EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSBOG00000033339 (Gene tree)
Gene ID: 101053903
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Saimiri_boliviensis_boliviensis
Status: putative
Strand: Minus strand
Length: 36651 bases
Position: chrJH378199.1:4686751-4723401
Accession: 24644
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSBOP00000034310	EST1	PF10374.9	1.1e-23	1	1
ENSSBOP00000034310	EST1_DNA_bind	PF10373.9	3.7e-40	1	2
ENSSBOP00000034310	EST1_DNA_bind	PF10373.9	3.7e-40	2	2
ENSSBOP00000034310	PIN_4	PF13638.6	3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSBOT00000051230	SMG5-201	4622	XM_003937829	ENSSBOP00000034310	1016 (aa)	XP_003937878	A0A2K6UQV4

Gene Model

Click here to download ENSSBOG00000033339's gene model file

Pathways

Pathway ID	Pathway Name	Source
sbq03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSBOG00000033339's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSBOG00000033339	SMG5	100	98.130	ENSG00000198952	SMG5	100	98.130	Homo_sapiens
ENSSBOG00000033339	SMG5	99	67.415	ENSAPOG00000019690	smg5	93	77.336	Acanthochromis_polyacanthus
ENSSBOG00000033339	SMG5	98	92.749	ENSAMEG00000014458	SMG5	100	92.749	Ailuropoda_melanoleuca
ENSSBOG00000033339	SMG5	99	65.125	ENSACIG00000001353	smg5	99	65.703	Amphilophus_citrinellus
ENSSBOG00000033339	SMG5	98	64.700	ENSAOCG00000019483	smg5	93	78.302	Amphiprion_ocellaris
ENSSBOG00000033339	SMG5	98	65.941	ENSAPEG00000022949	smg5	93	78.066	Amphiprion_percula
ENSSBOG00000033339	SMG5	99	65.896	ENSATEG00000005348	smg5	99	67.313	Anabas_testudineus
ENSSBOG00000033339	SMG5	98	79.024	ENSAPLG00000010263	SMG5	100	78.732	Anas_platyrhynchos
ENSSBOG00000033339	SMG5	100	99.213	ENSANAG00000032899	SMG5	100	99.213	Aotus_nancymaae
ENSSBOG00000033339	SMG5	99	64.683	ENSACLG00000009311	smg5	99	66.218	Astatotilapia_calliptera
ENSSBOG00000033339	SMG5	100	95.866	ENSBTAG00000009435	SMG5	100	95.866	Bos_taurus
ENSSBOG00000033339	SMG5	99	44.487	ENSBTAG00000021747	-	99	43.520	Bos_taurus
ENSSBOG00000033339	SMG5	100	99.213	ENSCJAG00000005684	SMG5	100	99.213	Callithrix_jacchus
ENSSBOG00000033339	SMG5	100	94.488	ENSCAFG00000016839	SMG5	100	93.799	Canis_familiaris
ENSSBOG00000033339	SMG5	100	94.488	ENSCAFG00020006061	SMG5	100	93.799	Canis_lupus_dingo
ENSSBOG00000033339	SMG5	99	44.828	ENSCHIG00000006323	-	99	43.652	Capra_hircus
ENSSBOG00000033339	SMG5	100	95.768	ENSCHIG00000007709	SMG5	100	95.768	Capra_hircus
ENSSBOG00000033339	SMG5	100	96.559	ENSTSYG00000004099	SMG5	100	96.559	Carlito_syrichta
ENSSBOG00000033339	SMG5	97	74.442	ENSCAPG00000003631	SMG5	100	75.078	Cavia_aperea
ENSSBOG00000033339	SMG5	100	95.580	ENSCPOG00000015696	SMG5	100	95.285	Cavia_porcellus
ENSSBOG00000033339	SMG5	100	99.409	ENSCCAG00000027409	SMG5	100	99.409	Cebus_capucinus
ENSSBOG00000033339	SMG5	100	98.327	ENSCATG00000030539	SMG5	100	98.327	Cercocebus_atys
