EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSDUG00000001027 (Gene tree)
Gene ID
111227856
Gene Symbol
MSI1
Alias
-
Full Name
RNA-binding protein Musashi homolog 1
Gene Type
protein_coding
Species
Seriola_dumerili
Status
putative
Strand
Minus strand
Length
20056 bases
Position
chrBDQW01000017.1:7854308-7874363
Accession
111227856
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSDUP00000001276RRM_1PF00076.227.1e-3312
ENSSDUP00000001276RRM_1PF00076.227.1e-3322
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSDUT00000001328MSI1-2012574XM_022753585ENSSDUP00000001276349 (aa)XP_022609306UPI000BBE4A56
Gene Model
Click here to download ENSSDUG00000001027's gene model file
Pathways
Pathway IDPathway NameSource
sdu03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000001027's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSDUG00000001027MSI15744.949ENSSDUG00000010792hnrnpd7740.800
ENSSDUG00000001027MSI15340.642ENSSDUG00000000381hnrnpa37537.975
ENSSDUG00000001027MSI15445.989ENSSDUG00000004787hnrnpaba7938.519
ENSSDUG00000001027MSI15242.073ENSSDUG00000013908hnrnpa1a9737.674
ENSSDUG00000001027MSI110092.593ENSSDUG00000022697-10092.593
ENSSDUG00000001027MSI110062.500ENSSDUG00000021968-9978.808
ENSSDUG00000001027MSI19130.526ENSSDUG00000022611rbm388830.526
ENSSDUG00000001027MSI19772.161ENSSDUG00000014507msi2a10068.000
ENSSDUG00000001027MSI15245.000ENSSDUG00000009050-7839.216
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSDUG00000001027MSI110084.254ENSG00000135097MSI110084.254Homo_sapiens
ENSSDUG00000001027MSI110092.308ENSAPOG00000003191MSI110092.308Acanthochromis_polyacanthus
ENSSDUG00000001027MSI110099.427ENSAPOG00000023458-10099.427Acanthochromis_polyacanthus
ENSSDUG00000001027MSI19467.454ENSAMEG00000013302MSI110064.567Ailuropoda_melanoleuca
ENSSDUG00000001027MSI19483.232ENSACIG00000017754-7293.564Amphilophus_citrinellus
ENSSDUG00000001027MSI110092.308ENSAOCG00000003804MSI110092.308Amphiprion_ocellaris
ENSSDUG00000001027MSI19489.362ENSAOCG00000009031-9589.362Amphiprion_ocellaris
ENSSDUG00000001027MSI110099.427ENSAPEG00000006857-8499.427Amphiprion_percula
ENSSDUG00000001027MSI110092.308ENSAPEG00000003245MSI110092.308Amphiprion_percula
ENSSDUG00000001027MSI110095.493ENSATEG00000017059MSI110095.493Anabas_testudineus
ENSSDUG00000001027MSI110084.225ENSATEG00000023779-10084.225Anabas_testudineus
ENSSDUG00000001027MSI110085.319ENSACAG00000002762MSI110085.042Anolis_carolinensis
ENSSDUG00000001027MSI18284.615ENSANAG00000027901-8884.615Aotus_nancymaae
ENSSDUG00000001027MSI110084.254ENSANAG00000027151MSI110084.254Aotus_nancymaae
ENSSDUG00000001027MSI110099.427ENSACLG00000000117-10099.695Astatotilapia_calliptera
ENSSDUG00000001027MSI110092.877ENSACLG00000011230MSI110092.877Astatotilapia_calliptera
ENSSDUG00000001027MSI19494.044ENSAMXG00000038960msi17694.044Astyanax_mexicanus
ENSSDUG00000001027MSI110084.254ENSBTAG00000009800MSI110085.630Bos_taurus
ENSSDUG00000001027MSI110084.254ENSCJAG00000008578MSI110084.254Callithrix_jacchus
ENSSDUG00000001027MSI110083.978ENSCAFG00000010283MSI110083.978Canis_familiaris
ENSSDUG00000001027MSI19485.852ENSCAFG00020020585MSI110085.852Canis_lupus_dingo
