EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSBOG00000029989 (Gene tree)
Gene ID
101045680
Gene Symbol
UPF3A
Alias
HUPF3A|RENT3A|UPF3
Full Name
UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type
protein_coding
Species
Saimiri_boliviensis_boliviensis
Status
putative
Strand
Plus strand
Length
18990 bases
Position
chrJH378133.1:23000824-23019813
Accession
20332
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSBOP00000027125Smg4_UPF3PF03467.151.8e-3611
ENSSBOP00000027127Smg4_UPF3PF03467.151.7e-1312
ENSSBOP00000027127Smg4_UPF3PF03467.151.7e-1322
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSBOT00000044000UPF3A-2011323XM_010338896ENSSBOP00000027125440 (aa)XP_010337198A0A2K6U5H8
ENSSBOT00000044003UPF3A-2021224-ENSSBOP00000027127407 (aa)-A0A2K6U5D9
Gene Model
Click here to download ENSSBOG00000029989's gene model file
Pathways
Pathway IDPathway NameSource
sbq03013RNA transportKEGG
sbq03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSSBOG00000029989's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSBOG00000029989UPF3A8042.582ENSSBOG00000019740UPF3B5867.769
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSBOG00000029989UPF3A10084.034ENSG00000169062UPF3A10084.034Homo_sapiens
ENSSBOG00000029989UPF3A9250.226ENSAPOG00000013484upf3a9150.113Acanthochromis_polyacanthus
ENSSBOG00000029989UPF3A8042.308ENSAMEG00000000163UPF3B7547.684Ailuropoda_melanoleuca
ENSSBOG00000029989UPF3A9366.593ENSAMEG00000004259UPF3A9966.593Ailuropoda_melanoleuca
ENSSBOG00000029989UPF3A9547.844ENSACIG00000020468upf3a7653.728Amphilophus_citrinellus
ENSSBOG00000029989UPF3A9549.891ENSAOCG00000020784upf3a9050.113Amphiprion_ocellaris
ENSSBOG00000029989UPF3A9549.891ENSAPEG00000003519upf3a9050.113Amphiprion_percula
ENSSBOG00000029989UPF3A9649.676ENSATEG00000005843upf3a7557.660Anabas_testudineus
ENSSBOG00000029989UPF3A8540.360ENSACAG00000003625UPF3B7647.527Anolis_carolinensis
ENSSBOG00000029989UPF3A8266.389ENSACAG00000001540UPF3A8567.042Anolis_carolinensis
ENSSBOG00000029989UPF3A8041.667ENSANAG00000025598-7543.094Aotus_nancymaae
ENSSBOG00000029989UPF3A10085.084ENSANAG00000021713UPF3A10085.084Aotus_nancymaae
ENSSBOG00000029989UPF3A8042.582ENSANAG00000021894-5766.667Aotus_nancymaae
ENSSBOG00000029989UPF3A9547.510ENSACLG00000026274upf3a7852.764Astatotilapia_calliptera
ENSSBOG00000029989UPF3A9548.941ENSAMXG00000002608upf3a8154.593Astyanax_mexicanus
ENSSBOG00000029989UPF3A10087.185ENSCJAG00000019102UPF3A10087.185Callithrix_jacchus
ENSSBOG00000029989UPF3A8042.582ENSCJAG00000004975UPF3B5765.854Callithrix_jacchus
ENSSBOG00000029989UPF3A9566.886ENSCAFG00000006504UPF3A9866.886Canis_familiaris
ENSSBOG00000029989UPF3A8042.778ENSCAFG00000018426UPF3B7747.802Canis_familiaris
ENSSBOG00000029989UPF3A8042.697ENSCAFG00020004074UPF3B7541.620Canis_lupus_dingo
ENSSBOG00000029989UPF3A9567.105ENSCAFG00020014268UPF3A9567.105Canis_lupus_dingo
ENSSBOG00000029989UPF3A7735.777ENSCHIG00000011454-7632.258Capra_hircus
