EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000000551 (Gene tree)
Gene ID: 111228126
Gene Symbol: -
Alias: -
Full Name: ribosomal RNA processing 1B
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 25011 bases
Position: chrBDQW01000200.1:876530-901540
Accession: 111228126
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000000646	Nop52	PF05997.12	5.9e-64	1	1
ENSSDUP00000000636	Nop52	PF05997.12	6.7e-64	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000000688	-	5362	-	ENSSDUP00000000646	884 (aa)	-	-
ENSSDUT00000000678	-	4139	XM_022753948	ENSSDUP00000000636	939 (aa)	XP_022609669	UPI000BBF35D4

Gene Model

Click here to download ENSSDUG00000000551's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000000551's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000000551	-	58	46.174	ENSG00000160208	RRP1B	65	50.382	Homo_sapiens
ENSSDUG00000000551	-	100	57.588	ENSAPOG00000007490	-	100	57.298	Acanthochromis_polyacanthus
ENSSDUG00000000551	-	54	45.144	ENSAMEG00000011401	RRP1B	68	45.588	Ailuropoda_melanoleuca
ENSSDUG00000000551	-	99	53.403	ENSAOCG00000017894	-	100	81.053	Amphiprion_ocellaris
ENSSDUG00000000551	-	100	55.741	ENSAPEG00000024150	-	100	57.600	Amphiprion_percula
ENSSDUG00000000551	-	53	50.811	ENSACAG00000017851	RRP1B	61	51.743	Anolis_carolinensis
ENSSDUG00000000551	-	58	45.119	ENSANAG00000034889	RRP1B	65	48.855	Aotus_nancymaae
ENSSDUG00000000551	-	53	49.219	ENSBTAG00000017418	RRP1B	66	49.219	Bos_taurus
ENSSDUG00000000551	-	54	47.328	ENSCJAG00000017077	RRP1B	66	48.837	Callithrix_jacchus
ENSSDUG00000000551	-	53	44.413	ENSCAFG00000010621	RRP1B	65	48.837	Canis_familiaris
ENSSDUG00000000551	-	58	45.431	ENSCAFG00020018901	RRP1B	69	48.837	Canis_lupus_dingo
ENSSDUG00000000551	-	55	48.837	ENSCHIG00000021519	RRP1B	67	48.837	Capra_hircus
ENSSDUG00000000551	-	57	43.750	ENSCPOG00000002396	RRP1B	69	46.512	Cavia_porcellus
ENSSDUG00000000551	-	54	48.462	ENSCCAG00000029384	RRP1B	65	48.462	Cebus_capucinus
ENSSDUG00000000551	-	55	48.951	ENSCATG00000017423	RRP1B	65	49.618	Cercocebus_atys
ENSSDUG00000000551	-	50	49.231	ENSCLAG00000005622	RRP1B	68	49.231	Chinchilla_lanigera
ENSSDUG00000000551	-	55	49.296	ENSCSAG00000007961	RRP1B	66	50.000	Chlorocebus_sabaeus
ENSSDUG00000000551	-	60	52.989	ENSCPBG00000010310	RRP1B	67	51.952	Chrysemys_picta_bellii
ENSSDUG00000000551	-	55	47.917	ENSCANG00000040952	RRP1B	65	48.485	Colobus_angolensis_palliatus
ENSSDUG00000000551	-	54	46.939	ENSCGRG00001023882	-	60	60.294	Cricetulus_griseus_chok1gshd
ENSSDUG00000000551	-	54	46.939	ENSCGRG00001010889	-	68	47.482	Cricetulus_griseus_chok1gshd
ENSSDUG00000000551	-	51	46.939	ENSCGRG00000001553	Rrp1b	64	47.482	Cricetulus_griseus_crigri
ENSSDUG00000000551	-	51	68.687	ENSCSEG00000020711	-	86	68.687	Cynoglossus_semilaevis
ENSSDUG00000000551	-	54	56.215	ENSDARG00000103337	rrp1	64	54.762	Danio_rerio
ENSSDUG00000000551	-	69	45.714	ENSDNOG00000032774	RRP1B	66	46.512	Dasypus_novemcinctus
ENSSDUG00000000551	-	52	54.839	ENSETEG00000019489	RRP1B	60	55.319	Echinops_telfairi
