EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000000268 (Gene tree)
Gene ID: 111234427
Gene Symbol: larp1
Alias: wu:fb92d03|wu:fd15e07
Full Name: La ribonucleoprotein domain family member 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 54764 bases
Position: chrBDQW01000449.1:2968982-3023745
Accession: 111234427
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000000352	La	PF05383.17	6.7e-21	1	1
ENSSDUP00000000338	La	PF05383.17	7.6e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000000389	-	2526	-	ENSSDUP00000000352	841 (aa)	-	-
ENSSDUT00000000375	-	5121	XM_022762514	ENSSDUP00000000338	1110 (aa)	XP_022618235	UPI000BBE97DF

Gene Model

Click here to download ENSSDUG00000000268's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000000268's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000000268	larp1	94	59.367	ENSSDUG00000004182	larp1b	92	52.754

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000000268	larp1	95	70.513	ENSG00000155506	LARP1	90	80.606	Homo_sapiens
ENSSDUG00000000268	larp1	87	96.380	ENSAPOG00000020685	larp1	99	96.380	Acanthochromis_polyacanthus
ENSSDUG00000000268	larp1	95	70.732	ENSAMEG00000016673	LARP1	99	67.807	Ailuropoda_melanoleuca
ENSSDUG00000000268	larp1	99	84.180	ENSACIG00000012994	larp1	100	80.018	Amphilophus_citrinellus
ENSSDUG00000000268	larp1	94	91.432	ENSAOCG00000007792	larp1	100	94.971	Amphiprion_ocellaris
ENSSDUG00000000268	larp1	100	92.523	ENSAPEG00000022246	larp1	100	92.342	Amphiprion_percula
ENSSDUG00000000268	larp1	98	91.249	ENSATEG00000013523	larp1	100	92.287	Anabas_testudineus
ENSSDUG00000000268	larp1	85	78.984	ENSAPLG00000007559	LARP1	99	71.444	Anas_platyrhynchos
ENSSDUG00000000268	larp1	97	70.662	ENSACAG00000004071	LARP1	97	71.667	Anolis_carolinensis
ENSSDUG00000000268	larp1	95	70.636	ENSANAG00000029949	LARP1	99	64.859	Aotus_nancymaae
ENSSDUG00000000268	larp1	100	91.487	ENSACLG00000015256	larp1	99	93.699	Astatotilapia_calliptera
ENSSDUG00000000268	larp1	95	80.357	ENSAMXG00000000859	larp1	98	76.230	Astyanax_mexicanus
ENSSDUG00000000268	larp1	94	71.244	ENSBTAG00000008443	LARP1	99	63.301	Bos_taurus
ENSSDUG00000000268	larp1	95	70.636	ENSCJAG00000004454	LARP1	99	63.149	Callithrix_jacchus
ENSSDUG00000000268	larp1	95	70.383	ENSCAFG00000017639	LARP1	99	67.807	Canis_familiaris
ENSSDUG00000000268	larp1	95	70.383	ENSCAFG00020023860	LARP1	98	70.419	Canis_lupus_dingo
ENSSDUG00000000268	larp1	94	70.892	ENSCHIG00000014414	LARP1	99	61.491	Capra_hircus
ENSSDUG00000000268	larp1	97	69.467	ENSTSYG00000013732	LARP1	98	65.253	Carlito_syrichta
ENSSDUG00000000268	larp1	90	69.782	ENSCAPG00000013865	LARP1	83	69.539	Cavia_aperea