ENSSBOG00000029989UPF3A9665.944ENSCHIG00000008682UPF3A9466.247Capra_hircus
ENSSBOG00000029989UPF3A8041.223ENSCHIG00000018011-7846.053Capra_hircus
ENSSBOG00000029989UPF3A8041.223ENSCHIG00000000247-7646.053Capra_hircus
ENSSBOG00000029989UPF3A8042.857ENSTSYG00000014690UPF3B7547.826Carlito_syrichta
ENSSBOG00000029989UPF3A8367.639ENSTSYG00000001918UPF3A10067.639Carlito_syrichta
ENSSBOG00000029989UPF3A8061.026ENSCPOG00000006824UPF3A9061.026Cavia_porcellus
ENSSBOG00000029989UPF3A10088.655ENSCCAG00000018406UPF3A10088.655Cebus_capucinus
ENSSBOG00000029989UPF3A7838.286ENSCCAG00000029813-7938.857Cebus_capucinus
ENSSBOG00000029989UPF3A10082.983ENSCATG00000029733UPF3A10082.983Cercocebus_atys
ENSSBOG00000029989UPF3A10081.628ENSCSAG00000017388UPF3A10081.628Chlorocebus_sabaeus
ENSSBOG00000029989UPF3A8352.336ENSCHOG00000006918-8654.054Choloepus_hoffmanni
ENSSBOG00000029989UPF3A8437.008ENSCPBG00000020685UPF3B7740.997Chrysemys_picta_bellii
ENSSBOG00000029989UPF3A9060.369ENSCGRG00001017387Upf3a9959.908Cricetulus_griseus_chok1gshd
ENSSBOG00000029989UPF3A8960.140ENSCGRG00000001468Upf3a9959.674Cricetulus_griseus_crigri
ENSSBOG00000029989UPF3A8355.820ENSCSEG00000005106upf3a7555.435Cynoglossus_semilaevis
ENSSBOG00000029989UPF3A8455.026ENSCVAG00000022333upf3a7755.026Cyprinodon_variegatus
ENSSBOG00000029989UPF3A8453.133ENSDARG00000069297upf3a8153.018Danio_rerio
ENSSBOG00000029989UPF3A8535.955ENSDNOG00000008665UPF3B7644.211Dasypus_novemcinctus
ENSSBOG00000029989UPF3A8865.517ENSDNOG00000034391UPF3A9865.747Dasypus_novemcinctus
ENSSBOG00000029989UPF3A8042.061ENSDORG00000006077Upf3b7547.397Dipodomys_ordii
ENSSBOG00000029989UPF3A9959.119ENSETEG00000010110UPF3A9959.748Echinops_telfairi
ENSSBOG00000029989UPF3A8541.969ENSEASG00005012919UPF3B6466.667Equus_asinus_asinus
ENSSBOG00000029989UPF3A10065.361ENSEASG00005021884UPF3A10065.361Equus_asinus_asinus
ENSSBOG00000029989UPF3A10064.948ENSECAG00000017141UPF3A10064.948Equus_caballus
ENSSBOG00000029989UPF3A8541.969ENSECAG00000016947UPF3B8141.451Equus_caballus
ENSSBOG00000029989UPF3A8354.476ENSELUG00000011050upf3a8154.476Esox_lucius
ENSSBOG00000029989UPF3A9968.267ENSFCAG00000014602UPF3A9968.267Felis_catus
ENSSBOG00000029989UPF3A8539.221ENSFDAG00000018869UPF3B7943.959Fukomys_damarensis
ENSSBOG00000029989UPF3A6756.187ENSGMOG00000019615upf3a8956.187Gadus_morhua
ENSSBOG00000029989UPF3A8456.568ENSGAFG00000021170upf3a7557.382Gambusia_affinis
ENSSBOG00000029989UPF3A6756.000ENSGACG00000001972upf3a8856.333Gasterosteus_aculeatus
ENSSBOG00000029989UPF3A8337.662ENSGAGG00000001219UPF3B8146.094Gopherus_agassizii
ENSSBOG00000029989UPF3A8386.982ENSGGOG00000041219-8287.278Gorilla_gorilla
ENSSBOG00000029989UPF3A10084.034ENSGGOG00000015428UPF3A10084.034Gorilla_gorilla
ENSSBOG00000029989UPF3A8386.982ENSGGOG00000043074-7787.278Gorilla_gorilla
ENSSBOG00000029989UPF3A9549.244ENSHBUG00000011325upf3a7755.263Haplochromis_burtoni
