EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSBOG00000030262 (Gene tree)
Gene ID: 101049872
Gene Symbol: POLR1A
Alias: DKFZP586M0122|FLJ21915|RPA1|RPO1-4
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Saimiri_boliviensis_boliviensis
Status: putative
Strand: Plus strand
Length: 80660 bases
Position: chrJH378265.1:3420327-3500986
Accession: 17264
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSBOP00000027782	RNA_pol_Rpb1_5	PF04998.17	2.1e-103	1	1
ENSSBOP00000027782	RNA_pol_Rpb1_4	PF05000.17	1.5e-25	1	1
ENSSBOP00000027782	RNA_pol_Rpb1_2	PF00623.20	4.4e-70	1	1
ENSSBOP00000027782	RNA_pol_Rpb1_3	PF04983.18	5e-36	1	1
ENSSBOP00000027782	RNA_pol_Rpb1_1	PF04997.12	3.8e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSBOT00000044660	POLR1A-201	6617	XM_003942532	ENSSBOP00000027782	1720 (aa)	XP_003942581	A0A2K6U795

Gene Model

Click here to download ENSSBOG00000030262's gene model file

Pathways

Pathway ID	Pathway Name	Source
sbq03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSBOG00000030262's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSBOG00000030262	POLR1A	62	33.117	ENSSBOG00000022199	POLR3A	69	33.117
ENSSBOG00000030262	POLR1A	71	34.286	ENSSBOG00000000808	-	61	34.286

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSBOG00000030262	POLR1A	100	94.012	ENSG00000068654	POLR1A	100	94.012	Homo_sapiens
ENSSBOG00000030262	POLR1A	69	67.340	ENSAPOG00000017945	polr1a	99	67.340	Acanthochromis_polyacanthus
ENSSBOG00000030262	POLR1A	100	89.315	ENSAMEG00000005807	POLR1A	100	91.291	Ailuropoda_melanoleuca
ENSSBOG00000030262	POLR1A	100	62.999	ENSACIG00000022147	polr1a	100	62.811	Amphilophus_citrinellus
ENSSBOG00000030262	POLR1A	100	65.643	ENSAOCG00000017336	polr1a	100	67.676	Amphiprion_ocellaris
ENSSBOG00000030262	POLR1A	100	65.585	ENSAPEG00000016105	polr1a	100	65.643	Amphiprion_percula
ENSSBOG00000030262	POLR1A	100	65.453	ENSATEG00000016773	polr1a	100	65.318	Anabas_testudineus
ENSSBOG00000030262	POLR1A	86	72.764	ENSAPLG00000013871	POLR1A	99	71.630	Anas_platyrhynchos
ENSSBOG00000030262	POLR1A	99	69.902	ENSACAG00000012141	POLR1A	99	69.023	Anolis_carolinensis
ENSSBOG00000030262	POLR1A	100	97.442	ENSANAG00000033927	POLR1A	100	97.442	Aotus_nancymaae
ENSSBOG00000030262	POLR1A	100	62.536	ENSACLG00000020541	polr1a	100	61.668	Astatotilapia_calliptera
ENSSBOG00000030262	POLR1A	100	88.786	ENSBTAG00000006481	POLR1A	100	88.786	Bos_taurus
ENSSBOG00000030262	POLR1A	99	38.861	WBGene00012999	rpoa-1	98	38.587	Caenorhabditis_elegans
ENSSBOG00000030262	POLR1A	100	96.919	ENSCJAG00000019547	POLR1A	100	96.919	Callithrix_jacchus
ENSSBOG00000030262	POLR1A	100	89.309	ENSCAFG00000007613	POLR1A	100	89.134	Canis_familiaris
ENSSBOG00000030262	POLR1A	100	89.108	ENSCAFG00020014752	POLR1A	100	88.934	Canis_lupus_dingo
ENSSBOG00000030262	POLR1A	100	86.790	ENSCHIG00000018204	POLR1A	100	86.732	Capra_hircus