ENSSDUG00000000268	larp1	95	71.065	ENSCPOG00000003377	LARP1	99	67.540	Cavia_porcellus
ENSSDUG00000000268	larp1	95	70.636	ENSCCAG00000025201	LARP1	99	62.793	Cebus_capucinus
ENSSDUG00000000268	larp1	94	70.892	ENSCATG00000030675	LARP1	99	61.174	Cercocebus_atys
ENSSDUG00000000268	larp1	97	70.349	ENSCLAG00000012755	LARP1	99	66.062	Chinchilla_lanigera
ENSSDUG00000000268	larp1	94	69.963	ENSCSAG00000010800	LARP1	98	67.553	Chlorocebus_sabaeus
ENSSDUG00000000268	larp1	83	65.120	ENSCHOG00000012716	LARP1	91	65.390	Choloepus_hoffmanni
ENSSDUG00000000268	larp1	94	74.880	ENSCPBG00000002173	LARP1	92	71.708	Chrysemys_picta_bellii
ENSSDUG00000000268	larp1	94	71.028	ENSCANG00000037418	LARP1	92	67.339	Colobus_angolensis_palliatus
ENSSDUG00000000268	larp1	97	69.752	ENSCGRG00001016913	Larp1	99	63.822	Cricetulus_griseus_chok1gshd
ENSSDUG00000000268	larp1	84	74.722	ENSCGRG00000009916	Larp1	99	65.094	Cricetulus_griseus_crigri
ENSSDUG00000000268	larp1	100	89.398	ENSCSEG00000016431	larp1	100	89.497	Cynoglossus_semilaevis
ENSSDUG00000000268	larp1	98	85.962	ENSCVAG00000022687	larp1	100	86.953	Cyprinodon_variegatus
ENSSDUG00000000268	larp1	98	73.410	ENSDARG00000101722	larp1	96	71.713	Danio_rerio
ENSSDUG00000000268	larp1	97	69.875	ENSDNOG00000012073	LARP1	99	62.687	Dasypus_novemcinctus
ENSSDUG00000000268	larp1	97	67.874	ENSDORG00000002897	Larp1	97	64.783	Dipodomys_ordii
ENSSDUG00000000268	larp1	90	70.402	ENSETEG00000020251	LARP1	100	68.865	Echinops_telfairi
ENSSDUG00000000268	larp1	95	71.817	ENSEASG00005001070	LARP1	99	62.982	Equus_asinus_asinus
ENSSDUG00000000268	larp1	95	71.817	ENSECAG00000017002	LARP1	79	63.070	Equus_caballus
ENSSDUG00000000268	larp1	94	67.018	ENSEEUG00000001065	LARP1	99	65.088	Erinaceus_europaeus
ENSSDUG00000000268	larp1	99	78.304	ENSELUG00000019403	larp1	99	78.203	Esox_lucius
ENSSDUG00000000268	larp1	95	71.163	ENSFCAG00000000592	LARP1	99	63.103	Felis_catus
ENSSDUG00000000268	larp1	94	76.190	ENSFALG00000008335	LARP1	99	71.529	Ficedula_albicollis
ENSSDUG00000000268	larp1	94	70.930	ENSFDAG00000021125	LARP1	99	67.339	Fukomys_damarensis
ENSSDUG00000000268	larp1	64	77.670	ENSFHEG00000020307	larp1	97	77.254	Fundulus_heteroclitus
ENSSDUG00000000268	larp1	98	71.477	ENSGALG00000040109	LARP1	99	67.147	Gallus_gallus
ENSSDUG00000000268	larp1	94	74.522	ENSGAGG00000025113	LARP1	95	74.439	Gopherus_agassizii
ENSSDUG00000000268	larp1	95	70.513	ENSGGOG00000006048	LARP1	94	66.369	Gorilla_gorilla
ENSSDUG00000000268	larp1	100	91.487	ENSHBUG00000020762	larp1	99	93.598	Haplochromis_burtoni
ENSSDUG00000000268	larp1	97	68.954	ENSHGLG00000006267	LARP1	99	62.301	Heterocephalus_glaber_female
