EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSBOG00000032461 (Gene tree)
Gene ID: 101048788
Gene Symbol: SND1
Alias: TDRD11|p100
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Saimiri_boliviensis_boliviensis
Status: putative
Strand: Minus strand
Length: 445444 bases
Position: chrJH378107.1:7865565-8311008
Accession: 30646
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSBOP00000033292	TUDOR	PF00567.24	1.3e-27	1	1
ENSSBOP00000033278	TUDOR	PF00567.24	1.4e-27	1	1
ENSSBOP00000033274	TUDOR	PF00567.24	1.4e-27	1	1
ENSSBOP00000033251	TUDOR	PF00567.24	1.4e-27	1	1
ENSSBOP00000033278	SNase	PF00565.17	1.7e-68	1	5
ENSSBOP00000033278	SNase	PF00565.17	1.7e-68	2	5
ENSSBOP00000033278	SNase	PF00565.17	1.7e-68	3	5
ENSSBOP00000033278	SNase	PF00565.17	1.7e-68	4	5
ENSSBOP00000033278	SNase	PF00565.17	1.7e-68	5	5
ENSSBOP00000033274	SNase	PF00565.17	1.8e-68	1	5
ENSSBOP00000033274	SNase	PF00565.17	1.8e-68	2	5
ENSSBOP00000033274	SNase	PF00565.17	1.8e-68	3	5
ENSSBOP00000033274	SNase	PF00565.17	1.8e-68	4	5
ENSSBOP00000033274	SNase	PF00565.17	1.8e-68	5	5
ENSSBOP00000033251	SNase	PF00565.17	1.9e-68	1	5
ENSSBOP00000033251	SNase	PF00565.17	1.9e-68	2	5
ENSSBOP00000033251	SNase	PF00565.17	1.9e-68	3	5
ENSSBOP00000033251	SNase	PF00565.17	1.9e-68	4	5
ENSSBOP00000033251	SNase	PF00565.17	1.9e-68	5	5
ENSSBOP00000033292	SNase	PF00565.17	1.3e-59	1	4
ENSSBOP00000033292	SNase	PF00565.17	1.3e-59	2	4
ENSSBOP00000033292	SNase	PF00565.17	1.3e-59	3	4
ENSSBOP00000033292	SNase	PF00565.17	1.3e-59	4	4
ENSSBOP00000033306	SNase	PF00565.17	1.7e-48	1	3
ENSSBOP00000033306	SNase	PF00565.17	1.7e-48	2	3
ENSSBOP00000033306	SNase	PF00565.17	1.7e-48	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSBOT00000050205	SND1-204	2622	-	ENSSBOP00000033292	873 (aa)	-	A0A2K6UN54
ENSSBOT00000050219	SND1-205	1845	-	ENSSBOP00000033306	614 (aa)	-	A0A2K6UN38
ENSSBOT00000050164	SND1-201	6336	XM_003921017	ENSSBOP00000033251	910 (aa)	XP_003921066	A0A2K6UMY6
ENSSBOT00000050187	SND1-202	2712	-	ENSSBOP00000033274	903 (aa)	-	A0A2K6UMW6
ENSSBOT00000050191	SND1-203	2685	-	ENSSBOP00000033278	894 (aa)	-	A0A2K6UMZ5

Gene Model

Click here to download ENSSBOG00000032461's gene model file

Pathways

Pathway ID	Pathway Name	Source
sbq05203	Viral carcinogenesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSBOG00000032461's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSBOG00000032461	SND1	100	99.121	ENSG00000197157	SND1	100	99.121	Homo_sapiens
ENSSBOG00000032461	SND1	99	84.763	ENSAPOG00000017599	snd1	99	84.538	Acanthochromis_polyacanthus
ENSSBOG00000032461	SND1	100	98.794	ENSAMEG00000004664	SND1	94	98.794	Ailuropoda_melanoleuca
ENSSBOG00000032461	SND1	99	82.034	ENSACIG00000003551	snd1	99	81.960	Amphilophus_citrinellus
ENSSBOG00000032461	SND1	99	84.537	ENSAOCG00000014166	snd1	99	84.316	Amphiprion_ocellaris
ENSSBOG00000032461	SND1	99	84.537	ENSAPEG00000007067	snd1	99	84.316	Amphiprion_percula
