EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000000912 (Gene tree)
Gene ID: 111220611
Gene Symbol: papolg
Alias: zgc:63762
Full Name: poly(A) polymerase gamma
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 16472 bases
Position: chrBDQW01000073.1:4439033-4455504
Accession: 111220611
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000001310	PAP_RNA-bind	PF04926.15	3.3e-29	1	2
ENSSDUP00000001310	PAP_RNA-bind	PF04926.15	3.3e-29	2	2
ENSSDUP00000001275	PAP_RNA-bind	PF04926.15	5e-29	1	2
ENSSDUP00000001275	PAP_RNA-bind	PF04926.15	5e-29	2	2
ENSSDUP00000001243	PAP_RNA-bind	PF04926.15	5.1e-29	1	2
ENSSDUP00000001243	PAP_RNA-bind	PF04926.15	5.1e-29	2	2
ENSSDUP00000001219	PAP_RNA-bind	PF04926.15	5.5e-29	1	2
ENSSDUP00000001219	PAP_RNA-bind	PF04926.15	5.5e-29	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000001267	-	3667	XM_022743751	ENSSDUP00000001219	821 (aa)	XP_022599472	UPI000BBEAE9D
ENSSDUT00000001327	-	3583	-	ENSSDUP00000001275	793 (aa)	-	-
ENSSDUT00000001362	-	2022	-	ENSSDUP00000001310	673 (aa)	-	-
ENSSDUT00000001295	-	3613	XM_022743753	ENSSDUP00000001243	803 (aa)	XP_022599474	-

Gene Model

Click here to download ENSSDUG00000000912's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000000912's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000000912	papolg	71	55.187	ENSSDUG00000018247	-	72	55.187

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000000912	papolg	99	70.692	ENSG00000115421	PAPOLG	100	87.607	Homo_sapiens
ENSSDUG00000000912	papolg	100	94.453	ENSAPOG00000004798	papolg	100	94.453	Acanthochromis_polyacanthus
ENSSDUG00000000912	papolg	99	69.565	ENSAMEG00000018227	PAPOLG	99	71.660	Ailuropoda_melanoleuca
ENSSDUG00000000912	papolg	100	91.304	ENSACIG00000010546	papolg	100	91.014	Amphilophus_citrinellus
ENSSDUG00000000912	papolg	100	93.397	ENSAOCG00000010254	papolg	100	93.397	Amphiprion_ocellaris
ENSSDUG00000000912	papolg	100	93.157	ENSAPEG00000006944	papolg	100	93.157	Amphiprion_percula
ENSSDUG00000000912	papolg	100	94.478	ENSATEG00000009007	papolg	100	94.598	Anabas_testudineus
ENSSDUG00000000912	papolg	98	65.447	ENSAPLG00000006813	PAPOLG	99	65.765	Anas_platyrhynchos
ENSSDUG00000000912	papolg	78	59.801	ENSACAG00000015048	-	100	60.299	Anolis_carolinensis
ENSSDUG00000000912	papolg	99	72.028	ENSANAG00000024627	PAPOLG	100	74.306	Aotus_nancymaae
ENSSDUG00000000912	papolg	100	89.753	ENSACLG00000015592	papolg	100	89.801	Astatotilapia_calliptera
ENSSDUG00000000912	papolg	99	78.552	ENSAMXG00000004611	papolg	100	78.150	Astyanax_mexicanus
ENSSDUG00000000912	papolg	97	72.473	ENSBTAG00000007414	PAPOLG	100	72.340	Bos_taurus
ENSSDUG00000000912	papolg	99	72.507	ENSCJAG00000009102	PAPOLG	100	72.372	Callithrix_jacchus
ENSSDUG00000000912	papolg	99	71.391	ENSCAFG00000002975	PAPOLG	100	62.785	Canis_familiaris
ENSSDUG00000000912	papolg	99	73.247	ENSCAFG00020026859	PAPOLG	100	73.757	Canis_lupus_dingo
