EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSBOG00000034899 (Gene tree)
Gene ID: 101029572
Gene Symbol: LSM7
Alias: YNL147W
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Saimiri_boliviensis_boliviensis
Status: putative
Strand: Minus strand
Length: 5231 bases
Position: chrJH378135.1:611085-616315
Accession: 20470
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSBOP00000037604	LSM	PF01423.22	5.4e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSBOT00000054547	LSM7-201	601	XM_010339262	ENSSBOP00000037604	103 (aa)	XP_010337564	A0A2K6V0C6

Gene Model

Click here to download ENSSBOG00000034899's gene model file

Pathways

Pathway ID	Pathway Name	Source
sbq03018	RNA degradation	KEGG
sbq03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSBOG00000034899's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSBOG00000034899	LSM7	57	33.898	ENSSBOG00000028922	-	76	33.898
ENSSBOG00000034899	LSM7	69	36.620	ENSSBOG00000023307	SNRPG	87	38.806
ENSSBOG00000034899	LSM7	69	38.028	ENSSBOG00000004446	-	65	38.028
ENSSBOG00000034899	LSM7	69	35.211	ENSSBOG00000026763	-	84	35.211
ENSSBOG00000034899	LSM7	72	35.526	ENSSBOG00000023223	LSM8	73	35.526
ENSSBOG00000034899	LSM7	66	33.824	ENSSBOG00000022826	-	65	33.824
ENSSBOG00000034899	LSM7	68	38.571	ENSSBOG00000020739	-	81	38.571
ENSSBOG00000034899	LSM7	69	36.620	ENSSBOG00000022793	-	84	36.620

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSBOG00000034899	LSM7	100	100.000	ENSG00000130332	LSM7	100	100.000	Homo_sapiens
ENSSBOG00000034899	LSM7	91	95.745	ENSAPOG00000015573	lsm7	81	95.745	Acanthochromis_polyacanthus
ENSSBOG00000034899	LSM7	100	97.087	ENSAMEG00000005484	LSM7	100	97.087	Ailuropoda_melanoleuca
ENSSBOG00000034899	LSM7	95	94.898	ENSACIG00000006498	lsm7	78	94.898	Amphilophus_citrinellus
ENSSBOG00000034899	LSM7	98	95.050	ENSAOCG00000001077	lsm7	92	95.050	Amphiprion_ocellaris
ENSSBOG00000034899	LSM7	100	93.204	ENSAPEG00000024447	lsm7	92	95.050	Amphiprion_percula
ENSSBOG00000034899	LSM7	100	95.146	ENSAPEG00000000694	lsm7	100	95.146	Amphiprion_percula
ENSSBOG00000034899	LSM7	100	95.146	ENSATEG00000008557	lsm7	100	95.146	Anabas_testudineus
ENSSBOG00000034899	LSM7	100	100.000	ENSANAG00000037196	-	100	100.000	Aotus_nancymaae
ENSSBOG00000034899	LSM7	100	91.262	ENSANAG00000022222	-	100	91.262	Aotus_nancymaae
ENSSBOG00000034899	LSM7	100	94.175	ENSACLG00000021021	lsm7	100	94.175	Astatotilapia_calliptera
ENSSBOG00000034899	LSM7	100	95.146	ENSAMXG00000037622	lsm7	100	95.146	Astyanax_mexicanus
ENSSBOG00000034899	LSM7	100	100.000	ENSBTAG00000004521	LSM7	100	100.000	Bos_taurus
ENSSBOG00000034899	LSM7	97	57.000	WBGene00003081	lsm-7	96	57.000	Caenorhabditis_elegans
