EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000000871 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 25532 bases
Position: chrBDQW01000110.1:12686733-12712264
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000001082	zf-C2H2	PF00096.26	2.6e-14	1	3
ENSSDUP00000001082	zf-C2H2	PF00096.26	2.6e-14	2	3
ENSSDUP00000001082	zf-C2H2	PF00096.26	2.6e-14	3	3
ENSSDUP00000001082	zf-met	PF12874.7	0.00026	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000001129	-	921	-	ENSSDUP00000001082	306 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000000871's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000000871's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000000871	-	97	37.374	ENSSDUG00000009421	-	80	37.374
ENSSDUG00000000871	-	91	40.517	ENSSDUG00000009601	-	92	40.506
ENSSDUG00000000871	-	91	37.607	ENSSDUG00000020595	-	96	33.803
ENSSDUG00000000871	-	73	32.174	ENSSDUG00000004449	zbtb48	50	32.174
ENSSDUG00000000871	-	76	39.640	ENSSDUG00000004835	-	94	39.640
ENSSDUG00000000871	-	51	34.091	ENSSDUG00000013215	-	56	34.091
ENSSDUG00000000871	-	95	38.255	ENSSDUG00000020810	-	79	39.918
ENSSDUG00000000871	-	91	37.931	ENSSDUG00000015191	-	86	37.931
ENSSDUG00000000871	-	66	41.121	ENSSDUG00000019911	-	59	35.821
ENSSDUG00000000871	-	91	32.314	ENSSDUG00000006740	-	79	31.496
ENSSDUG00000000871	-	56	34.513	ENSSDUG00000022412	znf648	64	34.513
ENSSDUG00000000871	-	63	42.593	ENSSDUG00000022035	-	62	42.593
ENSSDUG00000000871	-	94	38.519	ENSSDUG00000009439	-	85	38.519
ENSSDUG00000000871	-	91	41.379	ENSSDUG00000009577	-	71	41.379
ENSSDUG00000000871	-	91	38.739	ENSSDUG00000015254	-	89	38.739
ENSSDUG00000000871	-	52	41.509	ENSSDUG00000000799	-	72	41.509
ENSSDUG00000000871	-	91	35.897	ENSSDUG00000000695	-	81	35.897
ENSSDUG00000000871	-	76	36.471	ENSSDUG00000008329	-	64	36.471
ENSSDUG00000000871	-	90	38.261	ENSSDUG00000015204	-	92	38.261
ENSSDUG00000000871	-	94	47.863	ENSSDUG00000000946	-	95	45.082
ENSSDUG00000000871	-	99	38.261	ENSSDUG00000002174	-	73	38.261
ENSSDUG00000000871	-	95	36.522	ENSSDUG00000016450	-	62	36.522
ENSSDUG00000000871	-	57	43.103	ENSSDUG00000009425	-	61	43.103
ENSSDUG00000000871	-	62	32.258	ENSSDUG00000009223	zbtb41	54	32.258
ENSSDUG00000000871	-	69	34.091	ENSSDUG00000007752	scrt1b	81	34.091
ENSSDUG00000000871	-	92	40.171	ENSSDUG00000015159	-	86	40.171
ENSSDUG00000000871	-	94	35.849	ENSSDUG00000006463	-	86	35.849
ENSSDUG00000000871	-	91	39.655	ENSSDUG00000007336	-	93	39.655
ENSSDUG00000000871	-	89	38.462	ENSSDUG00000002195	-	88	38.462
ENSSDUG00000000871	-	94	38.806	ENSSDUG00000000786	-	92	34.940
ENSSDUG00000000871	-	90	38.596	ENSSDUG00000011170	znf236	55	36.111
ENSSDUG00000000871	-	57	45.283	ENSSDUG00000000705	-	76	45.283
ENSSDUG00000000871	-	50	40.179	ENSSDUG00000023764	-	93	40.179
ENSSDUG00000000871	-	94	39.394	ENSSDUG00000004089	-	96	40.741
ENSSDUG00000000871	-	78	40.741	ENSSDUG00000000838	-	58	40.741
ENSSDUG00000000871	-	78	37.363	ENSSDUG00000020805	-	95	37.363
ENSSDUG00000000871	-	87	37.500	ENSSDUG00000012926	-	76	37.500
ENSSDUG00000000871	-	57	44.037	ENSSDUG00000009563	-	80	44.037
