EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSBOG00000029561 (Gene tree)
Gene ID: 101043520
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Saimiri_boliviensis_boliviensis
Status: putative
Strand: Plus strand
Length: 130611 bases
Position: chrJH378267.1:506978-637588
Accession: 30654
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSBOP00000026472	XRN_N	PF03159.18	5.5e-96	1	1
ENSSBOP00000026466	XRN_N	PF03159.18	9.3e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSBOT00000043339	XRN1-201	10159	XM_003942569	ENSSBOP00000026466	1706 (aa)	XP_003942618	A0A2K6U3J6
ENSSBOT00000043345	XRN1-202	10123	XM_003942570	ENSSBOP00000026472	1694 (aa)	XP_003942619	A0A2K6U3J3

Gene Model

Click here to download ENSSBOG00000029561's gene model file

Pathways

Pathway ID	Pathway Name	Source
sbq03008	Ribosome biogenesis in eukaryotes	KEGG
sbq03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSBOG00000029561's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSBOG00000029561	XRN1	100	96.045	ENSG00000114127	XRN1	100	99.394	Homo_sapiens
ENSSBOG00000029561	XRN1	98	73.127	ENSAPOG00000000622	xrn1	93	76.333	Acanthochromis_polyacanthus
ENSSBOG00000029561	XRN1	100	91.124	ENSAMEG00000012538	XRN1	100	91.124	Ailuropoda_melanoleuca
ENSSBOG00000029561	XRN1	95	72.439	ENSACIG00000001057	xrn1	99	72.683	Amphilophus_citrinellus
ENSSBOG00000029561	XRN1	100	61.193	ENSAOCG00000014097	xrn1	95	69.478	Amphiprion_ocellaris
ENSSBOG00000029561	XRN1	100	61.309	ENSAPEG00000006620	xrn1	100	61.108	Amphiprion_percula
ENSSBOG00000029561	XRN1	95	71.440	ENSATEG00000009752	xrn1	100	71.485	Anabas_testudineus
ENSSBOG00000029561	XRN1	99	75.842	ENSAPLG00000004905	XRN1	100	75.842	Anas_platyrhynchos
ENSSBOG00000029561	XRN1	100	72.523	ENSACAG00000004985	XRN1	100	72.523	Anolis_carolinensis
ENSSBOG00000029561	XRN1	100	98.229	ENSANAG00000029013	XRN1	100	98.229	Aotus_nancymaae
ENSSBOG00000029561	XRN1	100	60.510	ENSACLG00000004806	xrn1	99	60.294	Astatotilapia_calliptera
ENSSBOG00000029561	XRN1	99	61.118	ENSAMXG00000019370	xrn1	96	93.269	Astyanax_mexicanus
ENSSBOG00000029561	XRN1	100	91.857	ENSBTAG00000011524	XRN1	100	91.857	Bos_taurus
ENSSBOG00000029561	XRN1	71	39.117	WBGene00012730	xrn-1	83	39.012	Caenorhabditis_elegans
ENSSBOG00000029561	XRN1	100	98.288	ENSCJAG00000001872	XRN1	100	98.288	Callithrix_jacchus
ENSSBOG00000029561	XRN1	100	92.849	ENSCAFG00000007783	XRN1	100	92.849	Canis_familiaris
ENSSBOG00000029561	XRN1	100	91.681	ENSCAFG00020009120	XRN1	99	93.691	Canis_lupus_dingo
ENSSBOG00000029561	XRN1	99	89.763	ENSCHIG00000019192	XRN1	99	89.763	Capra_hircus
ENSSBOG00000029561	XRN1	100	93.392	ENSTSYG00000002705	XRN1	100	93.392	Carlito_syrichta
ENSSBOG00000029561	XRN1	100	98.760	ENSCCAG00000034800	XRN1	100	98.760	Cebus_capucinus
ENSSBOG00000029561	XRN1	100	96.871	ENSCATG00000041794	XRN1	100	96.871	Cercocebus_atys
ENSSBOG00000029561	XRN1	100	87.594	ENSCLAG00000001451	XRN1	99	96.197	Chinchilla_lanigera
ENSSBOG00000029561	XRN1	100	96.661	ENSCSAG00000011265	XRN1	100	96.661	Chlorocebus_sabaeus
ENSSBOG00000029561	XRN1	61	98.701	ENSCHOG00000013961	-	62	98.701	Choloepus_hoffmanni