ENSSBOG00000032461	SND1	96	85.739	ENSATEG00000018475	snd1	88	84.036	Anabas_testudineus
ENSSBOG00000032461	SND1	100	99.560	ENSANAG00000034463	SND1	100	99.560	Aotus_nancymaae
ENSSBOG00000032461	SND1	99	84.312	ENSACLG00000022897	snd1	99	84.076	Astatotilapia_calliptera
ENSSBOG00000032461	SND1	99	84.797	ENSAMXG00000016318	snd1	98	84.744	Astyanax_mexicanus
ENSSBOG00000032461	SND1	100	98.901	ENSBTAG00000010692	SND1	100	98.901	Bos_taurus
ENSSBOG00000032461	SND1	95	51.607	WBGene00006626	tsn-1	98	47.201	Caenorhabditis_elegans
ENSSBOG00000032461	SND1	100	99.341	ENSCJAG00000017668	SND1	100	99.341	Callithrix_jacchus
ENSSBOG00000032461	SND1	100	99.231	ENSCAFG00000001700	SND1	100	99.231	Canis_familiaris
ENSSBOG00000032461	SND1	100	99.231	ENSCAFG00020021639	SND1	100	99.231	Canis_lupus_dingo
ENSSBOG00000032461	SND1	100	99.231	ENSCHIG00000023390	SND1	100	99.231	Capra_hircus
ENSSBOG00000032461	SND1	94	98.793	ENSTSYG00000004979	SND1	98	98.793	Carlito_syrichta
ENSSBOG00000032461	SND1	99	86.728	ENSCAPG00000010677	SND1	97	86.728	Cavia_aperea
ENSSBOG00000032461	SND1	100	98.352	ENSCPOG00000006251	SND1	100	98.352	Cavia_porcellus
ENSSBOG00000032461	SND1	100	99.670	ENSCCAG00000036847	SND1	100	99.670	Cebus_capucinus
ENSSBOG00000032461	SND1	100	99.341	ENSCATG00000035214	SND1	100	99.341	Cercocebus_atys
ENSSBOG00000032461	SND1	100	98.242	ENSCLAG00000011796	SND1	100	98.242	Chinchilla_lanigera
ENSSBOG00000032461	SND1	100	99.341	ENSCSAG00000010182	SND1	100	99.341	Chlorocebus_sabaeus
ENSSBOG00000032461	SND1	73	98.000	ENSCHOG00000002218	SND1	80	98.000	Choloepus_hoffmanni
ENSSBOG00000032461	SND1	99	92.986	ENSCPBG00000018094	SND1	100	90.969	Chrysemys_picta_bellii
ENSSBOG00000032461	SND1	100	55.902	ENSCING00000000524	-	98	57.143	Ciona_intestinalis
ENSSBOG00000032461	SND1	99	58.090	ENSCSAVG00000008807	-	99	58.232	Ciona_savignyi
ENSSBOG00000032461	SND1	100	99.341	ENSCANG00000035119	SND1	100	99.341	Colobus_angolensis_palliatus
ENSSBOG00000032461	SND1	100	97.363	ENSCGRG00001022514	Snd1	100	97.363	Cricetulus_griseus_chok1gshd
ENSSBOG00000032461	SND1	99	97.398	ENSCGRG00000012277	Snd1	99	97.398	Cricetulus_griseus_crigri
ENSSBOG00000032461	SND1	99	84.199	ENSCSEG00000008661	snd1	98	84.228	Cynoglossus_semilaevis
ENSSBOG00000032461	SND1	99	85.102	ENSCVAG00000010316	snd1	100	83.563	Cyprinodon_variegatus
ENSSBOG00000032461	SND1	99	85.569	ENSDARG00000006766	snd1	97	87.590	Danio_rerio
ENSSBOG00000032461	SND1	99	96.163	ENSDNOG00000006795	SND1	100	96.167	Dasypus_novemcinctus
ENSSBOG00000032461	SND1	100	98.791	ENSDORG00000000336	Snd1	100	98.791	Dipodomys_ordii
ENSSBOG00000032461	SND1	98	50.604	FBgn0035121	Tudor-SN	98	50.704	Drosophila_melanogaster
ENSSBOG00000032461	SND1	92	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSSBOG00000032461	SND1	86	66.234	ENSEBUG00000014201	-	84	75.956	Eptatretus_burgeri