ENSSDUG00000000268	larp1	95	60.073	ENSHGLG00100003395	-	90	57.483	Heterocephalus_glaber_male
ENSSDUG00000000268	larp1	91	75.223	ENSHGLG00100014230	-	99	67.170	Heterocephalus_glaber_male
ENSSDUG00000000268	larp1	88	94.660	ENSHCOG00000010786	larp1	99	94.660	Hippocampus_comes
ENSSDUG00000000268	larp1	95	74.201	ENSIPUG00000019105	Larp1	96	75.176	Ictalurus_punctatus
ENSSDUG00000000268	larp1	94	69.675	ENSSTOG00000005678	LARP1	98	65.288	Ictidomys_tridecemlineatus
ENSSDUG00000000268	larp1	95	64.808	ENSJJAG00000016950	Larp1	99	60.197	Jaculus_jaculus
ENSSDUG00000000268	larp1	100	88.140	ENSKMAG00000018468	larp1	99	91.057	Kryptolebias_marmoratus
ENSSDUG00000000268	larp1	98	89.010	ENSLBEG00000027172	larp1	100	88.909	Labrus_bergylta
ENSSDUG00000000268	larp1	91	80.470	ENSLOCG00000012457	larp1	99	75.670	Lepisosteus_oculatus
ENSSDUG00000000268	larp1	97	68.475	ENSLAFG00000008991	LARP1	99	62.301	Loxodonta_africana
ENSSDUG00000000268	larp1	94	70.892	ENSMFAG00000031651	LARP1	92	67.339	Macaca_fascicularis
ENSSDUG00000000268	larp1	94	69.841	ENSMMUG00000009411	LARP1	99	65.116	Macaca_mulatta
ENSSDUG00000000268	larp1	94	70.892	ENSMNEG00000039294	LARP1	98	69.912	Macaca_nemestrina
ENSSDUG00000000268	larp1	94	70.892	ENSMLEG00000035142	LARP1	92	67.440	Mandrillus_leucophaeus
ENSSDUG00000000268	larp1	100	91.097	ENSMAMG00000021788	larp1	100	90.917	Mastacembelus_armatus
ENSSDUG00000000268	larp1	100	91.487	ENSMZEG00005009345	larp1	99	93.699	Maylandia_zebra
ENSSDUG00000000268	larp1	98	71.950	ENSMGAG00000005696	LARP1	99	68.458	Meleagris_gallopavo
ENSSDUG00000000268	larp1	97	69.639	ENSMAUG00000001385	Larp1	99	63.556	Mesocricetus_auratus
ENSSDUG00000000268	larp1	94	72.354	ENSMICG00000000837	LARP1	98	70.286	Microcebus_murinus
ENSSDUG00000000268	larp1	97	69.752	ENSMOCG00000008920	Larp1	99	63.484	Microtus_ochrogaster
ENSSDUG00000000268	larp1	92	72.795	ENSMMOG00000013364	larp1	99	68.802	Mola_mola
ENSSDUG00000000268	larp1	97	70.876	ENSMODG00000008663	LARP1	98	68.586	Monodelphis_domestica
ENSSDUG00000000268	larp1	100	89.730	ENSMALG00000017180	larp1	100	89.730	Monopterus_albus
ENSSDUG00000000268	larp1	97	69.752	MGP_CAROLIEiJ_G0016383	Larp1	99	64.089	Mus_caroli
ENSSDUG00000000268	larp1	97	69.865	ENSMUSG00000037331	Larp1	99	64.178	Mus_musculus
ENSSDUG00000000268	larp1	97	69.977	MGP_PahariEiJ_G0017518	Larp1	99	64.032	Mus_pahari
ENSSDUG00000000268	larp1	97	69.865	MGP_SPRETEiJ_G0017225	Larp1	99	64.178	Mus_spretus
ENSSDUG00000000268	larp1	75	68.353	ENSMPUG00000013564	LARP1	99	60.526	Mustela_putorius_furo
