473	Ictidomys_tridecemlineatus
ENSSBOG00000029530	RIF1	99	69.201	ENSJJAG00000023000	Rif1	97	69.418	Jaculus_jaculus
ENSSBOG00000029530	RIF1	50	50.500	ENSKMAG00000002852	rif1	50	50.500	Kryptolebias_marmoratus
ENSSBOG00000029530	RIF1	61	54.651	ENSLBEG00000023196	rif1	55	55.952	Labrus_bergylta
ENSSBOG00000029530	RIF1	84	63.690	ENSLACG00000005425	RIF1	87	63.690	Latimeria_chalumnae
ENSSBOG00000029530	RIF1	61	53.731	ENSLOCG00000002657	rif1	66	53.731	Lepisosteus_oculatus
ENSSBOG00000029530	RIF1	99	83.871	ENSLAFG00000009796	RIF1	97	83.871	Loxodonta_africana
ENSSBOG00000029530	RIF1	100	96.774	ENSMFAG00000032233	RIF1	97	96.774	Macaca_fascicularis
ENSSBOG00000029530	RIF1	100	95.699	ENSMMUG00000008611	RIF1	97	95.699	Macaca_mulatta
ENSSBOG00000029530	RIF1	100	96.774	ENSMNEG00000031616	RIF1	97	96.774	Macaca_nemestrina
ENSSBOG00000029530	RIF1	100	96.774	ENSMLEG00000042945	RIF1	97	96.774	Mandrillus_leucophaeus
ENSSBOG00000029530	RIF1	63	53.488	ENSMAMG00000001745	rif1	61	53.488	Mastacembelus_armatus
ENSSBOG00000029530	RIF1	59	51.139	ENSMZEG00005020920	rif1	62	51.139	Maylandia_zebra
ENSSBOG00000029530	RIF1	84	64.516	ENSMGAG00000012732	RIF1	88	64.516	Meleagris_gallopavo
ENSSBOG00000029530	RIF1	94	93.264	ENSMAUG00000013158	Rif1	96	93.264	Mesocricetus_auratus
ENSSBOG00000029530	RIF1	100	95.699	ENSMICG00000046127	RIF1	97	95.699	Microcebus_murinus
ENSSBOG00000029530	RIF1	99	87.097	ENSMOCG00000009381	Rif1	98	87.097	Microtus_ochrogaster
ENSSBOG00000029530	RIF1	61	54.217	ENSMMOG00000006519	rif1	65	54.217	Mola_mola
ENSSBOG00000029530	RIF1	100	77.419	ENSMODG00000003703	RIF1	97	77.419	Monodelphis_domestica
ENSSBOG00000029530	RIF1	62	54.762	ENSMALG00000016759	rif1	69	54.762	Monopterus_albus
ENSSBOG00000029530	RIF1	99	83.871	MGP_CAROLIEiJ_G0023555	Rif1	97	83.871	Mus_caroli
ENSSBOG00000029530	RIF1	99	83.871	ENSMUSG00000036202	Rif1	97	83.871	Mus_musculus
ENSSBOG00000029530	RIF1	99	83.871	MGP_PahariEiJ_G0025006	Rif1	97	83.871	Mus_pahari
ENSSBOG00000029530	RIF1	99	83.871	MGP_SPRETEiJ_G0024476	Rif1	97	83.871	Mus_spretus
ENSSBOG00000029530	RIF1	100	86.022	ENSMPUG00000000371	RIF1	97	86.022	Mustela_putorius_furo
ENSSBOG00000029530	RIF1	93	75.403	ENSMLUG00000003376	RIF1	100	75.403	Myotis_lucifugus
ENSSBOG00000029530	RIF1	100	87.097	ENSNGAG00000009268	Rif1	97	87.097	Nannospalax_galili
ENSSBOG00000029530	RIF1	61	54.023	ENSNBRG00000014257	rif1	65	54.023	Neolamprologus_brichardi
ENSSBOG00000029530	RIF1	100	89.308	ENSNLEG00000010955	RIF1	97	89.439	Nomascus_leucogenys
ENSSBOG00000029530	RIF1	80	76.889	ENSMEUG00000007601	-	81	76.889	Notamacropus_eugenii
ENSSBOG00000029530	RIF1	96	70.532	ENSODEG00000003950	RIF1	93	70.835	Octodon_degus
ENSSBOG00000029530	RIF1	75	51.064	ENSONIG00000013657	rif1	59	51.064	Oreochromis_niloticus
ENSSBOG00000029530	RIF1	83	69.492	ENSOANG00000006078	-	82	69.492	Ornithorhynchus_anatinus
ENSSBOG00000029530	RIF1	96	75.324	ENSOCUG00000017435	RIF1	93	75.497	Oryctolagus_cuniculus
ENSSBOG00000029530	RIF1	62	51.948	ENSORLG00020001302	rif1	65	51.948	Oryzias_latipes_hni
ENSSBOG00000029530	RIF1	61	51.948	ENSORLG00015000009	rif1	63	51.948	Oryzias_latipes_hsok
ENSSBOG00000029530	RIF1	64	50.549	ENSOMEG00000021513	rif1	69	50.549	Oryzias_melastigma
ENSSBOG00000029530	RIF1	99	96.774	ENSOGAG00000006141	RIF1	97	96.774	Otolemur_garnettii
ENSSBOG00000029530	RIF1	99	72.984	ENSOARG00000008930	RIF1	99	73.196	Ovis_aries
ENSSBOG00000029530	RIF1	100	96.774	ENSPPAG00000023754	RIF1	97	96.774	Pan_paniscus