ENSSBOG00000032461	SND1	100	97.624	ENSEASG00005008513	SND1	100	97.624	Equus_asinus_asinus
ENSSBOG00000032461	SND1	100	99.231	ENSECAG00000011451	SND1	100	99.231	Equus_caballus
ENSSBOG00000032461	SND1	93	97.002	ENSEEUG00000014737	SND1	100	86.813	Erinaceus_europaeus
ENSSBOG00000032461	SND1	99	83.183	ENSELUG00000001805	snd1	95	83.055	Esox_lucius
ENSSBOG00000032461	SND1	100	99.231	ENSFCAG00000008289	SND1	100	99.231	Felis_catus
ENSSBOG00000032461	SND1	100	98.462	ENSFDAG00000015881	SND1	100	98.462	Fukomys_damarensis
ENSSBOG00000032461	SND1	96	85.908	ENSFHEG00000004093	snd1	97	84.517	Fundulus_heteroclitus
ENSSBOG00000032461	SND1	55	90.323	ENSGMOG00000018932	snd1	57	90.323	Gadus_morhua
ENSSBOG00000032461	SND1	54	94.624	ENSGALG00000052684	-	50	94.624	Gallus_gallus
ENSSBOG00000032461	SND1	99	85.102	ENSGAFG00000008421	snd1	99	85.102	Gambusia_affinis
ENSSBOG00000032461	SND1	100	53.746	ENSGACG00000019793	snd1	99	53.392	Gasterosteus_aculeatus
ENSSBOG00000032461	SND1	100	99.341	ENSGGOG00000009614	SND1	100	99.341	Gorilla_gorilla
ENSSBOG00000032461	SND1	99	84.312	ENSHBUG00000019135	snd1	99	84.076	Haplochromis_burtoni
ENSSBOG00000032461	SND1	100	98.132	ENSHGLG00000003618	SND1	100	98.132	Heterocephalus_glaber_female
ENSSBOG00000032461	SND1	99	98.077	ENSHGLG00100012449	SND1	100	97.680	Heterocephalus_glaber_male
ENSSBOG00000032461	SND1	99	83.860	ENSHCOG00000005266	snd1	100	82.108	Hippocampus_comes
ENSSBOG00000032461	SND1	99	83.784	ENSIPUG00000013279	snd1	98	83.742	Ictalurus_punctatus
ENSSBOG00000032461	SND1	100	98.791	ENSSTOG00000002140	SND1	100	98.791	Ictidomys_tridecemlineatus
ENSSBOG00000032461	SND1	100	98.901	ENSJJAG00000009561	Snd1	100	98.901	Jaculus_jaculus
ENSSBOG00000032461	SND1	100	83.882	ENSKMAG00000016997	snd1	98	84.899	Kryptolebias_marmoratus
ENSSBOG00000032461	SND1	99	86.316	ENSLBEG00000013563	snd1	99	83.315	Labrus_bergylta
ENSSBOG00000032461	SND1	99	85.682	ENSLOCG00000015537	snd1	98	85.447	Lepisosteus_oculatus
ENSSBOG00000032461	SND1	100	98.242	ENSLAFG00000009696	SND1	100	98.242	Loxodonta_africana
ENSSBOG00000032461	SND1	100	99.341	ENSMFAG00000038114	SND1	100	99.341	Macaca_fascicularis
ENSSBOG00000032461	SND1	100	99.341	ENSMMUG00000015432	SND1	100	99.341	Macaca_mulatta
ENSSBOG00000032461	SND1	100	99.341	ENSMNEG00000039808	SND1	100	99.341	Macaca_nemestrina
ENSSBOG00000032461	SND1	100	99.231	ENSMLEG00000029040	SND1	100	99.231	Mandrillus_leucophaeus
ENSSBOG00000032461	SND1	99	84.537	ENSMAMG00000011739	snd1	98	84.487	Mastacembelus_armatus
ENSSBOG00000032461	SND1	99	84.312	ENSMZEG00005005681	snd1	99	84.076	Maylandia_zebra
ENSSBOG00000032461	SND1	100	99.121	ENSMICG00000000097	SND1	100	99.121	Microcebus_murinus
ENSSBOG00000032461	SND1	100	98.132	ENSMOCG00000005040	Snd1	100	98.132	Microtus_ochrogaster
ENSSBOG00000032461	SND1	99	84.424	ENSMMOG00000001795	snd1	99	84.205	Mola_mola
ENSSBOG00000032461	SND1	99	96.041	ENSMODG00000015182	SND1	99	95.875	Monodelphis_domestica