ENSSDUG00000001027MSI110082.016ENSCHIG00000024304MSI110082.016Capra_hircus
ENSSDUG00000001027MSI19485.015ENSTSYG00000033949MSI19585.015Carlito_syrichta
ENSSDUG00000001027MSI19476.677ENSCAPG00000003919MSI17884.982Cavia_aperea
ENSSDUG00000001027MSI19585.465ENSCPOG00000012361MSI110085.673Cavia_porcellus
ENSSDUG00000001027MSI110084.254ENSCCAG00000035567MSI110084.254Cebus_capucinus
ENSSDUG00000001027MSI110084.254ENSCATG00000030019MSI110084.254Cercocebus_atys
ENSSDUG00000001027MSI19485.673ENSCLAG00000011329MSI110085.673Chinchilla_lanigera
ENSSDUG00000001027MSI17884.116ENSCSAG00000002265MSI19684.116Chlorocebus_sabaeus
ENSSDUG00000001027MSI110087.749ENSCPBG00000011349MSI110087.749Chrysemys_picta_bellii
ENSSDUG00000001027MSI19485.061ENSCANG00000040651MSI110085.061Colobus_angolensis_palliatus
ENSSDUG00000001027MSI110084.254ENSCGRG00001018883Msi110084.254Cricetulus_griseus_chok1gshd
ENSSDUG00000001027MSI19485.106ENSCGRG00000002191Msi17285.106Cricetulus_griseus_crigri
ENSSDUG00000001027MSI19489.329ENSCSEG00000011032MSI110089.329Cynoglossus_semilaevis
ENSSDUG00000001027MSI110097.708ENSCSEG00000008352-10097.708Cynoglossus_semilaevis
ENSSDUG00000001027MSI110091.453ENSCSEG00000005834-10091.453Cynoglossus_semilaevis
ENSSDUG00000001027MSI16274.312ENSCVAG00000017463-8974.312Cyprinodon_variegatus
ENSSDUG00000001027MSI110098.281ENSCVAG00000009100MSI110098.281Cyprinodon_variegatus
ENSSDUG00000001027MSI15166.418ENSCVAG00000017430zgc:1107969466.418Cyprinodon_variegatus
ENSSDUG00000001027MSI17992.130ENSDARG00000102015CABZ01037298.19892.130Danio_rerio
ENSSDUG00000001027MSI19489.524ENSDARG00000010710msi110095.327Danio_rerio
ENSSDUG00000001027MSI19482.595ENSDNOG00000005713MSI19182.595Dasypus_novemcinctus
ENSSDUG00000001027MSI19484.431ENSDORG00000005610Msi19484.431Dipodomys_ordii
ENSSDUG00000001027MSI19481.707ENSETEG00000004756MSI110081.707Echinops_telfairi
ENSSDUG00000001027MSI110084.254ENSEASG00005004736MSI110084.254Equus_asinus_asinus
ENSSDUG00000001027MSI110084.254ENSECAG00000017526MSI110084.254Equus_caballus
ENSSDUG00000001027MSI19487.195ENSELUG00000023280-10086.890Esox_lucius
ENSSDUG00000001027MSI19490.831ENSELUG00000023219MSI19290.831Esox_lucius
ENSSDUG00000001027MSI110084.254ENSFCAG00000011007MSI110084.254Felis_catus
ENSSDUG00000001027MSI19489.667ENSFALG00000007574MSI110089.667Ficedula_albicollis
ENSSDUG00000001027MSI19484.756ENSFDAG00000019586MSI110084.756Fukomys_damarensis
ENSSDUG00000001027MSI110092.308ENSFHEG00000003560-10092.308Fundulus_heteroclitus
ENSSDUG00000001027MSI110098.854ENSFHEG00000022446MSI110098.854Fundulus_heteroclitus
ENSSDUG00000001027MSI110083.099ENSGMOG00000017838-10083.099Gadus_morhua
ENSSDUG00000001027MSI110095.415ENSGMOG00000001006MSI19995.129Gadus_morhua
ENSSDUG00000001027MSI19489.313ENSGALG00000007227MSI19876.215Gallus_gallus
ENSSDUG00000001027MSI19492.097ENSGAFG00000021522MSI19492.097Gambusia_affinis
ENSSDUG00000001027MSI110075.000ENSGAFG00000005860-10075.000Gambusia_affinis
ENSSDUG00000001027MSI110098.281ENSGACG00000012679MSI110098.281Gasterosteus_aculeatus
ENSSDUG00000001027MSI110084.211ENSGACG00000008674-10084.211Gasterosteus_aculeatus
ENSSDUG00000001027MSI110087.749ENSGAGG00000016037MSI110087.749Gopherus_agassizii