ENSSDUG00000000268	larp1	97	66.104	ENSMLUG00000002608	LARP1	99	64.529	Myotis_lucifugus
ENSSDUG00000000268	larp1	97	68.824	ENSNGAG00000001098	Larp1	98	65.261	Nannospalax_galili
ENSSDUG00000000268	larp1	95	86.516	ENSNBRG00000008963	larp1	98	87.786	Neolamprologus_brichardi
ENSSDUG00000000268	larp1	95	70.705	ENSNLEG00000016588	LARP1	98	65.231	Nomascus_leucogenys
ENSSDUG00000000268	larp1	97	68.634	ENSMEUG00000002957	LARP1	93	68.036	Notamacropus_eugenii
ENSSDUG00000000268	larp1	95	70.151	ENSOPRG00000013014	LARP1	99	67.508	Ochotona_princeps
ENSSDUG00000000268	larp1	95	70.930	ENSODEG00000010824	LARP1	99	67.440	Octodon_degus
ENSSDUG00000000268	larp1	99	86.146	ENSONIG00000017308	larp1	100	86.767	Oreochromis_niloticus
ENSSDUG00000000268	larp1	99	69.546	ENSOANG00000005096	LARP1	99	68.182	Ornithorhynchus_anatinus
ENSSDUG00000000268	larp1	97	69.775	ENSOCUG00000013066	LARP1	99	63.316	Oryctolagus_cuniculus
ENSSDUG00000000268	larp1	100	85.676	ENSORLG00000000824	larp1	100	85.586	Oryzias_latipes
ENSSDUG00000000268	larp1	100	85.586	ENSORLG00020022241	larp1	100	85.495	Oryzias_latipes_hni
ENSSDUG00000000268	larp1	100	84.324	ENSORLG00015007538	larp1	100	85.405	Oryzias_latipes_hsok
ENSSDUG00000000268	larp1	100	83.874	ENSOMEG00000003134	larp1	100	84.229	Oryzias_melastigma
ENSSDUG00000000268	larp1	97	69.344	ENSOGAG00000016750	LARP1	99	67.641	Otolemur_garnettii
ENSSDUG00000000268	larp1	94	69.330	ENSOARG00000009893	LARP1	99	65.179	Ovis_aries
ENSSDUG00000000268	larp1	95	70.513	ENSPPAG00000042993	LARP1	92	67.137	Pan_paniscus
ENSSDUG00000000268	larp1	95	69.177	ENSPPRG00000009780	LARP1	93	65.559	Panthera_pardus
ENSSDUG00000000268	larp1	95	69.419	ENSPTIG00000007013	LARP1	93	66.062	Panthera_tigris_altaica
ENSSDUG00000000268	larp1	95	70.513	ENSPTRG00000017447	LARP1	99	60.651	Pan_troglodytes
ENSSDUG00000000268	larp1	94	70.892	ENSPANG00000008080	LARP1	99	61.174	Papio_anubis
ENSSDUG00000000268	larp1	98	78.826	ENSPKIG00000010096	larp1	99	76.344	Paramormyrops_kingsleyae
ENSSDUG00000000268	larp1	97	74.432	ENSPKIG00000017153	-	99	67.424	Paramormyrops_kingsleyae
ENSSDUG00000000268	larp1	91	81.615	ENSPMGG00000011599	larp1	97	78.592	Periophthalmus_magnuspinnatus
ENSSDUG00000000268	larp1	97	68.581	ENSPEMG00000022523	Larp1	98	64.990	Peromyscus_maniculatus_bairdii
ENSSDUG00000000268	larp1	97	71.256	ENSPCIG00000019242	LARP1	89	65.732	Phascolarctos_cinereus
ENSSDUG00000000268	larp1	100	84.602	ENSPFOG00000005836	larp1	100	84.512	Poecilia_formosa
ENSSDUG00000000268	larp1	100	84.244	ENSPLAG00000008936	larp1	100	84.333	Poecilia_latipinna
ENSSDUG00000000268	larp1	100	84.244	ENSPMEG00000013656	larp1	100	84.154	Poecilia_mexicana