ENSSDUG00000000551	-	54	48.855	ENSEASG00005001687	RRP1B	66	48.855	Equus_asinus_asinus
ENSSDUG00000000551	-	54	49.242	ENSECAG00000018018	RRP1B	66	49.242	Equus_caballus
ENSSDUG00000000551	-	52	62.526	ENSELUG00000015885	-	88	68.579	Esox_lucius
ENSSDUG00000000551	-	54	43.846	ENSFCAG00000010272	RRP1B	68	45.736	Felis_catus
ENSSDUG00000000551	-	51	45.205	ENSFDAG00000010899	RRP1B	63	46.970	Fukomys_damarensis
ENSSDUG00000000551	-	50	40.749	ENSFDAG00000013728	RRP1	74	48.011	Fukomys_damarensis
ENSSDUG00000000551	-	60	64.420	ENSGMOG00000001953	-	74	63.708	Gadus_morhua
ENSSDUG00000000551	-	58	50.943	ENSGALG00000035696	RRP1B	62	51.351	Gallus_gallus
ENSSDUG00000000551	-	85	58.333	ENSGACG00000001438	rrp1	100	58.333	Gasterosteus_aculeatus
ENSSDUG00000000551	-	60	52.316	ENSGAGG00000000375	RRP1B	62	52.162	Gopherus_agassizii
ENSSDUG00000000551	-	58	46.174	ENSGGOG00000012069	RRP1B	65	50.382	Gorilla_gorilla
ENSSDUG00000000551	-	54	47.287	ENSHGLG00000004968	RRP1B	71	47.287	Heterocephalus_glaber_female
ENSSDUG00000000551	-	68	56.522	ENSIPUG00000000673	-	72	55.643	Ictalurus_punctatus
ENSSDUG00000000551	-	51	45.892	ENSSTOG00000011790	RRP1B	67	45.185	Ictidomys_tridecemlineatus
ENSSDUG00000000551	-	50	49.645	ENSJJAG00000021279	Rrp1b	62	50.769	Jaculus_jaculus
ENSSDUG00000000551	-	50	43.018	ENSJJAG00000018886	Rrp1	76	49.280	Jaculus_jaculus
ENSSDUG00000000551	-	66	67.952	ENSKMAG00000005539	rrp1	89	66.121	Kryptolebias_marmoratus
ENSSDUG00000000551	-	54	52.139	ENSLACG00000017332	-	65	52.139	Latimeria_chalumnae
ENSSDUG00000000551	-	52	60.434	ENSLOCG00000004064	-	66	60.533	Lepisosteus_oculatus
ENSSDUG00000000551	-	52	47.287	ENSLAFG00000000766	RRP1B	86	44.357	Loxodonta_africana
ENSSDUG00000000551	-	55	48.252	ENSMFAG00000039152	RRP1B	65	48.855	Macaca_fascicularis
ENSSDUG00000000551	-	51	52.941	ENSMMUG00000000104	RRP1B	61	54.737	Macaca_mulatta
ENSSDUG00000000551	-	55	46.853	ENSMNEG00000034269	RRP1B	65	47.328	Macaca_nemestrina
ENSSDUG00000000551	-	51	49.650	ENSMLEG00000040044	RRP1B	62	50.382	Mandrillus_leucophaeus
ENSSDUG00000000551	-	52	50.404	ENSMGAG00000014591	RRP1B	61	51.613	Meleagris_gallopavo
ENSSDUG00000000551	-	56	46.575	ENSMAUG00000021508	Rrp1b	62	48.438	Mesocricetus_auratus
ENSSDUG00000000551	-	54	49.618	ENSMICG00000004686	RRP1B	68	49.618	Microcebus_murinus
ENSSDUG00000000551	-	52	43.357	ENSMOCG00000001117	Rrp1b	64	44.526	Microtus_ochrogaster
ENSSDUG00000000551	-	53	49.176	ENSMODG00000021033	RRP1B	64	49.072	Monodelphis_domestica
ENSSDUG00000000551	-	57	44.595	MGP_CAROLIEiJ_G0021376	Rrp1b	58	57.353	Mus_caroli
ENSSDUG00000000551	-	52	43.919	ENSMUSG00000058392	Rrp1b	58	58.824	Mus_musculus
ENSSDUG00000000551	-	54	44.295	MGP_PahariEiJ_G0023695	Rrp1b	58	57.353	Mus_pahari
ENSSDUG00000000551	-	57	43.919	MGP_SPRETEiJ_G0022290	Rrp1b	58	58.824	Mus_spretus
ENSSDUG00000000551	-	54	47.244	ENSMLUG00000007738	RRP1B	66	47.244	Myotis_lucifugus
ENSSDUG00000000551	-	55	47.368	ENSNGAG00000021073	Rrp1b	62	52.713	Nannospalax_galili
ENSSDUG00000000551	-	58	45.910	ENSNLEG00000001490	RRP1B	67	50.382	Nomascus_leucogenys