ENSSDUG00000000912	papolg	99	70.310	ENSCHIG00000015082	PAPOLG	100	72.074	Capra_hircus
ENSSDUG00000000912	papolg	99	71.620	ENSTSYG00000004947	PAPOLG	100	71.486	Carlito_syrichta
ENSSDUG00000000912	papolg	57	81.102	ENSCAPG00000014901	-	100	81.102	Cavia_aperea
ENSSDUG00000000912	papolg	99	71.120	ENSCPOG00000010306	PAPOLG	100	72.386	Cavia_porcellus
ENSSDUG00000000912	papolg	99	72.587	ENSCCAG00000026893	PAPOLG	100	74.444	Cebus_capucinus
ENSSDUG00000000912	papolg	89	82.251	ENSCATG00000044395	PAPOLG	100	82.251	Cercocebus_atys
ENSSDUG00000000912	papolg	99	71.024	ENSCLAG00000008603	PAPOLG	100	72.289	Chinchilla_lanigera
ENSSDUG00000000912	papolg	99	70.556	ENSCSAG00000014408	PAPOLG	100	72.237	Chlorocebus_sabaeus
ENSSDUG00000000912	papolg	89	70.482	ENSCHOG00000014028	PAPOLG	100	70.331	Choloepus_hoffmanni
ENSSDUG00000000912	papolg	73	64.300	ENSCING00000024664	-	92	64.300	Ciona_intestinalis
ENSSDUG00000000912	papolg	72	64.948	ENSCSAVG00000009085	-	97	64.948	Ciona_savignyi
ENSSDUG00000000912	papolg	97	74.444	ENSCANG00000038120	PAPOLG	100	74.306	Colobus_angolensis_palliatus
ENSSDUG00000000912	papolg	99	70.421	ENSCGRG00001014951	Papolg	100	72.049	Cricetulus_griseus_chok1gshd
ENSSDUG00000000912	papolg	99	70.421	ENSCGRG00000005552	-	100	72.049	Cricetulus_griseus_crigri
ENSSDUG00000000912	papolg	100	89.362	ENSCSEG00000000771	papolg	99	90.084	Cynoglossus_semilaevis
ENSSDUG00000000912	papolg	100	86.251	ENSCVAG00000016602	papolg	100	86.722	Cyprinodon_variegatus
ENSSDUG00000000912	papolg	99	79.521	ENSDARG00000012141	papolg	100	79.521	Danio_rerio
ENSSDUG00000000912	papolg	99	68.286	ENSDNOG00000011326	PAPOLG	100	69.839	Dasypus_novemcinctus
ENSSDUG00000000912	papolg	64	86.247	ENSDORG00000016228	Papolg	100	86.247	Dipodomys_ordii
ENSSDUG00000000912	papolg	99	56.662	ENSETEG00000011815	PAPOLG	100	57.937	Echinops_telfairi
ENSSDUG00000000912	papolg	68	58.734	ENSEBUG00000005042	-	78	60.909	Eptatretus_burgeri
ENSSDUG00000000912	papolg	65	72.396	ENSEBUG00000004020	papolg	90	72.396	Eptatretus_burgeri
ENSSDUG00000000912	papolg	99	70.350	ENSEASG00005002038	PAPOLG	100	72.244	Equus_asinus_asinus
ENSSDUG00000000912	papolg	99	70.350	ENSECAG00000009859	PAPOLG	98	72.155	Equus_caballus
ENSSDUG00000000912	papolg	99	62.432	ENSEEUG00000006196	PAPOLG	100	64.096	Erinaceus_europaeus
ENSSDUG00000000912	papolg	100	81.532	ENSELUG00000014497	papolg	99	82.169	Esox_lucius
ENSSDUG00000000912	papolg	99	70.350	ENSFCAG00000026126	PAPOLG	100	71.352	Felis_catus
ENSSDUG00000000912	papolg	80	72.963	ENSFALG00000011079	PAPOLG	96	60.782	Ficedula_albicollis
ENSSDUG00000000912	papolg	99	72.193	ENSFDAG00000010662	PAPOLG	97	72.059	Fukomys_damarensis
ENSSDUG00000000912	papolg	64	85.553	ENSFHEG00000019080	papolg	97	84.962	Fundulus_heteroclitus
ENSSDUG00000000912	papolg	99	83.724	ENSGMOG00000018772	papolg	94	93.537	Gadus_morhua
ENSSDUG00000000912	papolg	99	63.862	ENSGALG00000007853	PAPOLG	100	64.966	Gallus_gallus
ENSSDUG00000000912	papolg	100	87.161	ENSGAFG00000003263	papolg	100	87.470	Gambusia_affinis