ENSSDUG00000000871	-	78	34.054	ENSSDUG00000020788	-	66	34.054
ENSSDUG00000000871	-	78	37.500	ENSSDUG00000020783	-	54	36.066
ENSSDUG00000000871	-	95	45.283	ENSSDUG00000008943	-	85	38.261
ENSSDUG00000000871	-	95	38.261	ENSSDUG00000009534	-	66	38.261
ENSSDUG00000000871	-	95	39.130	ENSSDUG00000005401	-	85	37.931
ENSSDUG00000000871	-	94	33.043	ENSSDUG00000019932	ZNF319	72	33.043

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000000871	-	59	33.913	ENSCING00000004861	zf(c2h2)-12	76	33.333	Ciona_intestinalis
ENSSDUG00000000871	-	94	35.345	ENSCSAVG00000009574	-	98	35.345	Ciona_savignyi
ENSSDUG00000000871	-	94	34.940	ENSCSAVG00000005896	-	68	34.940	Ciona_savignyi
ENSSDUG00000000871	-	75	31.897	ENSCSEG00000005491	-	63	31.897	Cynoglossus_semilaevis
ENSSDUG00000000871	-	99	47.619	ENSCVAG00000002295	-	91	47.619	Cyprinodon_variegatus
ENSSDUG00000000871	-	95	44.545	ENSEBUG00000008392	-	82	43.103	Eptatretus_burgeri
ENSSDUG00000000871	-	95	37.931	ENSEBUG00000000735	-	98	37.931	Eptatretus_burgeri
ENSSDUG00000000871	-	98	41.085	ENSEBUG00000004841	-	93	39.394	Eptatretus_burgeri
ENSSDUG00000000871	-	95	41.221	ENSFHEG00000013644	-	85	41.221	Fundulus_heteroclitus
ENSSDUG00000000871	-	96	43.023	ENSFHEG00000012990	-	93	43.023	Fundulus_heteroclitus
ENSSDUG00000000871	-	100	34.507	ENSHCOG00000008181	-	69	34.266	Hippocampus_comes
ENSSDUG00000000871	-	91	39.091	ENSHCOG00000014881	-	73	39.091	Hippocampus_comes
ENSSDUG00000000871	-	98	42.982	ENSHCOG00000017437	-	71	42.982	Hippocampus_comes
ENSSDUG00000000871	-	90	33.636	ENSKMAG00000012909	-	80	33.636	Kryptolebias_marmoratus
ENSSDUG00000000871	-	51	34.483	ENSKMAG00000007658	-	82	34.483	Kryptolebias_marmoratus
ENSSDUG00000000871	-	94	45.192	ENSONIG00000007812	-	99	45.192	Oreochromis_niloticus
ENSSDUG00000000871	-	97	36.607	ENSONIG00000016416	-	96	36.607	Oreochromis_niloticus
ENSSDUG00000000871	-	91	34.454	ENSOMEG00000017673	-	61	34.454	Oryzias_melastigma
ENSSDUG00000000871	-	91	35.971	ENSPMGG00000010664	-	93	35.971	Periophthalmus_magnuspinnatus
ENSSDUG00000000871	-	95	40.187	ENSPMGG00000022524	-	99	40.187	Periophthalmus_magnuspinnatus
ENSSDUG00000000871	-	95	36.066	ENSPMGG00000000458	-	92	39.815	Periophthalmus_magnuspinnatus
ENSSDUG00000000871	-	59	34.959	ENSPMGG00000000218	-	68	34.959	Periophthalmus_magnuspinnatus
ENSSDUG00000000871	-	92	47.917	ENSPMGG00000000243	-	71	47.917	Periophthalmus_magnuspinnatus
ENSSDUG00000000871	-	63	34.513	ENSPMGG00000010563	-	81	34.513	Periophthalmus_magnuspinnatus
ENSSDUG00000000871	-	91	42.609	ENSPMAG00000007983	-	97	42.609	Petromyzon_marinus
ENSSDUG00000000871	-	95	40.870	ENSPFOG00000002879	-	99	40.870	Poecilia_formosa
ENSSDUG00000000871	-	77	42.241	ENSPLAG00000006174	-	76	42.241	Poecilia_latipinna
ENSSDUG00000000871	-	58	36.283	ENSPLAG00000011254	-	80	36.283	Poecilia_latipinna
ENSSDUG00000000871	-	95	47.664	ENSPMEG00000022676	-	99	47.664	Poecilia_mexicana
ENSSDUG00000000871	-	96	40.171	ENSPREG00000016204	-	71	40.171	Poecilia_reticulata
ENSSDUG00000000871	-	91	36.538	ENSTNIG00000008154	-	64	36.538	Tetraodon_nigroviridis
ENSSDUG00000000871	-	56	35.780	ENSXMAG00000022242	-	81	35.780	Xiphophorus_maculatus