ENSSBOG00000032461	SND1	100	83.224	ENSMALG00000012071	snd1	100	82.327	Monopterus_albus
ENSSBOG00000032461	SND1	100	97.802	MGP_CAROLIEiJ_G0028159	Snd1	100	97.802	Mus_caroli
ENSSBOG00000032461	SND1	100	97.582	ENSMUSG00000001424	Snd1	100	97.582	Mus_musculus
ENSSBOG00000032461	SND1	100	97.802	MGP_PahariEiJ_G0021917	Snd1	100	98.314	Mus_pahari
ENSSBOG00000032461	SND1	100	97.802	MGP_SPRETEiJ_G0029159	Snd1	100	97.802	Mus_spretus
ENSSBOG00000032461	SND1	100	98.571	ENSMPUG00000006545	SND1	100	98.571	Mustela_putorius_furo
ENSSBOG00000032461	SND1	99	97.318	ENSMLUG00000017130	SND1	99	97.318	Myotis_lucifugus
ENSSBOG00000032461	SND1	100	98.132	ENSNGAG00000011186	Snd1	100	98.132	Nannospalax_galili
ENSSBOG00000032461	SND1	99	84.199	ENSNBRG00000006681	snd1	99	83.964	Neolamprologus_brichardi
ENSSBOG00000032461	SND1	100	99.231	ENSNLEG00000012263	SND1	100	99.322	Nomascus_leucogenys
ENSSBOG00000032461	SND1	93	100.000	ENSOPRG00000013405	SND1	92	100.000	Ochotona_princeps
ENSSBOG00000032461	SND1	100	98.462	ENSODEG00000011502	SND1	100	98.462	Octodon_degus
ENSSBOG00000032461	SND1	99	84.199	ENSONIG00000011481	snd1	96	83.964	Oreochromis_niloticus
ENSSBOG00000032461	SND1	99	94.683	ENSOANG00000000817	SND1	99	93.757	Ornithorhynchus_anatinus
ENSSBOG00000032461	SND1	100	97.582	ENSOCUG00000001620	SND1	100	97.582	Oryctolagus_cuniculus
ENSSBOG00000032461	SND1	99	83.352	ENSORLG00000015201	snd1	98	83.799	Oryzias_latipes
ENSSBOG00000032461	SND1	99	83.464	ENSORLG00020013991	snd1	98	83.911	Oryzias_latipes_hni
ENSSBOG00000032461	SND1	99	83.464	ENSORLG00015012436	snd1	98	83.911	Oryzias_latipes_hsok
ENSSBOG00000032461	SND1	99	84.312	ENSOMEG00000006406	snd1	98	84.340	Oryzias_melastigma
ENSSBOG00000032461	SND1	100	98.794	ENSOGAG00000013356	SND1	94	98.794	Otolemur_garnettii
ENSSBOG00000032461	SND1	99	96.267	ENSOARG00000002149	SND1	100	96.271	Ovis_aries
ENSSBOG00000032461	SND1	100	99.231	ENSPPAG00000042947	SND1	100	99.231	Pan_paniscus
ENSSBOG00000032461	SND1	100	99.231	ENSPPRG00000004494	SND1	100	99.231	Panthera_pardus
ENSSBOG00000032461	SND1	100	99.121	ENSPTIG00000014214	SND1	100	99.121	Panthera_tigris_altaica
ENSSBOG00000032461	SND1	100	99.231	ENSPTRG00000023911	SND1	100	99.231	Pan_troglodytes
ENSSBOG00000032461	SND1	99	99.209	ENSPANG00000011997	SND1	99	99.322	Papio_anubis
ENSSBOG00000032461	SND1	99	81.635	ENSPKIG00000023494	snd1	98	81.687	Paramormyrops_kingsleyae
ENSSBOG00000032461	SND1	93	84.266	ENSPMGG00000003629	snd1	100	82.994	Periophthalmus_magnuspinnatus
ENSSBOG00000032461	SND1	100	98.022	ENSPEMG00000010240	Snd1	100	98.022	Peromyscus_maniculatus_bairdii
ENSSBOG00000032461	SND1	93	79.685	ENSPMAG00000007915	-	99	73.559	Petromyzon_marinus
ENSSBOG00000032461	SND1	100	96.374	ENSPCIG00000011561	SND1	100	96.374	Phascolarctos_cinereus
ENSSBOG00000032461	SND1	100	83.553	ENSPFOG00000001557	snd1	99	84.427	Poecilia_formosa