ENSSBOG00000034899	LSM7	54	100.000	ENSCJAG00000039713	-	68	100.000	Callithrix_jacchus
ENSSBOG00000034899	LSM7	98	99.010	ENSCAFG00000019409	LSM7	98	99.010	Canis_familiaris
ENSSBOG00000034899	LSM7	98	99.010	ENSCAFG00020018168	LSM7	74	99.010	Canis_lupus_dingo
ENSSBOG00000034899	LSM7	100	98.058	ENSCHIG00000023663	LSM7	100	98.058	Capra_hircus
ENSSBOG00000034899	LSM7	69	100.000	ENSCAPG00000014534	LSM7	100	100.000	Cavia_aperea
ENSSBOG00000034899	LSM7	100	100.000	ENSCPOG00000014025	LSM7	100	100.000	Cavia_porcellus
ENSSBOG00000034899	LSM7	98	100.000	ENSCCAG00000035456	LSM7	99	100.000	Cebus_capucinus
ENSSBOG00000034899	LSM7	100	100.000	ENSCATG00000023543	LSM7	100	100.000	Cercocebus_atys
ENSSBOG00000034899	LSM7	100	100.000	ENSCLAG00000011635	LSM7	100	100.000	Chinchilla_lanigera
ENSSBOG00000034899	LSM7	100	100.000	ENSCSAG00000011599	LSM7	100	100.000	Chlorocebus_sabaeus
ENSSBOG00000034899	LSM7	70	94.444	ENSCPBG00000021317	LSM7	77	94.444	Chrysemys_picta_bellii
ENSSBOG00000034899	LSM7	93	80.208	ENSCING00000022134	-	97	80.208	Ciona_intestinalis
ENSSBOG00000034899	LSM7	100	100.000	ENSCANG00000035525	LSM7	100	100.000	Colobus_angolensis_palliatus
ENSSBOG00000034899	LSM7	87	88.889	ENSCGRG00001016005	-	92	88.889	Cricetulus_griseus_chok1gshd
ENSSBOG00000034899	LSM7	100	99.029	ENSCGRG00001000807	-	100	99.029	Cricetulus_griseus_chok1gshd
ENSSBOG00000034899	LSM7	98	99.010	ENSCGRG00000014355	-	97	99.010	Cricetulus_griseus_crigri
ENSSBOG00000034899	LSM7	87	88.889	ENSCGRG00000006821	-	92	88.889	Cricetulus_griseus_crigri
ENSSBOG00000034899	LSM7	98	95.050	ENSCSEG00000014900	lsm7	86	95.050	Cynoglossus_semilaevis
ENSSBOG00000034899	LSM7	98	96.040	ENSCVAG00000021091	lsm7	94	96.040	Cyprinodon_variegatus
ENSSBOG00000034899	LSM7	100	95.146	ENSDARG00000058328	lsm7	100	95.146	Danio_rerio
ENSSBOG00000034899	LSM7	99	98.039	ENSDORG00000024460	Lsm7	100	98.039	Dipodomys_ordii
ENSSBOG00000034899	LSM7	94	76.531	FBgn0261068	LSm7	89	76.531	Drosophila_melanogaster
ENSSBOG00000034899	LSM7	98	97.030	ENSETEG00000012788	LSM7	99	97.030	Echinops_telfairi
ENSSBOG00000034899	LSM7	100	84.466	ENSEBUG00000016992	lsm7	99	84.466	Eptatretus_burgeri
ENSSBOG00000034899	LSM7	81	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSSBOG00000034899	LSM7	100	96.117	ENSECAG00000001440	LSM7	66	96.117	Equus_caballus
ENSSBOG00000034899	LSM7	100	99.029	ENSFCAG00000003445	LSM7	100	99.029	Felis_catus
ENSSBOG00000034899	LSM7	98	97.030	ENSFALG00000011912	LSM7	100	97.030	Ficedula_albicollis
ENSSBOG00000034899	LSM7	93	100.000	ENSFDAG00000007661	LSM7	100	100.000	Fukomys_damarensis