ENSSBOG00000030262	POLR1A	100	88.263	ENSTSYG00000002761	POLR1A	100	87.914	Carlito_syrichta
ENSSBOG00000030262	POLR1A	97	83.234	ENSCAPG00000010132	POLR1A	100	82.855	Cavia_aperea
ENSSBOG00000030262	POLR1A	100	87.689	ENSCPOG00000012350	POLR1A	100	87.515	Cavia_porcellus
ENSSBOG00000030262	POLR1A	100	97.907	ENSCCAG00000019839	POLR1A	100	97.907	Cebus_capucinus
ENSSBOG00000030262	POLR1A	100	94.535	ENSCATG00000029786	POLR1A	100	94.535	Cercocebus_atys
ENSSBOG00000030262	POLR1A	100	88.174	ENSCLAG00000005187	POLR1A	100	87.652	Chinchilla_lanigera
ENSSBOG00000030262	POLR1A	100	94.651	ENSCSAG00000016251	POLR1A	100	94.651	Chlorocebus_sabaeus
ENSSBOG00000030262	POLR1A	99	73.868	ENSCPBG00000001115	POLR1A	99	73.840	Chrysemys_picta_bellii
ENSSBOG00000030262	POLR1A	99	46.595	ENSCSAVG00000007184	-	91	54.658	Ciona_savignyi
ENSSBOG00000030262	POLR1A	100	91.400	ENSCANG00000031785	POLR1A	100	91.400	Colobus_angolensis_palliatus
ENSSBOG00000030262	POLR1A	100	82.166	ENSCGRG00001006651	Polr1a	100	82.050	Cricetulus_griseus_chok1gshd
ENSSBOG00000030262	POLR1A	60	86.364	ENSCGRG00000010834	Polr1a	100	86.170	Cricetulus_griseus_crigri
ENSSBOG00000030262	POLR1A	100	60.960	ENSCSEG00000020190	polr1a	100	61.449	Cynoglossus_semilaevis
ENSSBOG00000030262	POLR1A	100	64.658	ENSCVAG00000020941	polr1a	100	64.600	Cyprinodon_variegatus
ENSSBOG00000030262	POLR1A	100	66.647	ENSDARG00000098375	polr1a	100	66.415	Danio_rerio
ENSSBOG00000030262	POLR1A	100	81.565	ENSDNOG00000010829	POLR1A	100	81.159	Dasypus_novemcinctus
ENSSBOG00000030262	POLR1A	100	86.929	ENSDORG00000008298	Polr1a	100	86.755	Dipodomys_ordii
ENSSBOG00000030262	POLR1A	80	44.468	FBgn0019938	RpI1	99	43.312	Drosophila_melanogaster
ENSSBOG00000030262	POLR1A	72	100.000	ENSETEG00000000412	-	72	100.000	Echinops_telfairi
ENSSBOG00000030262	POLR1A	86	65.891	ENSEBUG00000005667	-	99	65.891	Eptatretus_burgeri
ENSSBOG00000030262	POLR1A	100	90.756	ENSEASG00005001625	POLR1A	100	90.756	Equus_asinus_asinus
ENSSBOG00000030262	POLR1A	100	90.640	ENSECAG00000036306	-	100	91.398	Equus_caballus
ENSSBOG00000030262	POLR1A	100	90.640	ENSECAG00000030510	-	100	91.398	Equus_caballus
ENSSBOG00000030262	POLR1A	100	90.640	ENSECAG00000010092	POLR1A	100	91.398	Equus_caballus
ENSSBOG00000030262	POLR1A	85	92.553	ENSEEUG00000000676	POLR1A	85	92.543	Erinaceus_europaeus
ENSSBOG00000030262	POLR1A	100	66.937	ENSELUG00000012769	polr1a	99	66.879	Esox_lucius
ENSSBOG00000030262	POLR1A	100	90.244	ENSFCAG00000008966	POLR1A	100	90.070	Felis_catus
ENSSBOG00000030262	POLR1A	99	70.775	ENSFALG00000010082	POLR1A	99	70.775	Ficedula_albicollis
ENSSBOG00000030262	POLR1A	100	88.269	ENSFDAG00000013726	POLR1A	100	87.456	Fukomys_damarensis
ENSSBOG00000030262	POLR1A	100	61.811	ENSFHEG00000005996	polr1a	100	61.632	Fundulus_heteroclitus
ENSSBOG00000030262	POLR1A	100	59.733	ENSGMOG00000002230	polr1a	100	59.849	Gadus_morhua