ENSSDUG00000000268	larp1	99	80.605	ENSPREG00000005726	larp1	99	86.687	Poecilia_reticulata
ENSSDUG00000000268	larp1	95	68.102	ENSPCAG00000006407	LARP1	93	82.198	Procavia_capensis
ENSSDUG00000000268	larp1	95	62.212	ENSPCOG00000016949	LARP1	99	63.206	Propithecus_coquereli
ENSSDUG00000000268	larp1	95	70.534	ENSPVAG00000002262	LARP1	98	63.612	Pteropus_vampyrus
ENSSDUG00000000268	larp1	100	91.577	ENSPNYG00000007938	larp1	99	93.699	Pundamilia_nyererei
ENSSDUG00000000268	larp1	97	76.977	ENSPNAG00000021427	larp1	99	75.318	Pygocentrus_nattereri
ENSSDUG00000000268	larp1	97	68.581	ENSRNOG00000031544	Larp1	98	65.121	Rattus_norvegicus
ENSSDUG00000000268	larp1	94	70.892	ENSRBIG00000038005	LARP1	92	67.440	Rhinopithecus_bieti
ENSSDUG00000000268	larp1	95	70.513	ENSRROG00000034073	LARP1	98	70.022	Rhinopithecus_roxellana
ENSSDUG00000000268	larp1	95	70.862	ENSSBOG00000019816	LARP1	99	65.187	Saimiri_boliviensis_boliviensis
ENSSDUG00000000268	larp1	97	71.445	ENSSHAG00000011115	LARP1	99	69.583	Sarcophilus_harrisii
ENSSDUG00000000268	larp1	97	75.282	ENSSFOG00015020304	larp1	95	77.822	Scleropages_formosus
ENSSDUG00000000268	larp1	96	77.804	ENSSFOG00015018058	-	98	72.878	Scleropages_formosus
ENSSDUG00000000268	larp1	93	85.345	ENSSMAG00000007468	larp1	98	85.728	Scophthalmus_maximus
ENSSDUG00000000268	larp1	100	99.524	ENSSLDG00000016505	larp1	100	99.524	Seriola_lalandi_dorsalis
ENSSDUG00000000268	larp1	67	84.211	ENSSARG00000013907	-	87	79.496	Sorex_araneus
ENSSDUG00000000268	larp1	97	72.242	ENSSPUG00000012179	-	99	65.374	Sphenodon_punctatus
ENSSDUG00000000268	larp1	100	93.113	ENSSPAG00000003910	larp1	100	93.381	Stegastes_partitus
ENSSDUG00000000268	larp1	95	70.499	ENSSSCG00000017069	LARP1	99	69.147	Sus_scrofa
ENSSDUG00000000268	larp1	94	72.066	ENSTGUG00000000704	LARP1	100	71.399	Taeniopygia_guttata
ENSSDUG00000000268	larp1	99	87.556	ENSTRUG00000009470	larp1	99	87.198	Takifugu_rubripes
ENSSDUG00000000268	larp1	90	69.175	ENSTBEG00000003381	LARP1	99	67.169	Tupaia_belangeri
ENSSDUG00000000268	larp1	99	68.257	ENSTTRG00000015934	LARP1	99	66.601	Tursiops_truncatus
ENSSDUG00000000268	larp1	95	70.814	ENSUAMG00000019334	LARP1	99	63.190	Ursus_americanus
ENSSDUG00000000268	larp1	95	69.528	ENSUMAG00000002934	LARP1	96	68.311	Ursus_maritimus
ENSSDUG00000000268	larp1	95	70.383	ENSVVUG00000004644	LARP1	98	70.419	Vulpes_vulpes
ENSSDUG00000000268	larp1	97	71.592	ENSXETG00000008413	larp1	97	67.315	Xenopus_tropicalis
ENSSDUG00000000268	larp1	88	84.966	ENSXCOG00000004022	larp1	99	82.445	Xiphophorus_couchianus
ENSSDUG00000000268	larp1	100	84.140	ENSXMAG00000018780	larp1	100	84.050	Xiphophorus_maculatus