ENSSBOG00000029989UPF3A8042.033ENSHGLG00000019582-7647.011Heterocephalus_glaber_female
ENSSBOG00000029989UPF3A8162.148ENSHGLG00000001544UPF3A9061.637Heterocephalus_glaber_female
ENSSBOG00000029989UPF3A8040.449ENSHGLG00100002042-7546.849Heterocephalus_glaber_male
ENSSBOG00000029989UPF3A8162.148ENSHGLG00100013244UPF3A9061.637Heterocephalus_glaber_male
ENSSBOG00000029989UPF3A8344.974ENSHCOG00000017004upf3b8144.974Hippocampus_comes
ENSSBOG00000029989UPF3A8353.947ENSIPUG00000023450upf3a8153.947Ictalurus_punctatus
ENSSBOG00000029989UPF3A8240.426ENSSTOG00000001101UPF3B7546.739Ictidomys_tridecemlineatus
ENSSBOG00000029989UPF3A9250.450ENSKMAG00000004381upf3a7556.825Kryptolebias_marmoratus
ENSSBOG00000029989UPF3A8039.005ENSLACG00000008691UPF3B8046.753Latimeria_chalumnae
ENSSBOG00000029989UPF3A7046.844ENSLACG00000006645UPF3A9041.194Latimeria_chalumnae
ENSSBOG00000029989UPF3A9950.418ENSLOCG00000002665upf3a9850.418Lepisosteus_oculatus
ENSSBOG00000029989UPF3A8557.250ENSLAFG00000023358UPF3A9257.250Loxodonta_africana
ENSSBOG00000029989UPF3A8239.894ENSLAFG00000001267UPF3B7844.737Loxodonta_africana
ENSSBOG00000029989UPF3A10079.325ENSMFAG00000045016UPF3A10078.692Macaca_fascicularis
ENSSBOG00000029989UPF3A10081.562ENSMMUG00000007449UPF3A10081.087Macaca_mulatta
ENSSBOG00000029989UPF3A8489.757ENSMNEG00000036402UPF3A7689.757Macaca_nemestrina
ENSSBOG00000029989UPF3A8489.757ENSMLEG00000014726UPF3A9088.757Mandrillus_leucophaeus
ENSSBOG00000029989UPF3A9249.237ENSMAMG00000018364upf3a7554.933Mastacembelus_armatus
ENSSBOG00000029989UPF3A9547.510ENSMZEG00005021571upf3a7852.764Maylandia_zebra
ENSSBOG00000029989UPF3A8564.433ENSMGAG00000014837UPF3A9664.433Meleagris_gallopavo
ENSSBOG00000029989UPF3A8048.219ENSMAUG00000008705Upf3b7549.727Mesocricetus_auratus
ENSSBOG00000029989UPF3A6864.776ENSMOCG00000000550Upf3a8866.561Microtus_ochrogaster
ENSSBOG00000029989UPF3A8038.933ENSMOCG00000017893Upf3b7645.000Microtus_ochrogaster
ENSSBOG00000029989UPF3A8352.261ENSMMOG00000019751upf3a7752.261Mola_mola
ENSSBOG00000029989UPF3A8547.462ENSMODG00000010232UPF3B8948.731Monodelphis_domestica
ENSSBOG00000029989UPF3A8566.837ENSMODG00000003159UPF3A9266.837Monodelphis_domestica
ENSSBOG00000029989UPF3A8040.822MGP_CAROLIEiJ_G0032999Upf3b7547.154Mus_caroli
ENSSBOG00000029989UPF3A8659.518MGP_CAROLIEiJ_G0030848Upf3a9959.908Mus_caroli
ENSSBOG00000029989UPF3A8660.482ENSMUSG00000038398Upf3a9960.599Mus_musculus
ENSSBOG00000029989UPF3A8659.518MGP_PahariEiJ_G0021311Upf3a9960.138Mus_pahari
ENSSBOG00000029989UPF3A8040.822MGP_PahariEiJ_G0031543Upf3b7547.154Mus_pahari
ENSSBOG00000029989UPF3A8660.000MGP_SPRETEiJ_G0031958Upf3a9960.138Mus_spretus
ENSSBOG00000029989UPF3A9568.860ENSMPUG00000009139UPF3A9468.860Mustela_putorius_furo
ENSSBOG00000029989UPF3A8041.667ENSMPUG00000001531UPF3B7747.397Mustela_putorius_furo
ENSSBOG00000029989UPF3A8472.208ENSMLUG00000015905UPF3A9171.875Myotis_lucifugus
ENSSBOG00000029989UPF3A8042.149ENSMLUG00000010821UPF3B7547.684Myotis_lucifugus