ENSSBOG00000032461	SND1	100	83.553	ENSPLAG00000018459	snd1	96	84.427	Poecilia_latipinna
ENSSBOG00000032461	SND1	100	83.991	ENSPMEG00000006803	snd1	99	84.872	Poecilia_mexicana
ENSSBOG00000032461	SND1	100	83.882	ENSPREG00000002189	snd1	99	84.761	Poecilia_reticulata
ENSSBOG00000032461	SND1	97	96.627	ENSPPYG00000017972	SND1	100	99.132	Pongo_abelii
ENSSBOG00000032461	SND1	100	86.703	ENSPCAG00000011305	SND1	99	86.622	Procavia_capensis
ENSSBOG00000032461	SND1	100	99.121	ENSPCOG00000026791	SND1	100	99.121	Propithecus_coquereli
ENSSBOG00000032461	SND1	100	97.143	ENSPVAG00000013945	SND1	100	97.143	Pteropus_vampyrus
ENSSBOG00000032461	SND1	99	84.312	ENSPNYG00000000932	snd1	99	84.076	Pundamilia_nyererei
ENSSBOG00000032461	SND1	99	84.572	ENSPNAG00000001206	snd1	98	84.444	Pygocentrus_nattereri
ENSSBOG00000032461	SND1	99	97.624	ENSRNOG00000031173	Snd1	99	97.467	Rattus_norvegicus
ENSSBOG00000032461	SND1	96	97.468	ENSRBIG00000027782	-	93	99.620	Rhinopithecus_bieti
ENSSBOG00000032461	SND1	100	99.341	ENSRROG00000033020	SND1	100	99.341	Rhinopithecus_roxellana
ENSSBOG00000032461	SND1	99	93.552	ENSSHAG00000015359	SND1	100	93.131	Sarcophilus_harrisii
ENSSBOG00000032461	SND1	99	83.557	ENSSFOG00015001103	snd1	98	83.574	Scleropages_formosus
ENSSBOG00000032461	SND1	99	83.634	ENSSMAG00000001932	snd1	93	83.408	Scophthalmus_maximus
ENSSBOG00000032461	SND1	99	84.537	ENSSDUG00000002699	snd1	92	84.316	Seriola_dumerili
ENSSBOG00000032461	SND1	100	76.206	ENSSLDG00000001950	snd1	98	76.974	Seriola_lalandi_dorsalis
ENSSBOG00000032461	SND1	88	99.057	ENSSARG00000004877	SND1	92	99.057	Sorex_araneus
ENSSBOG00000032461	SND1	95	85.787	ENSSPUG00000017586	SND1	97	86.667	Sphenodon_punctatus
ENSSBOG00000032461	SND1	93	86.819	ENSSPAG00000021398	snd1	96	86.736	Stegastes_partitus
ENSSBOG00000032461	SND1	100	98.901	ENSSSCG00000016590	SND1	100	98.901	Sus_scrofa
ENSSBOG00000032461	SND1	99	85.098	ENSTRUG00000014067	snd1	98	83.669	Takifugu_rubripes
ENSSBOG00000032461	SND1	100	83.224	ENSTNIG00000011019	snd1	98	85.185	Tetraodon_nigroviridis
ENSSBOG00000032461	SND1	95	93.160	ENSTBEG00000003999	SND1	100	93.160	Tupaia_belangeri
ENSSBOG00000032461	SND1	100	94.286	ENSTTRG00000006059	SND1	100	94.286	Tursiops_truncatus
ENSSBOG00000032461	SND1	93	99.049	ENSUAMG00000005604	-	93	99.049	Ursus_americanus
ENSSBOG00000032461	SND1	87	84.974	ENSUAMG00000002820	-	86	90.054	Ursus_americanus
ENSSBOG00000032461	SND1	100	99.011	ENSUMAG00000005960	SND1	100	99.011	Ursus_maritimus
ENSSBOG00000032461	SND1	92	87.831	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSSBOG00000032461	SND1	100	99.011	ENSVVUG00000007226	SND1	100	99.011	Vulpes_vulpes
ENSSBOG00000032461	SND1	96	88.946	ENSXETG00000023043	snd1	100	84.668	Xenopus_tropicalis
ENSSBOG00000032461	SND1	93	85.490	ENSXCOG00000013629	snd1	99	81.473	Xiphophorus_couchianus
ENSSBOG00000032461	SND1	99	85.102	ENSXMAG00000011469	snd1	99	84.983	Xiphophorus_maculatus