ENSSDUG00000000551	-	50	48.855	ENSODEG00000013177	RRP1B	64	48.462	Octodon_degus
ENSSDUG00000000551	-	56	74.790	ENSONIG00000004264	rrp1	62	74.790	Oreochromis_niloticus
ENSSDUG00000000551	-	54	48.201	ENSOANG00000006470	RRP1B	65	48.837	Ornithorhynchus_anatinus
ENSSDUG00000000551	-	100	46.327	ENSORLG00020007199	-	76	65.657	Oryzias_latipes_hni
ENSSDUG00000000551	-	70	66.250	ENSOMEG00000016910	-	62	65.617	Oryzias_melastigma
ENSSDUG00000000551	-	56	43.262	ENSOGAG00000009872	RRP1B	70	51.402	Otolemur_garnettii
ENSSDUG00000000551	-	55	45.087	ENSPPAG00000035319	RRP1B	62	50.382	Pan_paniscus
ENSSDUG00000000551	-	54	45.113	ENSPPRG00000010356	RRP1B	67	46.970	Panthera_pardus
ENSSDUG00000000551	-	55	48.951	ENSPTRG00000013958	RRP1B	65	49.618	Pan_troglodytes
ENSSDUG00000000551	-	55	48.252	ENSPANG00000011090	RRP1B	65	50.382	Papio_anubis
ENSSDUG00000000551	-	78	59.184	ENSPKIG00000003422	-	58	64.286	Paramormyrops_kingsleyae
ENSSDUG00000000551	-	54	53.533	ENSPSIG00000008152	RRP1B	60	53.514	Pelodiscus_sinensis
ENSSDUG00000000551	-	52	47.482	ENSPEMG00000022490	Rrp1b	67	49.219	Peromyscus_maniculatus_bairdii
ENSSDUG00000000551	-	54	47.632	ENSPCIG00000015513	RRP1B	63	51.613	Phascolarctos_cinereus
ENSSDUG00000000551	-	65	64.439	ENSPFOG00000007424	-	72	67.095	Poecilia_formosa
ENSSDUG00000000551	-	63	66.176	ENSPREG00000015673	-	70	66.010	Poecilia_reticulata
ENSSDUG00000000551	-	58	46.174	ENSPPYG00000011470	RRP1B	65	50.382	Pongo_abelii
ENSSDUG00000000551	-	59	46.173	ENSPCOG00000017927	RRP1B	68	50.382	Propithecus_coquereli
ENSSDUG00000000551	-	56	42.568	ENSPVAG00000001436	RRP1B	66	46.923	Pteropus_vampyrus
ENSSDUG00000000551	-	56	43.243	ENSRNOG00000001194	Rrp1b	68	43.796	Rattus_norvegicus
ENSSDUG00000000551	-	55	48.630	ENSRBIG00000041689	RRP1B	64	49.254	Rhinopithecus_bieti
ENSSDUG00000000551	-	55	48.630	ENSRROG00000031499	RRP1B	65	49.254	Rhinopithecus_roxellana
ENSSDUG00000000551	-	53	48.509	ENSSHAG00000017789	RRP1B	64	48.396	Sarcophilus_harrisii
ENSSDUG00000000551	-	54	56.338	ENSSFOG00015003932	-	63	60.317	Scleropages_formosus
ENSSDUG00000000551	-	100	64.826	ENSSMAG00000016847	-	91	77.979	Scophthalmus_maximus
ENSSDUG00000000551	-	100	97.338	ENSSLDG00000002538	-	100	97.338	Seriola_lalandi_dorsalis
ENSSDUG00000000551	-	53	49.862	ENSSPUG00000002834	RRP1B	64	48.737	Sphenodon_punctatus
ENSSDUG00000000551	-	100	56.615	ENSSPAG00000005370	-	100	58.135	Stegastes_partitus
ENSSDUG00000000551	-	50	54.839	ENSSSCG00000021698	RRP1B	67	54.839	Sus_scrofa
ENSSDUG00000000551	-	59	59.773	ENSTNIG00000005053	rrp1	70	71.038	Tetraodon_nigroviridis
ENSSDUG00000000551	-	56	43.846	ENSTTRG00000000723	RRP1B	67	43.846	Tursiops_truncatus
ENSSDUG00000000551	-	59	45.038	ENSUAMG00000026765	RRP1B	73	46.269	Ursus_americanus
ENSSDUG00000000551	-	51	45.736	ENSUMAG00000025510	RRP1B	89	45.736	Ursus_maritimus
ENSSDUG00000000551	-	53	44.286	ENSVVUG00000024509	RRP1B	65	48.837	Vulpes_vulpes
ENSSDUG00000000551	-	52	44.947	ENSXETG00000013683	rrp1b	71	44.828	Xenopus_tropicalis
ENSSDUG00000000551	-	65	66.262	ENSXMAG00000023123	-	73	66.341	Xiphophorus_maculatus