ENSSBOG00000034899	LSM7	98	96.040	ENSFHEG00000006349	lsm7	90	96.040	Fundulus_heteroclitus
ENSSBOG00000034899	LSM7	100	91.262	ENSGMOG00000013320	lsm7	100	91.262	Gadus_morhua
ENSSBOG00000034899	LSM7	100	96.117	ENSGAFG00000013902	lsm7	100	96.117	Gambusia_affinis
ENSSBOG00000034899	LSM7	100	92.233	ENSGACG00000010390	lsm7	100	92.233	Gasterosteus_aculeatus
ENSSBOG00000034899	LSM7	100	100.000	ENSGGOG00000010172	LSM7	100	100.000	Gorilla_gorilla
ENSSBOG00000034899	LSM7	100	94.175	ENSHBUG00000004616	lsm7	100	94.175	Haplochromis_burtoni
ENSSBOG00000034899	LSM7	100	100.000	ENSHGLG00000010587	LSM7	100	100.000	Heterocephalus_glaber_female
ENSSBOG00000034899	LSM7	100	100.000	ENSHGLG00100000852	LSM7	100	100.000	Heterocephalus_glaber_male
ENSSBOG00000034899	LSM7	98	94.059	ENSHCOG00000020252	lsm7	100	94.059	Hippocampus_comes
ENSSBOG00000034899	LSM7	100	95.146	ENSIPUG00000024724	lsm7	100	95.146	Ictalurus_punctatus
ENSSBOG00000034899	LSM7	98	100.000	ENSSTOG00000028372	LSM7	99	100.000	Ictidomys_tridecemlineatus
ENSSBOG00000034899	LSM7	98	98.020	ENSJJAG00000001936	Lsm7	98	98.020	Jaculus_jaculus
ENSSBOG00000034899	LSM7	100	96.117	ENSKMAG00000022151	lsm7	100	96.117	Kryptolebias_marmoratus
ENSSBOG00000034899	LSM7	100	94.175	ENSLBEG00000005203	lsm7	100	94.175	Labrus_bergylta
ENSSBOG00000034899	LSM7	100	97.087	ENSLACG00000015700	LSM7	100	97.087	Latimeria_chalumnae
ENSSBOG00000034899	LSM7	100	96.117	ENSLOCG00000004356	lsm7	100	96.117	Lepisosteus_oculatus
ENSSBOG00000034899	LSM7	98	100.000	ENSLAFG00000029302	LSM7	98	100.000	Loxodonta_africana
ENSSBOG00000034899	LSM7	100	100.000	ENSMFAG00000044572	LSM7	100	100.000	Macaca_fascicularis
ENSSBOG00000034899	LSM7	100	100.000	ENSMMUG00000000452	LSM7	100	100.000	Macaca_mulatta
ENSSBOG00000034899	LSM7	100	100.000	ENSMNEG00000004393	LSM7	100	100.000	Macaca_nemestrina
ENSSBOG00000034899	LSM7	100	100.000	ENSMLEG00000030852	LSM7	100	100.000	Mandrillus_leucophaeus
ENSSBOG00000034899	LSM7	100	94.175	ENSMAMG00000005410	lsm7	100	94.175	Mastacembelus_armatus
ENSSBOG00000034899	LSM7	100	94.175	ENSMZEG00005028055	lsm7	100	94.175	Maylandia_zebra
ENSSBOG00000034899	LSM7	100	98.058	ENSMGAG00000000750	LSM7	89	98.058	Meleagris_gallopavo
ENSSBOG00000034899	LSM7	100	99.029	ENSMAUG00000009276	Lsm7	100	99.029	Mesocricetus_auratus
ENSSBOG00000034899	LSM7	100	100.000	ENSMICG00000028619	-	100	100.000	Microcebus_murinus
ENSSBOG00000034899	LSM7	100	99.029	ENSMICG00000009988	-	100	99.029	Microcebus_murinus
ENSSBOG00000034899	LSM7	100	99.029	ENSMOCG00000016925	Lsm7	100	99.029	Microtus_ochrogaster
ENSSBOG00000034899	LSM7	100	95.146	ENSMMOG00000019645	lsm7	98	95.146	Mola_mola
ENSSBOG00000034899	LSM7	100	99.029	ENSMODG00000004722	LSM7	100	99.029	Monodelphis_domestica