ENSSBOG00000033339	SMG5	100	95.776	ENSCLAG00000003983	SMG5	100	95.678	Chinchilla_lanigera
ENSSBOG00000033339	SMG5	100	98.228	ENSCSAG00000002120	SMG5	100	98.228	Chlorocebus_sabaeus
ENSSBOG00000033339	SMG5	54	93.796	ENSCHOG00000008741	-	57	93.796	Choloepus_hoffmanni
ENSSBOG00000033339	SMG5	94	78.905	ENSCPBG00000025848	SMG5	100	78.499	Chrysemys_picta_bellii
ENSSBOG00000033339	SMG5	93	34.778	ENSCING00000008706	-	99	34.600	Ciona_intestinalis
ENSSBOG00000033339	SMG5	100	93.898	ENSCANG00000029208	SMG5	100	93.898	Colobus_angolensis_palliatus
ENSSBOG00000033339	SMG5	100	92.338	ENSCGRG00001006336	Smg5	100	92.043	Cricetulus_griseus_chok1gshd
ENSSBOG00000033339	SMG5	98	92.354	ENSCGRG00000005111	Smg5	100	92.044	Cricetulus_griseus_crigri
ENSSBOG00000033339	SMG5	99	65.467	ENSCSEG00000014220	smg5	92	78.014	Cynoglossus_semilaevis
ENSSBOG00000033339	SMG5	99	60.819	ENSCVAG00000000529	smg5	99	61.516	Cyprinodon_variegatus
ENSSBOG00000033339	SMG5	100	91.929	ENSDNOG00000000051	SMG5	100	91.929	Dasypus_novemcinctus
ENSSBOG00000033339	SMG5	92	36.959	ENSDNOG00000039862	-	100	35.579	Dasypus_novemcinctus
ENSSBOG00000033339	SMG5	100	94.204	ENSDORG00000010382	Smg5	100	93.517	Dipodomys_ordii
ENSSBOG00000033339	SMG5	66	34.839	FBgn0019890	Smg5	62	34.839	Drosophila_melanogaster
ENSSBOG00000033339	SMG5	82	96.117	ENSETEG00000010336	SMG5	83	96.117	Echinops_telfairi
ENSSBOG00000033339	SMG5	90	46.709	ENSEBUG00000003739	smg5	98	46.779	Eptatretus_burgeri
ENSSBOG00000033339	SMG5	100	96.850	ENSEASG00005019122	SMG5	100	96.850	Equus_asinus_asinus
ENSSBOG00000033339	SMG5	100	96.850	ENSECAG00000001389	SMG5	100	96.850	Equus_caballus
ENSSBOG00000033339	SMG5	72	98.559	ENSEEUG00000012690	SMG5	73	98.559	Erinaceus_europaeus
ENSSBOG00000033339	SMG5	99	65.604	ENSELUG00000012585	smg5	99	65.230	Esox_lucius
ENSSBOG00000033339	SMG5	100	94.094	ENSFCAG00000011783	SMG5	100	93.314	Felis_catus
ENSSBOG00000033339	SMG5	58	82.137	ENSFALG00000001166	-	99	82.245	Ficedula_albicollis
ENSSBOG00000033339	SMG5	98	92.951	ENSFDAG00000017388	SMG5	100	92.850	Fukomys_damarensis
ENSSBOG00000033339	SMG5	97	62.437	ENSFHEG00000013939	smg5	95	68.476	Fundulus_heteroclitus
ENSSBOG00000033339	SMG5	99	61.791	ENSGMOG00000007310	smg5	92	76.606	Gadus_morhua
ENSSBOG00000033339	SMG5	99	78.206	ENSGALG00000029918	-	100	77.714	Gallus_gallus
ENSSBOG00000033339	SMG5	100	79.867	ENSGAGG00000016131	SMG5	100	79.392	Gopherus_agassizii
ENSSBOG00000033339	SMG5	100	98.425	ENSGGOG00000010932	SMG5	100	98.425	Gorilla_gorilla
ENSSBOG00000033339	SMG5	99	64.581	ENSHBUG00000008654	smg5	99	65.176	Haplochromis_burtoni
ENSSBOG00000033339	SMG5	100	92.633	ENSHGLG00000019152	SMG5	100	92.829	Heterocephalus_glaber_female
ENSSBOG00000033339	SMG5	90	93.100	ENSHGLG00100015948	SMG5	99	93.319	Heterocephalus_glaber_male
ENSSBOG00000033339	SMG5	86	73.594	ENSHCOG00000010229	smg5	83	78.571	Hippocampus_comes
