EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000000905 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 7533 bases
Position: chrBDQW01000110.1:12704518-12712050
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000001128	zf-C2H2	PF00096.26	3.4e-10	1	2
ENSSDUP00000001128	zf-C2H2	PF00096.26	3.4e-10	2	2
ENSSDUP00000001128	zf-met	PF12874.7	1.1e-07	1	2
ENSSDUP00000001128	zf-met	PF12874.7	1.1e-07	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000001175	-	798	-	ENSSDUP00000001128	265 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000000905's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000000905's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000000905	-	65	42.708	ENSSDUG00000015013	-	74	42.708
ENSSDUG00000000905	-	68	33.333	ENSSDUG00000006808	-	74	33.333
ENSSDUG00000000905	-	57	43.038	ENSSDUG00000009534	-	71	43.038
ENSSDUG00000000905	-	87	30.742	ENSSDUG00000000838	-	89	30.742
ENSSDUG00000000905	-	74	38.971	ENSSDUG00000012926	-	78	38.971
ENSSDUG00000000905	-	92	41.176	ENSSDUG00000015182	-	99	41.772
ENSSDUG00000000905	-	85	44.156	ENSSDUG00000000695	-	64	44.156
ENSSDUG00000000905	-	66	44.000	ENSSDUG00000005401	-	85	44.000
ENSSDUG00000000905	-	92	31.818	ENSSDUG00000019911	-	98	31.818
ENSSDUG00000000905	-	92	45.161	ENSSDUG00000009577	-	99	46.667
ENSSDUG00000000905	-	74	39.474	ENSSDUG00000020805	-	90	39.474
ENSSDUG00000000905	-	54	42.105	ENSSDUG00000020397	prdm5	56	42.105
ENSSDUG00000000905	-	71	42.857	ENSSDUG00000013904	-	55	42.857
ENSSDUG00000000905	-	61	43.038	ENSSDUG00000000946	-	95	55.102
ENSSDUG00000000905	-	76	38.824	ENSSDUG00000020783	-	63	38.824
ENSSDUG00000000905	-	74	43.434	ENSSDUG00000020810	-	76	43.434
ENSSDUG00000000905	-	92	40.000	ENSSDUG00000009553	-	99	40.000
ENSSDUG00000000905	-	92	46.939	ENSSDUG00000022035	-	99	46.939
ENSSDUG00000000905	-	92	40.000	ENSSDUG00000009425	-	98	40.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000000905	-	69	39.474	ENSAOCG00000016897	-	70	39.474	Amphiprion_ocellaris
ENSSDUG00000000905	-	69	36.842	ENSAPEG00000001556	-	70	36.842	Amphiprion_percula
ENSSDUG00000000905	-	71	43.590	ENSCSEG00000008528	-	56	44.737	Cynoglossus_semilaevis
ENSSDUG00000000905	-	92	37.647	ENSCVAG00000006484	-	94	37.647	Cyprinodon_variegatus
ENSSDUG00000000905	-	69	40.741	ENSCVAG00000003250	-	73	40.741	Cyprinodon_variegatus
ENSSDUG00000000905	-	94	34.146	ENSHCOG00000008227	-	83	34.146	Hippocampus_comes
ENSSDUG00000000905	-	92	30.726	ENSHCOG00000019389	-	100	30.726	Hippocampus_comes
ENSSDUG00000000905	-	52	50.633	ENSHCOG00000001873	-	64	50.633	Hippocampus_comes
ENSSDUG00000000905	-	96	40.260	ENSHCOG00000008213	-	94	40.260	Hippocampus_comes
ENSSDUG00000000905	-	77	41.935	ENSHCOG00000013489	-	81	45.455	Hippocampus_comes
ENSSDUG00000000905	-	52	50.633	ENSHCOG00000008550	-	64	50.633	Hippocampus_comes
ENSSDUG00000000905	-	59	41.333	ENSLBEG00000001132	-	69	41.333	Labrus_bergylta
ENSSDUG00000000905	-	92	41.379	ENSLBEG00000011210	-	81	41.379	Labrus_bergylta
ENSSDUG00000000905	-	88	37.975	ENSORLG00020019227	-	91	37.975	Oryzias_latipes_hni
ENSSDUG00000000905	-	92	42.105	ENSPKIG00000005164	-	99	42.105	Paramormyrops_kingsleyae
ENSSDUG00000000905	-	54	46.875	ENSPMGG00000009571	-	83	46.875	Periophthalmus_magnuspinnatus
ENSSDUG00000000905	-	66	43.678	ENSPMGG00000002661	-	67	43.678	Periophthalmus_magnuspinnatus
ENSSDUG00000000905	-	60	41.772	ENSPFOG00000018860	-	95	41.772	Poecilia_formosa
ENSSDUG00000000905	-	94	37.234	ENSPFOG00000009491	-	98	37.234	Poecilia_formosa
ENSSDUG00000000905	-	94	37.234	ENSPMEG00000024117	-	98	37.234	Poecilia_mexicana
ENSSDUG00000000905	-	58	32.000	ENSPNAG00000005946	-	70	36.000	Pygocentrus_nattereri
ENSSDUG00000000905	-	54	37.063	ENSSMAG00000004259	-	69	37.063	Scophthalmus_maximus
ENSSDUG00000000905	-	54	42.308	ENSSMAG00000013291	-	91	41.667	Scophthalmus_maximus
ENSSDUG00000000905	-	71	44.068	ENSXCOG00000003441	-	63	44.068	Xiphophorus_couchianus
ENSSDUG00000000905	-	72	30.088	ENSXCOG00000014360	-	60	30.088	Xiphophorus_couchianus