ENSSBOG00000030262	POLR1A	90	69.107	ENSGALG00000038160	-	99	68.549	Gallus_gallus
ENSSBOG00000030262	POLR1A	100	64.641	ENSGAFG00000015266	polr1a	100	63.788	Gambusia_affinis
ENSSBOG00000030262	POLR1A	100	64.451	ENSGACG00000018791	polr1a	100	64.553	Gasterosteus_aculeatus
ENSSBOG00000030262	POLR1A	90	74.564	ENSGAGG00000004984	-	96	80.278	Gopherus_agassizii
ENSSBOG00000030262	POLR1A	100	94.186	ENSGGOG00000001788	POLR1A	100	94.186	Gorilla_gorilla
ENSSBOG00000030262	POLR1A	90	64.457	ENSHBUG00000020021	polr1a	99	64.457	Haplochromis_burtoni
ENSSBOG00000030262	POLR1A	100	87.340	ENSHGLG00000006334	POLR1A	100	87.166	Heterocephalus_glaber_female
ENSSBOG00000030262	POLR1A	100	87.087	ENSHGLG00100006614	POLR1A	100	86.914	Heterocephalus_glaber_male
ENSSBOG00000030262	POLR1A	100	61.968	ENSHCOG00000003345	polr1a	100	61.503	Hippocampus_comes
ENSSBOG00000030262	POLR1A	100	65.954	ENSIPUG00000013174	polr1a	100	65.187	Ictalurus_punctatus
ENSSBOG00000030262	POLR1A	99	85.806	ENSSTOG00000012580	POLR1A	99	85.523	Ictidomys_tridecemlineatus
ENSSBOG00000030262	POLR1A	100	86.087	ENSJJAG00000013113	Polr1a	100	85.913	Jaculus_jaculus
ENSSBOG00000030262	POLR1A	100	65.738	ENSKMAG00000007399	polr1a	100	65.215	Kryptolebias_marmoratus
ENSSBOG00000030262	POLR1A	95	67.902	ENSLBEG00000015401	polr1a	99	67.997	Labrus_bergylta
ENSSBOG00000030262	POLR1A	53	76.144	ENSLACG00000003218	polr1a	100	76.144	Latimeria_chalumnae
ENSSBOG00000030262	POLR1A	100	70.520	ENSLOCG00000010881	polr1a	100	69.850	Lepisosteus_oculatus
ENSSBOG00000030262	POLR1A	100	88.889	ENSLAFG00000014948	POLR1A	100	88.947	Loxodonta_africana
ENSSBOG00000030262	POLR1A	100	94.651	ENSMFAG00000046097	POLR1A	100	94.651	Macaca_fascicularis
ENSSBOG00000030262	POLR1A	100	94.535	ENSMMUG00000015815	POLR1A	100	94.535	Macaca_mulatta
ENSSBOG00000030262	POLR1A	100	94.593	ENSMNEG00000043313	POLR1A	100	94.593	Macaca_nemestrina
ENSSBOG00000030262	POLR1A	100	93.895	ENSMLEG00000042428	POLR1A	100	93.895	Mandrillus_leucophaeus
ENSSBOG00000030262	POLR1A	100	65.527	ENSMAMG00000016565	polr1a	100	65.623	Mastacembelus_armatus
ENSSBOG00000030262	POLR1A	100	65.779	ENSMZEG00005004915	polr1a	100	65.104	Maylandia_zebra
ENSSBOG00000030262	POLR1A	99	68.794	ENSMGAG00000013111	POLR1A	99	68.910	Meleagris_gallopavo
ENSSBOG00000030262	POLR1A	92	86.671	ENSMAUG00000008497	Polr1a	100	86.481	Mesocricetus_auratus
ENSSBOG00000030262	POLR1A	100	91.168	ENSMICG00000000757	POLR1A	100	91.168	Microcebus_murinus
ENSSBOG00000030262	POLR1A	100	86.335	ENSMOCG00000000122	Polr1a	100	86.219	Microtus_ochrogaster
ENSSBOG00000030262	POLR1A	100	65.409	ENSMMOG00000010216	polr1a	100	65.391	Mola_mola
ENSSBOG00000030262	POLR1A	100	74.455	ENSMODG00000009335	POLR1A	100	74.396	Monodelphis_domestica
ENSSBOG00000030262	POLR1A	100	65.255	ENSMALG00000013363	polr1a	100	64.890	Monopterus_albus