ENSSBOG00000029561	XRN1	71	45.271	ENSCSAVG00000008584	-	98	44.806	Ciona_savignyi
ENSSBOG00000029561	XRN1	100	96.753	ENSCANG00000037495	XRN1	99	98.732	Colobus_angolensis_palliatus
ENSSBOG00000029561	XRN1	100	87.695	ENSCGRG00001019411	Xrn1	99	96.355	Cricetulus_griseus_chok1gshd
ENSSBOG00000029561	XRN1	100	87.695	ENSCGRG00000012464	Xrn1	99	96.355	Cricetulus_griseus_crigri
ENSSBOG00000029561	XRN1	100	55.806	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSSBOG00000029561	XRN1	67	67.835	ENSCVAG00000013089	xrn1	99	72.247	Cyprinodon_variegatus
ENSSBOG00000029561	XRN1	99	62.735	ENSDARG00000091652	xrn1	98	80.169	Danio_rerio
ENSSBOG00000029561	XRN1	100	86.632	ENSDORG00000013833	Xrn1	100	86.632	Dipodomys_ordii
ENSSBOG00000029561	XRN1	75	40.093	FBgn0020261	pcm	76	40.000	Drosophila_melanogaster
ENSSBOG00000029561	XRN1	86	100.000	ENSETEG00000003978	XRN1	88	99.194	Echinops_telfairi
ENSSBOG00000029561	XRN1	100	92.326	ENSEASG00005002687	XRN1	99	96.830	Equus_asinus_asinus
ENSSBOG00000029561	XRN1	100	92.326	ENSECAG00000008301	XRN1	100	92.326	Equus_caballus
ENSSBOG00000029561	XRN1	92	83.187	ENSEEUG00000011323	XRN1	92	83.187	Erinaceus_europaeus
ENSSBOG00000029561	XRN1	100	61.981	ENSELUG00000000169	xrn1	100	61.652	Esox_lucius
ENSSBOG00000029561	XRN1	100	89.052	ENSFCAG00000027589	XRN1	99	96.044	Felis_catus
ENSSBOG00000029561	XRN1	100	74.396	ENSFALG00000007021	XRN1	100	74.116	Ficedula_albicollis
ENSSBOG00000029561	XRN1	100	88.575	ENSFDAG00000020494	XRN1	99	95.721	Fukomys_damarensis
ENSSBOG00000029561	XRN1	84	68.536	ENSGMOG00000006396	xrn1	83	68.536	Gadus_morhua
ENSSBOG00000029561	XRN1	100	74.620	ENSGALG00000002706	XRN1	100	74.620	Gallus_gallus
ENSSBOG00000029561	XRN1	100	59.932	ENSGACG00000014328	xrn1	100	60.080	Gasterosteus_aculeatus
ENSSBOG00000029561	XRN1	95	77.637	ENSGAGG00000017535	XRN1	99	77.637	Gopherus_agassizii
ENSSBOG00000029561	XRN1	100	96.340	ENSGGOG00000008047	XRN1	100	96.340	Gorilla_gorilla
ENSSBOG00000029561	XRN1	100	60.127	ENSHBUG00000005908	xrn1	98	72.895	Haplochromis_burtoni
ENSSBOG00000029561	XRN1	100	89.792	ENSHGLG00000014476	XRN1	99	96.830	Heterocephalus_glaber_female
ENSSBOG00000029561	XRN1	100	89.792	ENSHGLG00100015130	XRN1	99	96.830	Heterocephalus_glaber_male
ENSSBOG00000029561	XRN1	97	70.639	ENSHCOG00000014062	xrn1	95	70.873	Hippocampus_comes
ENSSBOG00000029561	XRN1	99	62.033	ENSIPUG00000015229	xrn1	96	63.593	Ictalurus_punctatus
ENSSBOG00000029561	XRN1	100	91.339	ENSSTOG00000013552	XRN1	99	97.623	Ictidomys_tridecemlineatus
ENSSBOG00000029561	XRN1	98	86.417	ENSJJAG00000010863	Xrn1	99	94.032	Jaculus_jaculus
ENSSBOG00000029561	XRN1	94	61.722	ENSKMAG00000021356	xrn1	94	76.160	Kryptolebias_marmoratus
ENSSBOG00000029561	XRN1	100	60.363	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSSBOG00000029561	XRN1	100	69.697	ENSLACG00000009020	XRN1	100	69.226	Latimeria_chalumnae
ENSSBOG00000029561	XRN1	100	65.690	ENSLOCG00000007944	xrn1	98	66.120	Lepisosteus_oculatus
ENSSBOG00000029561	XRN1	63	96.165	ENSLAFG00000015426	XRN1	100	96.165	Loxodonta_africana