ENSSBOG00000033339	SMG5	99	60.579	ENSIPUG00000006624	Smg5	99	62.261	Ictalurus_punctatus
ENSSBOG00000033339	SMG5	100	96.755	ENSSTOG00000001780	SMG5	100	96.755	Ictidomys_tridecemlineatus
ENSSBOG00000033339	SMG5	100	93.131	ENSJJAG00000022763	Smg5	100	92.934	Jaculus_jaculus
ENSSBOG00000033339	SMG5	50	59.341	ENSKMAG00000014586	smg5	99	61.067	Kryptolebias_marmoratus
ENSSBOG00000033339	SMG5	99	66.409	ENSLBEG00000002145	smg5	99	66.344	Labrus_bergylta
ENSSBOG00000033339	SMG5	100	65.205	ENSLACG00000010521	SMG5	100	65.014	Latimeria_chalumnae
ENSSBOG00000033339	SMG5	96	78.638	ENSLOCG00000008380	smg5	92	78.673	Lepisosteus_oculatus
ENSSBOG00000033339	SMG5	100	94.685	ENSLAFG00000006241	SMG5	100	94.685	Loxodonta_africana
ENSSBOG00000033339	SMG5	100	98.228	ENSMFAG00000045357	SMG5	100	98.228	Macaca_fascicularis
ENSSBOG00000033339	SMG5	100	98.130	ENSMMUG00000000090	SMG5	100	98.130	Macaca_mulatta
ENSSBOG00000033339	SMG5	100	98.130	ENSMNEG00000044425	SMG5	100	98.130	Macaca_nemestrina
ENSSBOG00000033339	SMG5	100	91.961	ENSMLEG00000041192	SMG5	100	91.961	Mandrillus_leucophaeus
ENSSBOG00000033339	SMG5	99	61.017	ENSMAMG00000010683	smg5	58	56.423	Mastacembelus_armatus
ENSSBOG00000033339	SMG5	63	58.709	ENSMZEG00005016543	smg5	100	59.125	Maylandia_zebra
ENSSBOG00000033339	SMG5	99	63.308	ENSMZEG00005015815	smg5	99	64.163	Maylandia_zebra
ENSSBOG00000033339	SMG5	55	44.930	ENSMAUG00000000043	-	96	44.174	Mesocricetus_auratus
ENSSBOG00000033339	SMG5	100	91.356	ENSMAUG00000010381	Smg5	100	91.159	Mesocricetus_auratus
ENSSBOG00000033339	SMG5	100	97.343	ENSMICG00000002257	SMG5	100	97.343	Microcebus_murinus
ENSSBOG00000033339	SMG5	100	91.373	ENSMOCG00000016590	Smg5	100	90.784	Microtus_ochrogaster
ENSSBOG00000033339	SMG5	99	59.216	ENSMMOG00000017199	smg5	99	59.748	Mola_mola
ENSSBOG00000033339	SMG5	78	37.531	ENSMODG00000010675	-	84	37.666	Monodelphis_domestica
ENSSBOG00000033339	SMG5	93	37.073	ENSMODG00000004532	-	83	37.940	Monodelphis_domestica
ENSSBOG00000033339	SMG5	87	90.315	ENSMODG00000016901	SMG5	98	90.766	Monodelphis_domestica
ENSSBOG00000033339	SMG5	80	38.173	ENSMODG00000004735	-	86	39.467	Monodelphis_domestica
ENSSBOG00000033339	SMG5	99	59.840	ENSMALG00000010375	smg5	99	59.698	Monopterus_albus
ENSSBOG00000033339	SMG5	100	92.141	MGP_CAROLIEiJ_G0025163	Smg5	100	98.883	Mus_caroli
ENSSBOG00000033339	SMG5	100	92.240	ENSMUSG00000001415	Smg5	99	98.883	Mus_musculus
ENSSBOG00000033339	SMG5	100	91.953	MGP_PahariEiJ_G0026606	Smg5	100	98.883	Mus_pahari
ENSSBOG00000033339	SMG5	100	92.043	MGP_SPRETEiJ_G0026104	Smg5	100	98.883	Mus_spretus
ENSSBOG00000033339	SMG5	94	92.842	ENSMPUG00000004546	SMG5	100	92.105	Mustela_putorius_furo
ENSSBOG00000033339	SMG5	100	95.597	ENSMLUG00000008518	SMG5	100	95.597	Myotis_lucifugus
ENSSBOG00000033339	SMG5	98	44.489	ENSNGAG00000012101	-	98	44.786	Nannospalax_galili
ENSSBOG00000033339	SMG5	100	93.510	ENSNGAG00000020706	Smg5	100	93.215	Nannospalax_galili