ENSSBOG00000029530	RIF1	100	74.226	ENSPPRG00000003618	RIF1	100	74.347	Panthera_pardus
ENSSBOG00000029530	RIF1	100	74.266	ENSPTIG00000020652	RIF1	100	74.387	Panthera_tigris_altaica
ENSSBOG00000029530	RIF1	100	96.774	ENSPTRG00000012534	RIF1	97	96.774	Pan_troglodytes
ENSSBOG00000029530	RIF1	100	95.699	ENSPANG00000008525	RIF1	97	95.699	Papio_anubis
ENSSBOG00000029530	RIF1	64	57.534	ENSPKIG00000004267	rif1	67	59.524	Paramormyrops_kingsleyae
ENSSBOG00000029530	RIF1	64	51.087	ENSPMGG00000016141	rif1	75	50.562	Periophthalmus_magnuspinnatus
ENSSBOG00000029530	RIF1	96	70.242	ENSPEMG00000000446	Rif1	94	70.199	Peromyscus_maniculatus_bairdii
ENSSBOG00000029530	RIF1	99	77.419	ENSPCIG00000009185	RIF1	97	77.419	Phascolarctos_cinereus
ENSSBOG00000029530	RIF1	60	51.944	ENSPFOG00000000554	-	67	51.944	Poecilia_formosa
ENSSBOG00000029530	RIF1	64	54.255	ENSPFOG00000017804	rif1	66	55.556	Poecilia_formosa
ENSSBOG00000029530	RIF1	64	55.952	ENSPLAG00000017945	rif1	68	57.500	Poecilia_latipinna
ENSSBOG00000029530	RIF1	54	50.343	ENSPMEG00000006897	-	62	50.343	Poecilia_mexicana
ENSSBOG00000029530	RIF1	63	55.000	ENSPREG00000018052	rif1	62	57.500	Poecilia_reticulata
ENSSBOG00000029530	RIF1	100	96.774	ENSPPYG00000012846	RIF1	97	96.774	Pongo_abelii
ENSSBOG00000029530	RIF1	80	85.149	ENSPCAG00000009032	RIF1	77	85.149	Procavia_capensis
ENSSBOG00000029530	RIF1	100	96.774	ENSPCOG00000027888	RIF1	97	96.774	Propithecus_coquereli
ENSSBOG00000029530	RIF1	92	91.398	ENSPVAG00000014276	RIF1	92	91.398	Pteropus_vampyrus
ENSSBOG00000029530	RIF1	62	46.939	ENSPNYG00000012940	rif1	68	47.246	Pundamilia_nyererei
ENSSBOG00000029530	RIF1	61	53.947	ENSPNAG00000016685	rif1	60	56.322	Pygocentrus_nattereri
ENSSBOG00000029530	RIF1	99	83.871	ENSRNOG00000054901	Rif1	97	83.871	Rattus_norvegicus
ENSSBOG00000029530	RIF1	100	97.849	ENSRBIG00000003704	RIF1	97	97.849	Rhinopithecus_bieti
ENSSBOG00000029530	RIF1	100	97.849	ENSRROG00000028206	RIF1	97	97.849	Rhinopithecus_roxellana
ENSSBOG00000029530	RIF1	99	76.344	ENSSHAG00000018552	RIF1	97	76.344	Sarcophilus_harrisii
ENSSBOG00000029530	RIF1	62	55.952	ENSSFOG00015021539	rif1	66	55.952	Scleropages_formosus
ENSSBOG00000029530	RIF1	61	52.326	ENSSDUG00000015632	rif1	67	52.326	Seriola_dumerili
ENSSBOG00000029530	RIF1	61	53.571	ENSSLDG00000019531	rif1	64	53.571	Seriola_lalandi_dorsalis
ENSSBOG00000029530	RIF1	62	86.207	ENSSARG00000007161	-	61	86.207	Sorex_araneus
ENSSBOG00000029530	RIF1	88	70.359	ENSSPUG00000003062	RIF1	93	70.359	Sphenodon_punctatus
ENSSBOG00000029530	RIF1	100	74.113	ENSSSCG00000016395	RIF1	100	74.194	Sus_scrofa
ENSSBOG00000029530	RIF1	62	52.326	ENSTRUG00000015808	rif1	66	52.326	Takifugu_rubripes
ENSSBOG00000029530	RIF1	67	54.878	ENSTNIG00000011538	rif1	67	54.878	Tetraodon_nigroviridis
ENSSBOG00000029530	RIF1	83	88.608	ENSTBEG00000016082	RIF1	79	88.608	Tupaia_belangeri
ENSSBOG00000029530	RIF1	100	86.022	ENSTTRG00000011190	RIF1	97	86.022	Tursiops_truncatus
ENSSBOG00000029530	RIF1	89	87.484	ENSUAMG00000026385	RIF1	99	77.966	Ursus_americanus
ENSSBOG00000029530	RIF1	100	87.097	ENSUMAG00000000337	RIF1	97	87.097	Ursus_maritimus
ENSSBOG00000029530	RIF1	100	82.796	ENSVPAG00000002162	RIF1	97	82.796	Vicugna_pacos
ENSSBOG00000029530	RIF1	100	77.419	ENSVVUG00000011293	RIF1	97	77.419	Vulpes_vulpes
ENSSBOG00000029530	RIF1	96	55.885	ENSXETG00000004530	rif1	99	43.428	Xenopus_tropicalis
ENSSBOG00000029530	RIF1	63	49.543	ENSXMAG00000000506	rif1	62	49.817	Xiphophorus_maculatus