ENSSBOG00000029989UPF3A9062.212ENSNGAG00000019314Upf3a9961.751Nannospalax_galili
ENSSBOG00000029989UPF3A9549.138ENSNBRG00000000828upf3a7755.263Neolamprologus_brichardi
ENSSBOG00000029989UPF3A10083.648ENSNLEG00000007563UPF3A10083.648Nomascus_leucogenys
ENSSBOG00000029989UPF3A7069.106ENSOPRG00000008846-5670.732Ochotona_princeps
ENSSBOG00000029989UPF3A8540.838ENSODEG00000002186-7944.819Octodon_degus
ENSSBOG00000029989UPF3A9548.608ENSONIG00000006817upf3a7555.285Oreochromis_niloticus
ENSSBOG00000029989UPF3A8538.791ENSOANG00000002594-9039.695Ornithorhynchus_anatinus
ENSSBOG00000029989UPF3A7366.779ENSOANG00000006985-8565.993Ornithorhynchus_anatinus
ENSSBOG00000029989UPF3A8041.379ENSOCUG00000010213UPF3B7646.053Oryctolagus_cuniculus
ENSSBOG00000029989UPF3A8459.424ENSOCUG00000008450UPF3A7759.424Oryctolagus_cuniculus
ENSSBOG00000029989UPF3A8255.256ENSORLG00000010911upf3a7655.256Oryzias_latipes
ENSSBOG00000029989UPF3A9349.115ENSORLG00020014317upf3a7753.175Oryzias_latipes_hni
ENSSBOG00000029989UPF3A8454.133ENSOMEG00000014425upf3a7754.133Oryzias_melastigma
ENSSBOG00000029989UPF3A8042.740ENSOGAG00000033003-7747.397Otolemur_garnettii
ENSSBOG00000029989UPF3A8268.514ENSOGAG00000004788UPF3A9668.514Otolemur_garnettii
ENSSBOG00000029989UPF3A8039.945ENSOGAG00000004643-7548.229Otolemur_garnettii
ENSSBOG00000029989UPF3A9366.000ENSOARG00000009004UPF3A9566.000Ovis_aries
ENSSBOG00000029989UPF3A8040.897ENSOARG00000016051-7645.692Ovis_aries
ENSSBOG00000029989UPF3A7940.171ENSOARG00000007869-8137.892Ovis_aries
ENSSBOG00000029989UPF3A10082.353ENSPPAG00000042267UPF3A10082.353Pan_paniscus
ENSSBOG00000029989UPF3A8042.033ENSPPRG00000023536UPF3B7547.684Panthera_pardus
ENSSBOG00000029989UPF3A9967.505ENSPPRG00000025062UPF3A9967.505Panthera_pardus
ENSSBOG00000029989UPF3A8385.207ENSPTRG00000041187-8285.503Pan_troglodytes
ENSSBOG00000029989UPF3A8383.728ENSPTRG00000051640-8283.728Pan_troglodytes
ENSSBOG00000029989UPF3A10082.983ENSPTRG00000006073UPF3A10082.983Pan_troglodytes
ENSSBOG00000029989UPF3A8383.136ENSPTRG00000041835-8183.432Pan_troglodytes
ENSSBOG00000029989UPF3A10081.723ENSPANG00000004346UPF3A10081.723Papio_anubis
ENSSBOG00000029989UPF3A8543.182ENSPKIG00000019226upf3b7847.154Paramormyrops_kingsleyae
ENSSBOG00000029989UPF3A8551.244ENSPKIG00000004422upf3a8951.244Paramormyrops_kingsleyae
ENSSBOG00000029989UPF3A8567.196ENSPSIG00000007468UPF3A9267.196Pelodiscus_sinensis
ENSSBOG00000029989UPF3A9945.859ENSPMGG00000012696upf3a7653.018Periophthalmus_magnuspinnatus
ENSSBOG00000029989UPF3A8041.576ENSPEMG00000012352Upf3b7547.849Peromyscus_maniculatus_bairdii
ENSSBOG00000029989UPF3A9062.673ENSPEMG00000019968-9962.212Peromyscus_maniculatus_bairdii
ENSSBOG00000029989UPF3A7564.758ENSPCIG00000019590-10060.547Phascolarctos_cinereus
ENSSBOG00000029989UPF3A7943.296ENSPCIG00000028914UPF3B7543.296Phascolarctos_cinereus
ENSSBOG00000029989UPF3A8457.105ENSPFOG00000013222upf3a7557.939Poecilia_formosa