ENSSBOG00000030262	POLR1A	100	85.582	MGP_CAROLIEiJ_G0028494	Polr1a	100	85.177	Mus_caroli
ENSSBOG00000030262	POLR1A	100	85.929	ENSMUSG00000049553	Polr1a	100	85.524	Mus_musculus
ENSSBOG00000030262	POLR1A	100	86.003	MGP_PahariEiJ_G0022230	Polr1a	100	85.656	Mus_pahari
ENSSBOG00000030262	POLR1A	100	84.007	MGP_SPRETEiJ_G0029499	Polr1a	100	84.247	Mus_spretus
ENSSBOG00000030262	POLR1A	100	89.477	ENSMPUG00000009135	POLR1A	100	89.302	Mustela_putorius_furo
ENSSBOG00000030262	POLR1A	100	88.388	ENSMLUG00000015723	POLR1A	100	88.042	Myotis_lucifugus
ENSSBOG00000030262	POLR1A	100	86.458	ENSNGAG00000017907	Polr1a	100	86.343	Nannospalax_galili
ENSSBOG00000030262	POLR1A	100	65.779	ENSNBRG00000000519	polr1a	100	65.026	Neolamprologus_brichardi
ENSSBOG00000030262	POLR1A	100	91.956	ENSNLEG00000002264	POLR1A	100	91.956	Nomascus_leucogenys
ENSSBOG00000030262	POLR1A	75	93.701	ENSMEUG00000011665	-	75	93.701	Notamacropus_eugenii
ENSSBOG00000030262	POLR1A	99	81.159	ENSOPRG00000008269	POLR1A	100	81.492	Ochotona_princeps
ENSSBOG00000030262	POLR1A	100	88.211	ENSODEG00000003542	POLR1A	100	87.689	Octodon_degus
ENSSBOG00000030262	POLR1A	100	65.895	ENSONIG00000015895	polr1a	100	65.856	Oreochromis_niloticus
ENSSBOG00000030262	POLR1A	100	89.483	ENSOCUG00000010138	POLR1A	100	89.483	Oryctolagus_cuniculus
ENSSBOG00000030262	POLR1A	100	64.910	ENSORLG00000008753	polr1a	99	64.832	Oryzias_latipes
ENSSBOG00000030262	POLR1A	100	63.752	ENSORLG00020020726	polr1a	99	63.557	Oryzias_latipes_hni
ENSSBOG00000030262	POLR1A	96	76.596	ENSORLG00015016071	polr1a	99	76.667	Oryzias_latipes_hsok
ENSSBOG00000030262	POLR1A	100	90.000	ENSOGAG00000004031	POLR1A	100	90.000	Otolemur_garnettii
ENSSBOG00000030262	POLR1A	100	87.928	ENSOARG00000020601	POLR1A	100	87.986	Ovis_aries
ENSSBOG00000030262	POLR1A	100	93.953	ENSPPAG00000042450	POLR1A	100	93.953	Pan_paniscus
ENSSBOG00000030262	POLR1A	100	90.476	ENSPPRG00000006702	POLR1A	100	90.128	Panthera_pardus
ENSSBOG00000030262	POLR1A	100	89.757	ENSPTIG00000018783	POLR1A	100	89.583	Panthera_tigris_altaica
ENSSBOG00000030262	POLR1A	100	93.895	ENSPTRG00000012147	POLR1A	100	93.895	Pan_troglodytes
ENSSBOG00000030262	POLR1A	100	94.419	ENSPANG00000025908	POLR1A	100	94.419	Papio_anubis
ENSSBOG00000030262	POLR1A	94	77.083	ENSPKIG00000005468	polr1a	99	77.083	Paramormyrops_kingsleyae
ENSSBOG00000030262	POLR1A	63	70.273	ENSPSIG00000009321	-	99	70.750	Pelodiscus_sinensis
ENSSBOG00000030262	POLR1A	54	68.021	ENSPMGG00000009718	polr1a	95	68.021	Periophthalmus_magnuspinnatus
ENSSBOG00000030262	POLR1A	100	86.979	ENSPEMG00000022224	Polr1a	100	86.914	Peromyscus_maniculatus_bairdii
ENSSBOG00000030262	POLR1A	95	78.919	ENSPCIG00000004222	POLR1A	99	78.906	Phascolarctos_cinereus
ENSSBOG00000030262	POLR1A	100	65.162	ENSPFOG00000005025	polr1a	100	65.026	Poecilia_formosa
ENSSBOG00000030262	POLR1A	100	65.411	ENSPLAG00000021389	polr1a	100	65.353	Poecilia_latipinna