ENSSBOG00000029561	XRN1	100	96.871	ENSMFAG00000032599	XRN1	100	96.871	Macaca_fascicularis
ENSSBOG00000029561	XRN1	100	96.930	ENSMMUG00000014038	XRN1	100	96.930	Macaca_mulatta
ENSSBOG00000029561	XRN1	100	96.753	ENSMNEG00000034217	XRN1	100	96.753	Macaca_nemestrina
ENSSBOG00000029561	XRN1	94	70.922	ENSMAMG00000013219	xrn1	94	75.460	Mastacembelus_armatus
ENSSBOG00000029561	XRN1	100	60.215	ENSMZEG00005015099	xrn1	99	60.181	Maylandia_zebra
ENSSBOG00000029561	XRN1	99	74.593	ENSMGAG00000006333	XRN1	100	74.593	Meleagris_gallopavo
ENSSBOG00000029561	XRN1	100	93.801	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSSBOG00000029561	XRN1	58	95.246	ENSMOCG00000008665	Xrn1	99	95.246	Microtus_ochrogaster
ENSSBOG00000029561	XRN1	100	81.845	ENSMODG00000021236	XRN1	100	81.786	Monodelphis_domestica
ENSSBOG00000029561	XRN1	100	57.788	ENSMALG00000004098	xrn1	100	57.077	Monopterus_albus
ENSSBOG00000029561	XRN1	100	79.400	MGP_CAROLIEiJ_G0032535	Xrn1	100	100.000	Mus_caroli
ENSSBOG00000029561	XRN1	100	86.424	ENSMUSG00000032410	Xrn1	100	100.000	Mus_musculus
ENSSBOG00000029561	XRN1	100	86.424	MGP_PahariEiJ_G0015404	Xrn1	100	100.000	Mus_pahari
ENSSBOG00000029561	XRN1	100	86.424	MGP_SPRETEiJ_G0033678	Xrn1	100	100.000	Mus_spretus
ENSSBOG00000029561	XRN1	100	93.263	ENSMPUG00000012040	XRN1	100	93.263	Mustela_putorius_furo
ENSSBOG00000029561	XRN1	100	89.088	ENSMLUG00000016885	XRN1	100	89.088	Myotis_lucifugus
ENSSBOG00000029561	XRN1	58	91.601	ENSNGAG00000023964	Xrn1	99	91.601	Nannospalax_galili
ENSSBOG00000029561	XRN1	100	96.635	ENSNLEG00000004726	XRN1	100	96.635	Nomascus_leucogenys
ENSSBOG00000029561	XRN1	80	98.969	ENSMEUG00000014473	-	80	99.029	Notamacropus_eugenii
ENSSBOG00000029561	XRN1	79	84.480	ENSOPRG00000007337	-	78	84.480	Ochotona_princeps
ENSSBOG00000029561	XRN1	100	60.889	ENSONIG00000016673	xrn1	99	64.516	Oreochromis_niloticus
ENSSBOG00000029561	XRN1	92	77.574	ENSOANG00000006735	XRN1	100	77.448	Ornithorhynchus_anatinus
ENSSBOG00000029561	XRN1	100	89.628	ENSOCUG00000001861	XRN1	100	89.628	Oryctolagus_cuniculus
ENSSBOG00000029561	XRN1	100	61.743	ENSORLG00000013005	xrn1	100	61.207	Oryzias_latipes
ENSSBOG00000029561	XRN1	100	61.889	ENSORLG00020005559	xrn1	100	62.010	Oryzias_latipes_hni
ENSSBOG00000029561	XRN1	100	61.845	ENSORLG00015022523	xrn1	100	61.696	Oryzias_latipes_hsok
ENSSBOG00000029561	XRN1	92	72.771	ENSOMEG00000015397	xrn1	99	73.105	Oryzias_melastigma
ENSSBOG00000029561	XRN1	100	91.095	ENSOGAG00000000170	XRN1	100	91.213	Otolemur_garnettii
ENSSBOG00000029561	XRN1	99	92.141	ENSOARG00000006343	XRN1	99	92.141	Ovis_aries
ENSSBOG00000029561	XRN1	100	96.281	ENSPPAG00000010180	XRN1	100	96.281	Pan_paniscus
ENSSBOG00000029561	XRN1	100	93.215	ENSPPRG00000007125	XRN1	100	93.215	Panthera_pardus
ENSSBOG00000029561	XRN1	100	93.274	ENSPTIG00000021081	XRN1	100	93.274	Panthera_tigris_altaica
ENSSBOG00000029561	XRN1	100	96.163	ENSPTRG00000015482	XRN1	100	96.163	Pan_troglodytes
ENSSBOG00000029561	XRN1	100	96.812	ENSPANG00000010638	XRN1	100	96.812	Papio_anubis
ENSSBOG00000029561	XRN1	100	76.299	ENSPSIG00000018050	XRN1	100	76.870	Pelodiscus_sinensis
