EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000000315 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: uncharacterized LOC111233142
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 12616 bases
Position: chrBDQW01000372.1:45429-58044
Accession: 111233142
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000000380	zf-C2H2	PF00096.26	2.6e-13	1	2
ENSSDUP00000000380	zf-C2H2	PF00096.26	2.6e-13	2	2
ENSSDUP00000000399	zf-C2H2	PF00096.26	2.6e-13	1	2
ENSSDUP00000000399	zf-C2H2	PF00096.26	2.6e-13	2	2
ENSSDUP00000000325	zf-C2H2	PF00096.26	9.1e-13	1	2
ENSSDUP00000000325	zf-C2H2	PF00096.26	9.1e-13	2	2
ENSSDUP00000000335	zf-C2H2	PF00096.26	9.1e-13	1	2
ENSSDUP00000000335	zf-C2H2	PF00096.26	9.1e-13	2	2
ENSSDUP00000000344	zf-C2H2	PF00096.26	9.1e-13	1	2
ENSSDUP00000000344	zf-C2H2	PF00096.26	9.1e-13	2	2
ENSSDUP00000000356	zf-C2H2	PF00096.26	9.1e-13	1	2
ENSSDUP00000000356	zf-C2H2	PF00096.26	9.1e-13	2	2
ENSSDUP00000000370	zf-C2H2	PF00096.26	9.1e-13	1	2
ENSSDUP00000000370	zf-C2H2	PF00096.26	9.1e-13	2	2
ENSSDUP00000000309	zf-C2H2	PF00096.26	2.6e-12	1	2
ENSSDUP00000000309	zf-C2H2	PF00096.26	2.6e-12	2	2
ENSSDUP00000000380	zf-met	PF12874.7	0.00017	1	1
ENSSDUP00000000399	zf-met	PF12874.7	0.00017	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000000439	-	4401	-	ENSSDUP00000000399	852 (aa)	-	-
ENSSDUT00000000344	-	5379	XM_022760900	ENSSDUP00000000309	1178 (aa)	XP_022616621	-
ENSSDUT00000000417	-	4401	-	ENSSDUP00000000380	852 (aa)	-	-
ENSSDUT00000000372	-	4890	-	ENSSDUP00000000335	1015 (aa)	-	-
ENSSDUT00000000393	-	4890	-	ENSSDUP00000000356	1015 (aa)	-	-
ENSSDUT00000000381	-	4890	-	ENSSDUP00000000344	1015 (aa)	-	-
ENSSDUT00000000407	-	4890	-	ENSSDUP00000000370	1015 (aa)	-	-
ENSSDUT00000000361	-	4890	-	ENSSDUP00000000325	1015 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000000315's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000000315's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000000315	-	60	60.938	ENSSDUG00000020783	-	56	60.938
ENSSDUG00000000315	-	95	54.475	ENSSDUG00000000496	-	99	54.819

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000000315	-	81	50.809	ENSAOCG00000013038	-	98	55.215	Amphiprion_ocellaris
ENSSDUG00000000315	-	96	55.016	ENSAPEG00000018660	-	95	54.341	Amphiprion_percula
ENSSDUG00000000315	-	69	62.712	ENSFHEG00000000789	-	97	69.903	Fundulus_heteroclitus
ENSSDUG00000000315	-	80	78.947	ENSKMAG00000007762	-	84	78.947	Kryptolebias_marmoratus