ENSSBOG00000030262	POLR1A	100	63.731	ENSPMEG00000006463	polr1a	100	63.868	Poecilia_mexicana
ENSSBOG00000030262	POLR1A	100	65.278	ENSPREG00000002389	polr1a	100	65.104	Poecilia_reticulata
ENSSBOG00000030262	POLR1A	100	93.430	ENSPPYG00000012217	POLR1A	100	93.430	Pongo_abelii
ENSSBOG00000030262	POLR1A	92	96.000	ENSPCAG00000011582	POLR1A	92	96.000	Procavia_capensis
ENSSBOG00000030262	POLR1A	100	90.761	ENSPCOG00000026987	POLR1A	100	90.761	Propithecus_coquereli
ENSSBOG00000030262	POLR1A	95	89.706	ENSPVAG00000012674	POLR1A	95	89.046	Pteropus_vampyrus
ENSSBOG00000030262	POLR1A	100	65.663	ENSPNYG00000000026	polr1a	100	64.968	Pundamilia_nyererei
ENSSBOG00000030262	POLR1A	100	66.686	ENSPNAG00000019223	polr1a	99	69.131	Pygocentrus_nattereri
ENSSBOG00000030262	POLR1A	100	87.087	ENSRNOG00000009545	Polr1a	100	86.798	Rattus_norvegicus
ENSSBOG00000030262	POLR1A	100	93.837	ENSRBIG00000028335	POLR1A	100	93.837	Rhinopithecus_bieti
ENSSBOG00000030262	POLR1A	100	93.779	ENSRROG00000031473	POLR1A	100	93.779	Rhinopithecus_roxellana
ENSSBOG00000030262	POLR1A	99	36.706	YOR341W	RPA190	99	36.552	Saccharomyces_cerevisiae
ENSSBOG00000030262	POLR1A	100	72.596	ENSSHAG00000014739	POLR1A	100	73.356	Sarcophilus_harrisii
ENSSBOG00000030262	POLR1A	100	67.225	ENSSFOG00015019716	polr1a	100	67.054	Scleropages_formosus
ENSSBOG00000030262	POLR1A	100	66.049	ENSSMAG00000014342	polr1a	100	65.159	Scophthalmus_maximus
ENSSBOG00000030262	POLR1A	100	65.727	ENSSDUG00000014631	polr1a	100	66.358	Seriola_dumerili
ENSSBOG00000030262	POLR1A	100	64.002	ENSSLDG00000024095	polr1a	100	64.397	Seriola_lalandi_dorsalis
ENSSBOG00000030262	POLR1A	75	95.745	ENSSARG00000003136	-	76	95.745	Sorex_araneus
ENSSBOG00000030262	POLR1A	94	77.949	ENSSPUG00000004215	POLR1A	98	77.949	Sphenodon_punctatus
ENSSBOG00000030262	POLR1A	63	71.088	ENSSPAG00000016341	polr1a	94	71.088	Stegastes_partitus
ENSSBOG00000030262	POLR1A	83	89.629	ENSSSCG00000008226	POLR1A	99	89.599	Sus_scrofa
ENSSBOG00000030262	POLR1A	99	70.076	ENSTGUG00000010704	POLR1A	100	70.076	Taeniopygia_guttata
ENSSBOG00000030262	POLR1A	100	64.257	ENSTRUG00000002210	polr1a	99	63.868	Takifugu_rubripes
ENSSBOG00000030262	POLR1A	100	60.172	ENSTNIG00000010116	polr1a	100	60.172	Tetraodon_nigroviridis
ENSSBOG00000030262	POLR1A	74	95.575	ENSTBEG00000008646	POLR1A	74	95.575	Tupaia_belangeri
ENSSBOG00000030262	POLR1A	100	84.611	ENSTTRG00000008597	POLR1A	100	84.660	Tursiops_truncatus
ENSSBOG00000030262	POLR1A	69	90.110	ENSUAMG00000012158	-	94	89.518	Ursus_americanus
ENSSBOG00000030262	POLR1A	100	88.734	ENSUMAG00000006700	POLR1A	100	88.547	Ursus_maritimus
ENSSBOG00000030262	POLR1A	100	89.244	ENSVVUG00000001245	POLR1A	100	89.070	Vulpes_vulpes
ENSSBOG00000030262	POLR1A	100	68.132	ENSXETG00000001952	polr1a	100	69.048	Xenopus_tropicalis
ENSSBOG00000030262	POLR1A	100	65.336	ENSXMAG00000004032	polr1a	100	65.104	Xiphophorus_maculatus