ENSSDUG00000000912	papolg	99	84.657	ENSGACG00000002718	papolg	100	90.763	Gasterosteus_aculeatus
ENSSDUG00000000912	papolg	99	72.448	ENSGGOG00000006083	PAPOLG	100	74.306	Gorilla_gorilla
ENSSDUG00000000912	papolg	100	89.753	ENSHBUG00000004882	papolg	100	89.801	Haplochromis_burtoni
ENSSDUG00000000912	papolg	99	71.390	ENSHGLG00000019610	PAPOLG	99	72.666	Heterocephalus_glaber_female
ENSSDUG00000000912	papolg	99	71.486	ENSHGLG00100010429	PAPOLG	99	72.752	Heterocephalus_glaber_male
ENSSDUG00000000912	papolg	100	91.108	ENSHCOG00000006782	papolg	100	91.108	Hippocampus_comes
ENSSDUG00000000912	papolg	99	79.122	ENSIPUG00000021642	papolg	100	79.650	Ictalurus_punctatus
ENSSDUG00000000912	papolg	99	70.081	ENSSTOG00000010861	PAPOLG	100	71.979	Ictidomys_tridecemlineatus
ENSSDUG00000000912	papolg	64	86.480	ENSJJAG00000015601	Papolg	100	86.480	Jaculus_jaculus
ENSSDUG00000000912	papolg	100	88.383	ENSKMAG00000016439	papolg	100	88.383	Kryptolebias_marmoratus
ENSSDUG00000000912	papolg	95	97.849	ENSLBEG00000023218	papolg	100	87.156	Labrus_bergylta
ENSSDUG00000000912	papolg	99	63.490	ENSLACG00000009543	PAPOLG	99	66.218	Latimeria_chalumnae
ENSSDUG00000000912	papolg	99	78.760	ENSLOCG00000016130	papolg	100	78.496	Lepisosteus_oculatus
ENSSDUG00000000912	papolg	99	72.193	ENSLAFG00000010404	PAPOLG	100	85.781	Loxodonta_africana
ENSSDUG00000000912	papolg	99	70.421	ENSMFAG00000042450	PAPOLG	100	72.507	Macaca_fascicularis
ENSSDUG00000000912	papolg	99	70.421	ENSMMUG00000000498	PAPOLG	100	72.507	Macaca_mulatta
ENSSDUG00000000912	papolg	99	62.803	ENSMNEG00000035939	PAPOLG	100	64.926	Macaca_nemestrina
ENSSDUG00000000912	papolg	99	74.167	ENSMLEG00000039462	PAPOLG	100	74.444	Mandrillus_leucophaeus
ENSSDUG00000000912	papolg	100	91.837	ENSMAMG00000010667	papolg	100	91.957	Mastacembelus_armatus
ENSSDUG00000000912	papolg	100	89.753	ENSMZEG00005018140	papolg	99	90.805	Maylandia_zebra
ENSSDUG00000000912	papolg	99	61.725	ENSMGAG00000001741	PAPOLG	100	63.733	Meleagris_gallopavo
ENSSDUG00000000912	papolg	99	71.351	ENSMAUG00000009088	Papolg	99	72.530	Mesocricetus_auratus
ENSSDUG00000000912	papolg	99	71.923	ENSMICG00000010042	PAPOLG	100	73.757	Microcebus_murinus
ENSSDUG00000000912	papolg	99	70.872	ENSMOCG00000006857	Papolg	100	71.812	Microtus_ochrogaster
ENSSDUG00000000912	papolg	99	91.622	ENSMMOG00000008020	papolg	99	91.622	Mola_mola
ENSSDUG00000000912	papolg	96	70.950	ENSMODG00000002160	PAPOLG	99	70.929	Monodelphis_domestica
ENSSDUG00000000912	papolg	100	91.717	ENSMALG00000007012	papolg	100	91.717	Monopterus_albus
ENSSDUG00000000912	papolg	99	71.216	MGP_CAROLIEiJ_G0016144	Papolg	99	87.089	Mus_caroli
ENSSDUG00000000912	papolg	99	71.216	ENSMUSG00000020273	Papolg	99	87.089	Mus_musculus
ENSSDUG00000000912	papolg	99	70.541	MGP_PahariEiJ_G0016746	Papolg	100	71.946	Mus_pahari
ENSSDUG00000000912	papolg	99	71.198	MGP_SPRETEiJ_G0016987	Papolg	99	87.089	Mus_spretus