ENSSDUG00000001027MSI19485.669ENSGGOG00000010328MSI110085.669Gorilla_gorilla
ENSSDUG00000001027MSI110099.427ENSHBUG00000011841-10099.427Haplochromis_burtoni
ENSSDUG00000001027MSI110092.877ENSHBUG00000021921MSI110092.877Haplochromis_burtoni
ENSSDUG00000001027MSI110083.978ENSHGLG00000012782MSI110083.978Heterocephalus_glaber_female
ENSSDUG00000001027MSI19484.756ENSHGLG00100016848MSI110084.756Heterocephalus_glaber_male
ENSSDUG00000001027MSI110092.635ENSHCOG00000012067-10092.635Hippocampus_comes
ENSSDUG00000001027MSI19190.794ENSHCOG00000012019MSI19590.794Hippocampus_comes
ENSSDUG00000001027MSI110092.264ENSIPUG00000001976msi110092.264Ictalurus_punctatus
ENSSDUG00000001027MSI19485.852ENSSTOG00000009799MSI110085.852Ictidomys_tridecemlineatus
ENSSDUG00000001027MSI110084.254ENSJJAG00000010463Msi110084.254Jaculus_jaculus
ENSSDUG00000001027MSI110072.652ENSJJAG00000010643-10071.944Jaculus_jaculus
ENSSDUG00000001027MSI19486.890ENSKMAG00000019877-10086.890Kryptolebias_marmoratus
ENSSDUG00000001027MSI110098.281ENSKMAG00000011251MSI110098.281Kryptolebias_marmoratus
ENSSDUG00000001027MSI110092.308ENSLBEG00000001375-10092.308Labrus_bergylta
ENSSDUG00000001027MSI110099.140ENSLBEG00000008789MSI110099.140Labrus_bergylta
ENSSDUG00000001027MSI19484.795ENSLACG00000018287MSI110084.795Latimeria_chalumnae
ENSSDUG00000001027MSI15278.182ENSLOCG00000008618zgc:1107967178.182Lepisosteus_oculatus
ENSSDUG00000001027MSI19175.831ENSLAFG00000009412MSI110075.831Loxodonta_africana
ENSSDUG00000001027MSI19485.673ENSMFAG00000001798MSI110085.673Macaca_fascicularis
ENSSDUG00000001027MSI19485.673ENSMMUG00000031527MSI19784.770Macaca_mulatta
ENSSDUG00000001027MSI110084.254ENSMNEG00000040034MSI110084.254Macaca_nemestrina
ENSSDUG00000001027MSI19485.061ENSMLEG00000003921MSI110085.061Mandrillus_leucophaeus
ENSSDUG00000001027MSI110091.738ENSMAMG00000018426-10091.738Mastacembelus_armatus
ENSSDUG00000001027MSI110098.567ENSMAMG00000002279MSI110098.567Mastacembelus_armatus
ENSSDUG00000001027MSI110099.427ENSMZEG00005000340-10099.427Maylandia_zebra
ENSSDUG00000001027MSI110092.877ENSMZEG00005026892MSI110092.877Maylandia_zebra
ENSSDUG00000001027MSI16394.083ENSMGAG00000016518-10094.083Meleagris_gallopavo
ENSSDUG00000001027MSI17089.300ENSMAUG00000016820Msi110089.300Mesocricetus_auratus
ENSSDUG00000001027MSI110084.254ENSMICG00000033181MSI110084.254Microcebus_murinus
ENSSDUG00000001027MSI110083.978ENSMOCG00000002286Msi110083.978Microtus_ochrogaster
ENSSDUG00000001027MSI19486.322ENSMMOG00000010492MSI19686.322Mola_mola
ENSSDUG00000001027MSI110082.235ENSMMOG00000012265-10082.235Mola_mola
ENSSDUG00000001027MSI19158.133ENSMODG00000003189-10058.133Monodelphis_domestica
ENSSDUG00000001027MSI110099.713ENSMALG00000017889MSI110099.713Monopterus_albus
ENSSDUG00000001027MSI19492.378ENSMALG00000001426-10092.378Monopterus_albus
ENSSDUG00000001027MSI110083.702MGP_CAROLIEiJ_G0027626Msi110083.702Mus_caroli
ENSSDUG00000001027MSI110083.702ENSMUSG00000054256Msi19987.654Mus_musculus
ENSSDUG00000001027MSI110086.040MGP_PahariEiJ_G0024206Msi110086.040Mus_pahari
ENSSDUG00000001027MSI110083.702MGP_SPRETEiJ_G0028624Msi110083.702Mus_spretus