ENSSBOG00000029561	XRN1	57	77.551	ENSPMGG00000002648	xrn1	98	78.650	Periophthalmus_magnuspinnatus
ENSSBOG00000029561	XRN1	58	96.038	ENSPEMG00000020610	Xrn1	99	96.038	Peromyscus_maniculatus_bairdii
ENSSBOG00000029561	XRN1	65	50.802	ENSPMAG00000002975	xrn1	91	78.736	Petromyzon_marinus
ENSSBOG00000029561	XRN1	100	81.469	ENSPCIG00000028735	XRN1	99	89.938	Phascolarctos_cinereus
ENSSBOG00000029561	XRN1	91	64.522	ENSPFOG00000013932	xrn1	99	64.815	Poecilia_formosa
ENSSBOG00000029561	XRN1	91	63.590	ENSPLAG00000021653	xrn1	99	64.404	Poecilia_latipinna
ENSSBOG00000029561	XRN1	89	64.383	ENSPMEG00000003076	xrn1	95	64.725	Poecilia_mexicana
ENSSBOG00000029561	XRN1	100	60.842	ENSPREG00000021147	xrn1	100	61.121	Poecilia_reticulata
ENSSBOG00000029561	XRN1	100	96.307	ENSPPYG00000014172	XRN1	100	96.307	Pongo_abelii
ENSSBOG00000029561	XRN1	90	82.048	ENSPCAG00000005638	XRN1	99	82.078	Procavia_capensis
ENSSBOG00000029561	XRN1	100	94.435	ENSPCOG00000013089	XRN1	99	96.996	Propithecus_coquereli
ENSSBOG00000029561	XRN1	96	92.114	ENSPVAG00000016265	XRN1	96	92.114	Pteropus_vampyrus
ENSSBOG00000029561	XRN1	100	60.992	ENSPNYG00000010570	xrn1	99	60.867	Pundamilia_nyererei
ENSSBOG00000029561	XRN1	99	60.519	ENSPNAG00000023531	xrn1	97	61.442	Pygocentrus_nattereri
ENSSBOG00000029561	XRN1	100	86.944	ENSRNOG00000042951	Xrn1	100	86.944	Rattus_norvegicus
ENSSBOG00000029561	XRN1	100	96.016	ENSRBIG00000041227	XRN1	100	96.016	Rhinopithecus_bieti
ENSSBOG00000029561	XRN1	67	54.496	YGL173C	XRN1	81	34.591	Saccharomyces_cerevisiae
ENSSBOG00000029561	XRN1	99	81.350	ENSSHAG00000016207	XRN1	100	81.291	Sarcophilus_harrisii
ENSSBOG00000029561	XRN1	100	60.885	ENSSFOG00015024211	xrn1	97	63.019	Scleropages_formosus
ENSSBOG00000029561	XRN1	94	72.536	ENSSMAG00000016534	xrn1	95	72.536	Scophthalmus_maximus
ENSSBOG00000029561	XRN1	90	71.867	ENSSDUG00000010306	xrn1	97	72.182	Seriola_dumerili
ENSSBOG00000029561	XRN1	95	71.361	ENSSLDG00000021543	xrn1	100	71.667	Seriola_lalandi_dorsalis
ENSSBOG00000029561	XRN1	68	85.124	ENSSARG00000007741	-	83	85.124	Sorex_araneus
ENSSBOG00000029561	XRN1	100	76.494	ENSTGUG00000008498	XRN1	100	76.262	Taeniopygia_guttata
ENSSBOG00000029561	XRN1	100	59.033	ENSTRUG00000004895	xrn1	96	75.574	Takifugu_rubripes
ENSSBOG00000029561	XRN1	96	68.551	ENSTNIG00000017615	xrn1	96	60.584	Tetraodon_nigroviridis
ENSSBOG00000029561	XRN1	84	97.574	ENSTBEG00000003256	XRN1	89	87.719	Tupaia_belangeri
ENSSBOG00000029561	XRN1	100	88.394	ENSTTRG00000012914	XRN1	100	88.394	Tursiops_truncatus
ENSSBOG00000029561	XRN1	100	92.096	ENSUAMG00000001608	XRN1	99	93.219	Ursus_americanus
ENSSBOG00000029561	XRN1	100	93.970	ENSUMAG00000013625	XRN1	100	93.970	Ursus_maritimus
ENSSBOG00000029561	XRN1	100	90.211	ENSVPAG00000004690	XRN1	100	90.211	Vicugna_pacos
ENSSBOG00000029561	XRN1	100	93.673	ENSVVUG00000024461	XRN1	99	97.147	Vulpes_vulpes
ENSSBOG00000029561	XRN1	100	69.600	ENSXETG00000000619	xrn1	99	88.802	Xenopus_tropicalis
ENSSBOG00000029561	XRN1	100	60.815	ENSXCOG00000007917	xrn1	100	60.727	Xiphophorus_couchianus
ENSSBOG00000029561	XRN1	92	72.209	ENSXMAG00000018320	xrn1	98	72.290	Xiphophorus_maculatus