ENSSDUG00000000912	papolg	100	69.624	ENSMPUG00000005165	PAPOLG	90	71.620	Mustela_putorius_furo
ENSSDUG00000000912	papolg	99	71.833	ENSMLUG00000009853	PAPOLG	99	71.698	Myotis_lucifugus
ENSSDUG00000000912	papolg	99	70.676	ENSNGAG00000001120	Papolg	100	72.483	Nannospalax_galili
ENSSDUG00000000912	papolg	100	74.967	ENSNBRG00000011943	papolg	99	80.345	Neolamprologus_brichardi
ENSSDUG00000000912	papolg	64	86.014	ENSNLEG00000009507	-	100	86.014	Nomascus_leucogenys
ENSSDUG00000000912	papolg	69	68.923	ENSMEUG00000013605	-	68	68.923	Notamacropus_eugenii
ENSSDUG00000000912	papolg	99	71.620	ENSOPRG00000009630	PAPOLG	100	71.486	Ochotona_princeps
ENSSDUG00000000912	papolg	63	83.452	ENSODEG00000012424	PAPOLG	99	83.771	Octodon_degus
ENSSDUG00000000912	papolg	99	83.875	ENSONIG00000002985	papolg	100	83.558	Oreochromis_niloticus
ENSSDUG00000000912	papolg	96	71.162	ENSOANG00000012403	PAPOLG	99	70.635	Ornithorhynchus_anatinus
ENSSDUG00000000912	papolg	99	70.620	ENSOCUG00000004962	PAPOLG	100	72.155	Oryctolagus_cuniculus
ENSSDUG00000000912	papolg	100	87.919	ENSORLG00000001577	papolg	100	87.919	Oryzias_latipes
ENSSDUG00000000912	papolg	100	87.784	ENSORLG00020002482	papolg	100	88.144	Oryzias_latipes_hni
ENSSDUG00000000912	papolg	100	87.919	ENSORLG00015008836	papolg	100	87.919	Oryzias_latipes_hsok
ENSSDUG00000000912	papolg	100	89.115	ENSOMEG00000001406	papolg	100	88.995	Oryzias_melastigma
ENSSDUG00000000912	papolg	54	61.369	ENSOGAG00000003145	PAPOLG	100	64.734	Otolemur_garnettii
ENSSDUG00000000912	papolg	99	70.445	ENSOARG00000001563	PAPOLG	91	71.676	Ovis_aries
ENSSDUG00000000912	papolg	97	74.722	ENSPPAG00000019917	PAPOLG	100	74.583	Pan_paniscus
ENSSDUG00000000912	papolg	99	70.755	ENSPPRG00000023250	PAPOLG	100	71.754	Panthera_pardus
ENSSDUG00000000912	papolg	99	70.620	ENSPTIG00000018126	PAPOLG	100	71.620	Panthera_tigris_altaica
ENSSDUG00000000912	papolg	99	72.448	ENSPTRG00000011948	PAPOLG	100	74.583	Pan_troglodytes
ENSSDUG00000000912	papolg	99	66.847	ENSPANG00000014543	PAPOLG	100	68.952	Papio_anubis
ENSSDUG00000000912	papolg	98	79.637	ENSPKIG00000003313	papolg	100	79.050	Paramormyrops_kingsleyae
ENSSDUG00000000912	papolg	95	81.184	ENSPKIG00000006027	PAPOLG	98	79.416	Paramormyrops_kingsleyae
ENSSDUG00000000912	papolg	98	66.712	ENSPSIG00000013663	PAPOLG	98	68.371	Pelodiscus_sinensis
ENSSDUG00000000912	papolg	99	70.628	ENSPEMG00000008960	-	100	71.642	Peromyscus_maniculatus_bairdii
ENSSDUG00000000912	papolg	73	64.185	ENSPMAG00000004864	-	98	64.185	Petromyzon_marinus
ENSSDUG00000000912	papolg	99	53.333	ENSPMAG00000002961	papolg	99	53.414	Petromyzon_marinus
ENSSDUG00000000912	papolg	99	71.146	ENSPCIG00000028094	PAPOLG	100	71.126	Phascolarctos_cinereus
ENSSDUG00000000912	papolg	100	87.176	ENSPFOG00000012909	papolg	100	87.367	Poecilia_formosa
ENSSDUG00000000912	papolg	100	86.926	ENSPLAG00000018445	papolg	100	87.116	Poecilia_latipinna
ENSSDUG00000000912	papolg	100	87.074	ENSPMEG00000003961	papolg	100	86.722	Poecilia_mexicana