ENSSBOG00000034899	LSM7	100	94.175	ENSMALG00000014511	lsm7	79	94.175	Monopterus_albus
ENSSBOG00000034899	LSM7	100	97.087	MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	Mus_caroli
ENSSBOG00000034899	LSM7	100	97.087	ENSMUSG00000035215	Lsm7	100	97.087	Mus_musculus
ENSSBOG00000034899	LSM7	100	97.087	MGP_PahariEiJ_G0031020	Lsm7	100	97.087	Mus_pahari
ENSSBOG00000034899	LSM7	100	97.087	MGP_SPRETEiJ_G0016425	Lsm7	100	97.087	Mus_spretus
ENSSBOG00000034899	LSM7	100	97.087	ENSMLUG00000013097	-	100	97.087	Myotis_lucifugus
ENSSBOG00000034899	LSM7	100	92.233	ENSMLUG00000024002	-	94	92.233	Myotis_lucifugus
ENSSBOG00000034899	LSM7	100	98.058	ENSNGAG00000021637	Lsm7	100	98.058	Nannospalax_galili
ENSSBOG00000034899	LSM7	91	94.681	ENSNBRG00000001237	-	82	92.233	Neolamprologus_brichardi
ENSSBOG00000034899	LSM7	98	94.059	ENSNBRG00000015770	lsm7	87	94.059	Neolamprologus_brichardi
ENSSBOG00000034899	LSM7	100	100.000	ENSNLEG00000002265	LSM7	100	100.000	Nomascus_leucogenys
ENSSBOG00000034899	LSM7	100	100.000	ENSODEG00000013590	-	100	100.000	Octodon_degus
ENSSBOG00000034899	LSM7	100	93.204	ENSODEG00000018769	-	100	93.204	Octodon_degus
ENSSBOG00000034899	LSM7	100	79.612	ENSODEG00000008190	-	100	79.612	Octodon_degus
ENSSBOG00000034899	LSM7	100	94.175	ENSONIG00000001801	lsm7	89	94.175	Oreochromis_niloticus
ENSSBOG00000034899	LSM7	100	95.146	ENSORLG00000023951	lsm7	100	95.146	Oryzias_latipes
ENSSBOG00000034899	LSM7	100	95.146	ENSORLG00020022226	lsm7	100	95.146	Oryzias_latipes_hni
ENSSBOG00000034899	LSM7	100	93.204	ENSORLG00015020044	lsm7	94	95.050	Oryzias_latipes_hsok
ENSSBOG00000034899	LSM7	100	95.146	ENSOMEG00000012806	lsm7	100	95.146	Oryzias_melastigma
ENSSBOG00000034899	LSM7	100	88.350	ENSOGAG00000024373	-	100	88.350	Otolemur_garnettii
ENSSBOG00000034899	LSM7	98	98.020	ENSOGAG00000000144	-	99	98.020	Otolemur_garnettii
ENSSBOG00000034899	LSM7	100	98.058	ENSOARG00000014013	LSM7	100	98.058	Ovis_aries
ENSSBOG00000034899	LSM7	100	100.000	ENSPPAG00000026500	LSM7	100	100.000	Pan_paniscus
ENSSBOG00000034899	LSM7	100	99.029	ENSPPRG00000008624	LSM7	100	99.029	Panthera_pardus
ENSSBOG00000034899	LSM7	98	99.010	ENSPTIG00000016252	LSM7	98	99.010	Panthera_tigris_altaica
ENSSBOG00000034899	LSM7	100	100.000	ENSPTRG00000010233	LSM7	100	100.000	Pan_troglodytes
ENSSBOG00000034899	LSM7	100	100.000	ENSPANG00000020668	LSM7	100	100.000	Papio_anubis
ENSSBOG00000034899	LSM7	100	97.087	ENSPKIG00000011325	lsm7	100	97.087	Paramormyrops_kingsleyae
ENSSBOG00000034899	LSM7	98	98.020	ENSPSIG00000017149	LSM7	89	98.020	Pelodiscus_sinensis