ENSSDUG00000001027MSI19485.852ENSMPUG00000003168MSI110085.852Mustela_putorius_furo
ENSSDUG00000001027MSI19476.488ENSMLUG00000010313MSI110076.488Myotis_lucifugus
ENSSDUG00000001027MSI19485.106ENSNGAG00000014508Msi19185.106Nannospalax_galili
ENSSDUG00000001027MSI110099.427ENSNBRG00000000841-10099.427Neolamprologus_brichardi
ENSSDUG00000001027MSI18985.246ENSNBRG00000018012MSI19985.246Neolamprologus_brichardi
ENSSDUG00000001027MSI19075.610ENSNLEG00000015636MSI110075.610Nomascus_leucogenys
ENSSDUG00000001027MSI19465.244ENSMEUG00000015759MSI110065.244Notamacropus_eugenii
ENSSDUG00000001027MSI19178.095ENSOPRG00000016879MSI110078.095Ochotona_princeps
ENSSDUG00000001027MSI19485.061ENSODEG00000006328MSI110085.061Octodon_degus
ENSSDUG00000001027MSI110089.560ENSONIG00000019452-10089.560Oreochromis_niloticus
ENSSDUG00000001027MSI110099.427ENSONIG00000011182MSI110099.427Oreochromis_niloticus
ENSSDUG00000001027MSI19485.852ENSOCUG00000027716MSI110085.852Oryctolagus_cuniculus
ENSSDUG00000001027MSI110091.168ENSORLG00000029593MSI110091.168Oryzias_latipes
ENSSDUG00000001027MSI110099.140ENSORLG00000019978-10099.140Oryzias_latipes
ENSSDUG00000001027MSI110091.168ENSORLG00020008266MSI19986.930Oryzias_latipes_hni
ENSSDUG00000001027MSI110099.140ENSORLG00020001208-7199.140Oryzias_latipes_hni
ENSSDUG00000001027MSI110091.168ENSORLG00015003916MSI110091.168Oryzias_latipes_hsok
ENSSDUG00000001027MSI110099.140ENSORLG00015013672-7199.140Oryzias_latipes_hsok
ENSSDUG00000001027MSI110091.453ENSOMEG00000002272-10091.453Oryzias_melastigma
ENSSDUG00000001027MSI110099.140ENSOMEG00000017536MSI110099.140Oryzias_melastigma
ENSSDUG00000001027MSI19982.143ENSOGAG00000003847MSI19982.143Otolemur_garnettii
ENSSDUG00000001027MSI19482.121ENSOARG00000012097MSI110082.121Ovis_aries
ENSSDUG00000001027MSI19485.061ENSPPAG00000043073MSI110085.061Pan_paniscus
ENSSDUG00000001027MSI110084.254ENSPPRG00000000370MSI110084.254Panthera_pardus
ENSSDUG00000001027MSI19485.852ENSPTIG00000008913MSI110085.852Panthera_tigris_altaica
ENSSDUG00000001027MSI110084.254ENSPTRG00000005531MSI110084.254Pan_troglodytes
ENSSDUG00000001027MSI110083.978ENSPANG00000006335MSI110083.978Papio_anubis
ENSSDUG00000001027MSI110093.123ENSPKIG00000023575-10093.123Paramormyrops_kingsleyae
ENSSDUG00000001027MSI110093.123ENSPKIG00000016497MSI110093.123Paramormyrops_kingsleyae
ENSSDUG00000001027MSI17980.786ENSPSIG00000009621-10080.786Pelodiscus_sinensis
ENSSDUG00000001027MSI19485.714ENSPSIG00000011608-9385.714Pelodiscus_sinensis
ENSSDUG00000001027MSI19474.320ENSPMGG00000007743-9868.571Periophthalmus_magnuspinnatus
ENSSDUG00000001027MSI19193.038ENSPMGG00000000514MSI19793.038Periophthalmus_magnuspinnatus
ENSSDUG00000001027MSI19483.680ENSPEMG00000010491Msi19583.680Peromyscus_maniculatus_bairdii
ENSSDUG00000001027MSI110098.854ENSPFOG00000013113MSI110098.854Poecilia_formosa
ENSSDUG00000001027MSI110091.738ENSPFOG00000008319-8691.738Poecilia_formosa
ENSSDUG00000001027MSI110091.738ENSPLAG00000012431-9791.738Poecilia_latipinna
ENSSDUG00000001027MSI110098.854ENSPLAG00000014025-10098.854Poecilia_latipinna
ENSSDUG00000001027MSI110091.168ENSPMEG00000007025-8691.168Poecilia_mexicana
ENSSDUG00000001027MSI110098.854ENSPMEG00000012796MSI110098.854Poecilia_mexicana