ENSSDUG00000000912	papolg	98	96.595	ENSPREG00000010358	papolg	100	86.353	Poecilia_reticulata
ENSSDUG00000000912	papolg	99	70.421	ENSPPYG00000012392	PAPOLG	100	72.102	Pongo_abelii
ENSSDUG00000000912	papolg	99	63.043	ENSPCAG00000012297	PAPOLG	100	64.642	Procavia_capensis
ENSSDUG00000000912	papolg	99	68.130	ENSPCOG00000027306	PAPOLG	100	67.172	Propithecus_coquereli
ENSSDUG00000000912	papolg	87	81.982	ENSPVAG00000013541	PAPOLG	88	81.982	Pteropus_vampyrus
ENSSDUG00000000912	papolg	100	90.462	ENSPNYG00000006729	papolg	100	90.462	Pundamilia_nyererei
ENSSDUG00000000912	papolg	99	78.877	ENSPNAG00000015521	papolg	100	78.877	Pygocentrus_nattereri
ENSSDUG00000000912	papolg	99	71.351	ENSRNOG00000006261	Papolg	100	72.752	Rattus_norvegicus
ENSSDUG00000000912	papolg	99	65.897	ENSRBIG00000040086	PAPOLG	100	67.206	Rhinopithecus_bieti
ENSSDUG00000000912	papolg	99	72.409	ENSRROG00000035954	PAPOLG	100	73.992	Rhinopithecus_roxellana
ENSSDUG00000000912	papolg	97	74.444	ENSSBOG00000026194	PAPOLG	100	74.722	Saimiri_boliviensis_boliviensis
ENSSDUG00000000912	papolg	92	71.089	ENSSHAG00000014942	PAPOLG	99	70.927	Sarcophilus_harrisii
ENSSDUG00000000912	papolg	99	68.864	ENSSFOG00015011874	papolg	100	68.855	Scleropages_formosus
ENSSDUG00000000912	papolg	99	77.443	ENSSFOG00015002383	papolg	100	76.781	Scleropages_formosus
ENSSDUG00000000912	papolg	95	97.683	ENSSMAG00000015598	papolg	100	89.171	Scophthalmus_maximus
ENSSDUG00000000912	papolg	100	99.513	ENSSLDG00000001217	papolg	100	99.513	Seriola_lalandi_dorsalis
ENSSDUG00000000912	papolg	99	68.614	ENSSPUG00000007491	PAPOLG	100	70.981	Sphenodon_punctatus
ENSSDUG00000000912	papolg	100	94.567	ENSSPAG00000009004	papolg	100	94.420	Stegastes_partitus
ENSSDUG00000000912	papolg	99	73.352	ENSSSCG00000008389	PAPOLG	100	73.214	Sus_scrofa
ENSSDUG00000000912	papolg	80	72.862	ENSTGUG00000006762	PAPOLG	99	72.862	Taeniopygia_guttata
ENSSDUG00000000912	papolg	100	86.192	ENSTRUG00000006410	papolg	100	85.574	Takifugu_rubripes
ENSSDUG00000000912	papolg	99	76.685	ENSTNIG00000017106	papolg	100	83.762	Tetraodon_nigroviridis
ENSSDUG00000000912	papolg	99	65.625	ENSTBEG00000002609	PAPOLG	100	66.397	Tupaia_belangeri
ENSSDUG00000000912	papolg	99	67.729	ENSTTRG00000006237	PAPOLG	100	67.862	Tursiops_truncatus
ENSSDUG00000000912	papolg	97	73.517	ENSUAMG00000011088	PAPOLG	100	73.793	Ursus_americanus
ENSSDUG00000000912	papolg	99	69.619	ENSUMAG00000019081	PAPOLG	90	71.719	Ursus_maritimus
ENSSDUG00000000912	papolg	99	66.621	ENSVPAG00000000492	PAPOLG	100	69.128	Vicugna_pacos
ENSSDUG00000000912	papolg	99	72.466	ENSVVUG00000010344	PAPOLG	99	71.791	Vulpes_vulpes
ENSSDUG00000000912	papolg	99	66.180	ENSXETG00000002208	papolg	100	67.942	Xenopus_tropicalis
ENSSDUG00000000912	papolg	74	96.994	ENSXCOG00000006611	papolg	73	96.994	Xiphophorus_couchianus
ENSSDUG00000000912	papolg	79	97.297	ENSXMAG00000007383	papolg	99	94.400	Xiphophorus_maculatus