ENSSBOG00000034899	LSM7	100	95.146	ENSPMGG00000006498	lsm7	100	95.146	Periophthalmus_magnuspinnatus
ENSSBOG00000034899	LSM7	100	99.029	ENSPCIG00000030454	LSM7	100	99.029	Phascolarctos_cinereus
ENSSBOG00000034899	LSM7	100	93.204	ENSPFOG00000012467	lsm7	91	93.204	Poecilia_formosa
ENSSBOG00000034899	LSM7	100	93.204	ENSPLAG00000000252	lsm7	94	94.118	Poecilia_latipinna
ENSSBOG00000034899	LSM7	100	93.204	ENSPMEG00000000587	lsm7	94	94.118	Poecilia_mexicana
ENSSBOG00000034899	LSM7	78	76.543	ENSPREG00000016718	lsm7	65	76.543	Poecilia_reticulata
ENSSBOG00000034899	LSM7	71	97.260	ENSPPYG00000009348	-	50	97.260	Pongo_abelii
ENSSBOG00000034899	LSM7	100	100.000	ENSPCOG00000017177	LSM7	100	100.000	Propithecus_coquereli
ENSSBOG00000034899	LSM7	100	94.175	ENSPNYG00000006938	lsm7	100	94.175	Pundamilia_nyererei
ENSSBOG00000034899	LSM7	100	95.146	ENSPNAG00000010141	lsm7	100	95.146	Pygocentrus_nattereri
ENSSBOG00000034899	LSM7	100	98.058	ENSRNOG00000019552	Lsm7	100	98.058	Rattus_norvegicus
ENSSBOG00000034899	LSM7	100	100.000	ENSRBIG00000035978	LSM7	100	100.000	Rhinopithecus_bieti
ENSSBOG00000034899	LSM7	100	100.000	ENSRROG00000034044	LSM7	100	100.000	Rhinopithecus_roxellana
ENSSBOG00000034899	LSM7	86	47.826	YNL147W	-	80	47.826	Saccharomyces_cerevisiae
ENSSBOG00000034899	LSM7	100	95.146	ENSSFOG00015006728	lsm7	100	95.146	Scleropages_formosus
ENSSBOG00000034899	LSM7	100	93.204	ENSSMAG00000004195	lsm7	93	95.050	Scophthalmus_maximus
ENSSBOG00000034899	LSM7	100	95.146	ENSSDUG00000001863	lsm7	100	95.146	Seriola_dumerili
ENSSBOG00000034899	LSM7	100	95.146	ENSSLDG00000016339	lsm7	100	95.146	Seriola_lalandi_dorsalis
ENSSBOG00000034899	LSM7	100	95.146	ENSSPAG00000015221	lsm7	100	95.146	Stegastes_partitus
ENSSBOG00000034899	LSM7	98	100.000	ENSSSCG00000013463	LSM7	99	100.000	Sus_scrofa
ENSSBOG00000034899	LSM7	98	97.030	ENSTGUG00000000067	LSM7	100	97.030	Taeniopygia_guttata
ENSSBOG00000034899	LSM7	100	95.146	ENSTRUG00000022913	lsm7	100	95.146	Takifugu_rubripes
ENSSBOG00000034899	LSM7	100	95.146	ENSTNIG00000015525	lsm7	100	95.146	Tetraodon_nigroviridis
ENSSBOG00000034899	LSM7	68	87.143	ENSTBEG00000016602	LSM7	100	87.143	Tupaia_belangeri
ENSSBOG00000034899	LSM7	100	97.087	ENSUAMG00000000912	LSM7	86	97.087	Ursus_americanus
ENSSBOG00000034899	LSM7	98	99.010	ENSUMAG00000006556	LSM7	79	99.010	Ursus_maritimus
ENSSBOG00000034899	LSM7	69	98.592	ENSVVUG00000002640	LSM7	65	98.592	Vulpes_vulpes
ENSSBOG00000034899	LSM7	98	95.050	ENSXETG00000022166	lsm7	100	95.050	Xenopus_tropicalis
ENSSBOG00000034899	LSM7	99	95.098	ENSXCOG00000002572	lsm7	100	95.098	Xiphophorus_couchianus
ENSSBOG00000034899	LSM7	100	96.117	ENSXMAG00000018630	lsm7	100	96.117	Xiphophorus_maculatus