ENSSBOG00000033339	SMG5	97	63.444	ENSNBRG00000004332	smg5	98	64.193	Neolamprologus_brichardi
ENSSBOG00000033339	SMG5	100	97.933	ENSNLEG00000012439	SMG5	100	97.933	Nomascus_leucogenys
ENSSBOG00000033339	SMG5	100	88.102	ENSMEUG00000012834	SMG5	100	87.217	Notamacropus_eugenii
ENSSBOG00000033339	SMG5	100	94.291	ENSOPRG00000009152	SMG5	100	94.291	Ochotona_princeps
ENSSBOG00000033339	SMG5	100	95.276	ENSODEG00000012237	SMG5	100	95.276	Octodon_degus
ENSSBOG00000033339	SMG5	99	60.142	ENSONIG00000008632	smg5	92	78.588	Oreochromis_niloticus
ENSSBOG00000033339	SMG5	98	95.665	ENSOCUG00000012886	SMG5	100	95.665	Oryctolagus_cuniculus
ENSSBOG00000033339	SMG5	89	40.656	ENSOCUG00000023338	-	99	40.087	Oryctolagus_cuniculus
ENSSBOG00000033339	SMG5	50	59.116	ENSORLG00000016239	smg5	99	62.063	Oryzias_latipes
ENSSBOG00000033339	SMG5	99	65.005	ENSORLG00020013127	smg5	99	65.628	Oryzias_latipes_hni
ENSSBOG00000033339	SMG5	99	65.107	ENSORLG00015019014	smg5	99	65.825	Oryzias_latipes_hsok
ENSSBOG00000033339	SMG5	82	59.764	ENSOMEG00000021330	smg5	92	60.921	Oryzias_melastigma
ENSSBOG00000033339	SMG5	100	95.079	ENSOGAG00000004966	SMG5	100	95.079	Otolemur_garnettii
ENSSBOG00000033339	SMG5	99	44.770	ENSOARG00000011963	-	99	43.665	Ovis_aries
ENSSBOG00000033339	SMG5	100	95.866	ENSOARG00000005778	SMG5	100	95.866	Ovis_aries
ENSSBOG00000033339	SMG5	100	97.933	ENSPPAG00000011996	SMG5	100	97.933	Pan_paniscus
ENSSBOG00000033339	SMG5	98	93.952	ENSPPRG00000011901	SMG5	100	93.145	Panthera_pardus
ENSSBOG00000033339	SMG5	99	85.771	ENSPTIG00000007892	SMG5	98	85.628	Panthera_tigris_altaica
ENSSBOG00000033339	SMG5	100	98.130	ENSPTRG00000023925	SMG5	100	98.130	Pan_troglodytes
ENSSBOG00000033339	SMG5	100	98.130	ENSPTRG00000049282	-	100	98.130	Pan_troglodytes
ENSSBOG00000033339	SMG5	100	98.327	ENSPANG00000011201	SMG5	100	98.327	Papio_anubis
ENSSBOG00000033339	SMG5	99	65.637	ENSPKIG00000009402	smg5	99	65.856	Paramormyrops_kingsleyae
ENSSBOG00000033339	SMG5	98	80.773	ENSPSIG00000015198	SMG5	100	80.575	Pelodiscus_sinensis
ENSSBOG00000033339	SMG5	99	60.514	ENSPMGG00000010465	smg5	99	60.813	Periophthalmus_magnuspinnatus
ENSSBOG00000033339	SMG5	100	92.534	ENSPEMG00000001819	Smg5	100	92.240	Peromyscus_maniculatus_bairdii
ENSSBOG00000033339	SMG5	56	45.951	ENSPEMG00000010022	-	95	45.078	Peromyscus_maniculatus_bairdii
ENSSBOG00000033339	SMG5	99	49.710	ENSPMAG00000000410	smg5	100	49.953	Petromyzon_marinus
ENSSBOG00000033339	SMG5	100	89.587	ENSPCIG00000018938	SMG5	100	89.980	Phascolarctos_cinereus
ENSSBOG00000033339	SMG5	50	60.595	ENSPFOG00000010191	smg5	99	62.097	Poecilia_formosa
ENSSBOG00000033339	SMG5	50	60.111	ENSPLAG00000009332	smg5	99	62.186	Poecilia_latipinna
ENSSBOG00000033339	SMG5	99	65.835	ENSPMEG00000014105	smg5	99	65.583	Poecilia_mexicana
ENSSBOG00000033339	SMG5	93	69.655	ENSPREG00000017713	smg5	99	62.186	Poecilia_reticulata