ENSSBOG00000029989UPF3A8455.497ENSPLAG00000011960upf3a7656.250Poecilia_latipinna
ENSSBOG00000029989UPF3A8454.082ENSPMEG00000000836upf3a7654.762Poecilia_mexicana
ENSSBOG00000029989UPF3A10083.824ENSPPYG00000005536UPF3A10083.824Pongo_abelii
ENSSBOG00000029989UPF3A6979.275ENSPCAG00000013124UPF3A7959.824Procavia_capensis
ENSSBOG00000029989UPF3A8537.753ENSPCAG00000009464UPF3B7646.053Procavia_capensis
ENSSBOG00000029989UPF3A8445.823ENSPCOG00000021960UPF3B8145.823Propithecus_coquereli
ENSSBOG00000029989UPF3A10063.180ENSPVAG00000005656UPF3A10063.180Pteropus_vampyrus
ENSSBOG00000029989UPF3A9547.510ENSPNYG00000011289upf3a7852.764Pundamilia_nyererei
ENSSBOG00000029989UPF3A8352.284ENSPNAG00000019532upf3a8153.728Pygocentrus_nattereri
ENSSBOG00000029989UPF3A8560.784ENSRNOG00000017397Upf3a9760.539Rattus_norvegicus
ENSSBOG00000029989UPF3A8488.949ENSRBIG00000034007UPF3A8388.949Rhinopithecus_bieti
ENSSBOG00000029989UPF3A8488.949ENSRROG00000012212UPF3A7788.949Rhinopithecus_roxellana
ENSSBOG00000029989UPF3A7945.330ENSSHAG00000008634UPF3B7549.185Sarcophilus_harrisii
ENSSBOG00000029989UPF3A8568.074ENSSHAG00000009895UPF3A9068.074Sarcophilus_harrisii
ENSSBOG00000029989UPF3A8553.968ENSSFOG00015021851upf3a7953.968Scleropages_formosus
ENSSBOG00000029989UPF3A9248.366ENSSDUG00000009680upf3a9148.148Seriola_dumerili
ENSSBOG00000029989UPF3A9250.113ENSSLDG00000009700upf3a9049.887Seriola_lalandi_dorsalis
ENSSBOG00000029989UPF3A7565.350ENSSARG00000007262UPF3A8061.398Sorex_araneus
ENSSBOG00000029989UPF3A7940.884ENSSPUG00000013082UPF3B7541.160Sphenodon_punctatus
ENSSBOG00000029989UPF3A10066.392ENSSSCG00000024679UPF3A9766.392Sus_scrofa
ENSSBOG00000029989UPF3A8042.975ENSSSCG00000012617UPF3B7547.956Sus_scrofa
ENSSBOG00000029989UPF3A7968.286ENSTGUG00000009493UPF3A8968.286Taeniopygia_guttata
ENSSBOG00000029989UPF3A9648.812ENSTRUG00000012730upf3a7655.833Takifugu_rubripes
ENSSBOG00000029989UPF3A7949.288ENSTNIG00000014973upf3a8649.003Tetraodon_nigroviridis
ENSSBOG00000029989UPF3A7559.878ENSTBEG00000017186-10059.271Tupaia_belangeri
ENSSBOG00000029989UPF3A10066.109ENSTTRG00000015414UPF3A10066.109Tursiops_truncatus
ENSSBOG00000029989UPF3A8042.017ENSUAMG00000024565UPF3B7541.551Ursus_americanus
ENSSBOG00000029989UPF3A8040.227ENSUMAG00000002150UPF3B7641.111Ursus_maritimus
ENSSBOG00000029989UPF3A8570.370ENSVPAG00000003525UPF3A9270.370Vicugna_pacos
ENSSBOG00000029989UPF3A8041.489ENSVPAG00000009971UPF3B9046.316Vicugna_pacos
ENSSBOG00000029989UPF3A9564.912ENSVVUG00000013538UPF3A9264.912Vulpes_vulpes
ENSSBOG00000029989UPF3A8042.697ENSVVUG00000011594UPF3B5766.667Vulpes_vulpes
ENSSBOG00000029989UPF3A8041.223ENSXETG00000007440upf3b8141.129Xenopus_tropicalis
ENSSBOG00000029989UPF3A7954.986ENSXETG00000002572upf3a8154.986Xenopus_tropicalis
ENSSBOG00000029989UPF3A8456.836ENSXMAG00000013452upf3a7557.660Xiphophorus_maculatus
ENSSBOG00000029989UPF3A8137.802ENSXMAG00000013680upf3b8038.874Xiphophorus_maculatus

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