EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000000909 (Gene tree)
Gene ID: 111217932
Gene Symbol: -
Alias: -
Full Name: uncharacterized LOC111217932
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 13205 bases
Position: chrBDQW01000050.1:28347-41551
Accession: 111217932
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000001129	zf-C2H2	PF00096.26	4.1e-24	1	4
ENSSDUP00000001129	zf-C2H2	PF00096.26	4.1e-24	2	4
ENSSDUP00000001129	zf-C2H2	PF00096.26	4.1e-24	3	4
ENSSDUP00000001129	zf-C2H2	PF00096.26	4.1e-24	4	4
ENSSDUP00000001122	zf-C2H2	PF00096.26	2.6e-23	1	3
ENSSDUP00000001122	zf-C2H2	PF00096.26	2.6e-23	2	3
ENSSDUP00000001122	zf-C2H2	PF00096.26	2.6e-23	3	3
ENSSDUP00000001142	zf-C2H2	PF00096.26	1.2e-13	1	2
ENSSDUP00000001142	zf-C2H2	PF00096.26	1.2e-13	2	2
ENSSDUP00000001129	zf-met	PF12874.7	7.9e-07	1	1
ENSSDUP00000001122	zf-met	PF12874.7	3.7e-06	1	1
ENSSDUP00000001142	zf-met	PF12874.7	1.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000001176	-	7029	-	ENSSDUP00000001129	1250 (aa)	-	-
ENSSDUT00000001190	-	1311	-	ENSSDUP00000001142	436 (aa)	-	-
ENSSDUT00000001170	-	7968	XM_022739978	ENSSDUP00000001122	1545 (aa)	XP_022595699	-

Gene Model

Click here to download ENSSDUG00000000909's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000000909's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000000909	-	50	41.549	ENSSDUG00000004892	-	87	34.659
ENSSDUG00000000909	-	50	45.324	ENSSDUG00000005401	-	86	45.283
ENSSDUG00000000909	-	61	40.625	ENSSDUG00000016734	-	63	38.172
ENSSDUG00000000909	-	55	44.295	ENSSDUG00000020595	-	96	44.898
ENSSDUG00000000909	-	50	37.324	ENSSDUG00000019932	ZNF319	91	37.056

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000000909	-	94	68.786	ENSMAMG00000007046	-	98	57.585	Mastacembelus_armatus
ENSSDUG00000000909	-	52	38.298	ENSNBRG00000013838	-	59	38.298	Neolamprologus_brichardi
ENSSDUG00000000909	-	51	43.972	ENSOMEG00000010906	-	50	43.182	Oryzias_melastigma
ENSSDUG00000000909	-	100	96.720	ENSSLDG00000007500	-	90	96.052	Seriola_lalandi_dorsalis