ENSSBOG00000033339	SMG5	100	98.425	ENSPPYG00000000723	SMG5	100	98.425	Pongo_abelii
ENSSBOG00000033339	SMG5	75	96.133	ENSPCAG00000008412	SMG5	81	96.133	Procavia_capensis
ENSSBOG00000033339	SMG5	100	97.441	ENSPCOG00000004741	SMG5	100	97.441	Propithecus_coquereli
ENSSBOG00000033339	SMG5	100	85.925	ENSPVAG00000016748	SMG5	100	85.925	Pteropus_vampyrus
ENSSBOG00000033339	SMG5	99	59.614	ENSPNYG00000013397	smg5	99	61.027	Pundamilia_nyererei
ENSSBOG00000033339	SMG5	100	92.141	ENSRNOG00000019590	Smg5	100	91.847	Rattus_norvegicus
ENSSBOG00000033339	SMG5	100	98.031	ENSRBIG00000027428	SMG5	100	98.031	Rhinopithecus_bieti
ENSSBOG00000033339	SMG5	100	97.933	ENSRROG00000030035	SMG5	100	97.933	Rhinopithecus_roxellana
ENSSBOG00000033339	SMG5	99	33.751	ENSSHAG00000009572	-	99	32.336	Sarcophilus_harrisii
ENSSBOG00000033339	SMG5	64	39.766	ENSSHAG00000000935	-	92	40.854	Sarcophilus_harrisii
ENSSBOG00000033339	SMG5	88	40.420	ENSSHAG00000000561	-	87	40.420	Sarcophilus_harrisii
ENSSBOG00000033339	SMG5	98	89.089	ENSSHAG00000014163	SMG5	100	89.489	Sarcophilus_harrisii
ENSSBOG00000033339	SMG5	99	65.637	ENSSFOG00015024175	smg5	99	66.244	Scleropages_formosus
ENSSBOG00000033339	SMG5	99	60.993	ENSSMAG00000013059	smg5	99	62.422	Scophthalmus_maximus
ENSSBOG00000033339	SMG5	50	60.145	ENSSDUG00000007122	smg5	92	77.103	Seriola_dumerili
ENSSBOG00000033339	SMG5	97	60.370	ENSSLDG00000011418	smg5	92	77.830	Seriola_lalandi_dorsalis
ENSSBOG00000033339	SMG5	90	81.461	ENSSARG00000012484	SMG5	100	81.461	Sorex_araneus
ENSSBOG00000033339	SMG5	94	77.273	ENSSPUG00000002260	SMG5	100	76.364	Sphenodon_punctatus
ENSSBOG00000033339	SMG5	91	76.815	ENSSPAG00000014266	smg5	99	64.813	Stegastes_partitus
ENSSBOG00000033339	SMG5	100	97.441	ENSSSCG00000006490	-	100	97.441	Sus_scrofa
ENSSBOG00000033339	SMG5	99	75.369	ENSSSCG00000039308	-	100	75.567	Sus_scrofa
ENSSBOG00000033339	SMG5	53	36.071	ENSSSCG00000037182	-	85	37.905	Sus_scrofa
ENSSBOG00000033339	SMG5	99	80.712	ENSTGUG00000003748	-	100	80.469	Taeniopygia_guttata
ENSSBOG00000033339	SMG5	99	65.058	ENSTRUG00000012580	smg5	99	64.575	Takifugu_rubripes
ENSSBOG00000033339	SMG5	99	65.276	ENSTNIG00000010303	smg5	99	65.146	Tetraodon_nigroviridis
ENSSBOG00000033339	SMG5	60	100.000	ENSTBEG00000002777	SMG5	60	100.000	Tupaia_belangeri
ENSSBOG00000033339	SMG5	100	91.831	ENSTTRG00000001401	SMG5	100	91.831	Tursiops_truncatus
ENSSBOG00000033339	SMG5	100	93.602	ENSUAMG00000013721	SMG5	100	92.913	Ursus_americanus
ENSSBOG00000033339	SMG5	98	89.146	ENSUMAG00000018041	SMG5	97	88.442	Ursus_maritimus
ENSSBOG00000033339	SMG5	98	86.882	ENSVPAG00000009446	SMG5	99	86.882	Vicugna_pacos
ENSSBOG00000033339	SMG5	100	94.488	ENSVVUG00000005887	SMG5	100	93.799	Vulpes_vulpes
ENSSBOG00000033339	SMG5	77	66.330	ENSXETG00000033791	SMG5	99	65.574	Xenopus_tropicalis
ENSSBOG00000033339	SMG5	99	65.927	ENSXMAG00000013499	smg5	99	65.769	Xiphophorus_maculatus