ENSSDUG00000001027MSI17786.878ENSPREG00000014574-10086.878Poecilia_reticulata
ENSSDUG00000001027MSI19883.041ENSPREG00000021416-9883.041Poecilia_reticulata
ENSSDUG00000001027MSI110083.425ENSPPYG00000005027MSI110083.425Pongo_abelii
ENSSDUG00000001027MSI17690.355ENSPCAG00000002300MSI17290.355Procavia_capensis
ENSSDUG00000001027MSI110084.254ENSPCOG00000017341MSI110084.254Propithecus_coquereli
ENSSDUG00000001027MSI19469.512ENSPVAG00000002225MSI110069.512Pteropus_vampyrus
ENSSDUG00000001027MSI110099.427ENSPNYG00000002529-10099.427Pundamilia_nyererei
ENSSDUG00000001027MSI110092.877ENSPNYG00000004379MSI110092.877Pundamilia_nyererei
ENSSDUG00000001027MSI110093.123ENSPNAG00000019337msi110093.123Pygocentrus_nattereri
ENSSDUG00000001027MSI19485.531ENSRNOG00000001156Msi110085.531Rattus_norvegicus
ENSSDUG00000001027MSI19485.852ENSRBIG00000036889MSI110085.852Rhinopithecus_bieti
ENSSDUG00000001027MSI19484.848ENSRROG00000041076MSI19384.848Rhinopithecus_roxellana
ENSSDUG00000001027MSI19485.673ENSSBOG00000030259MSI19985.673Saimiri_boliviensis_boliviensis
ENSSDUG00000001027MSI19475.817ENSSHAG00000006834MSI110075.817Sarcophilus_harrisii
ENSSDUG00000001027MSI19494.562ENSSFOG00015005350MSI19694.562Scleropages_formosus
ENSSDUG00000001027MSI19494.529ENSSFOG00015014964-9594.529Scleropages_formosus
ENSSDUG00000001027MSI19492.748ENSSMAG00000009156-7391.133Scophthalmus_maximus
ENSSDUG00000001027MSI110086.533ENSSMAG00000018824MSI110086.533Scophthalmus_maximus
ENSSDUG00000001027MSI1100100.000ENSSLDG00000016832MSI1100100.000Seriola_lalandi_dorsalis
ENSSDUG00000001027MSI110079.006ENSSLDG00000018706-10079.006Seriola_lalandi_dorsalis
ENSSDUG00000001027MSI110087.464ENSSPUG00000015741MSI110087.464Sphenodon_punctatus
ENSSDUG00000001027MSI15485.625ENSSPAG00000015573zgc:1107968285.625Stegastes_partitus
ENSSDUG00000001027MSI17780.569ENSSPAG00000014085-10080.569Stegastes_partitus
ENSSDUG00000001027MSI19493.598ENSSPAG00000013098-10093.598Stegastes_partitus
ENSSDUG00000001027MSI110083.978ENSSSCG00000029365MSI110085.531Sus_scrofa
ENSSDUG00000001027MSI19486.765ENSTGUG00000009534MSI110086.765Taeniopygia_guttata
ENSSDUG00000001027MSI19480.696ENSTRUG00000015636-7980.696Takifugu_rubripes
ENSSDUG00000001027MSI15091.753ENSTRUG00000021586-9991.753Takifugu_rubripes
ENSSDUG00000001027MSI18987.402ENSTRUG00000016249MSI110087.402Takifugu_rubripes
ENSSDUG00000001027MSI19962.571ENSTNIG00000019814-9962.571Tetraodon_nigroviridis
ENSSDUG00000001027MSI110094.034ENSTNIG00000011469MSI110094.034Tetraodon_nigroviridis
ENSSDUG00000001027MSI19475.458ENSTBEG00000007182MSI110075.458Tupaia_belangeri
ENSSDUG00000001027MSI17689.474ENSTTRG00000005663MSI17889.474Tursiops_truncatus
ENSSDUG00000001027MSI17187.963ENSUAMG00000015514MSI19487.963Ursus_americanus
ENSSDUG00000001027MSI19482.085ENSUMAG00000006176MSI18882.085Ursus_maritimus
ENSSDUG00000001027MSI19485.106ENSVVUG00000020993MSI110084.384Vulpes_vulpes
ENSSDUG00000001027MSI110085.387ENSXETG00000012216msi110085.960Xenopus_tropicalis
ENSSDUG00000001027MSI19475.076ENSXCOG00000017605MSI18975.076Xiphophorus_couchianus
ENSSDUG00000001027MSI110091.453ENSXMAG00000018237-10091.453Xiphophorus_maculatus
ENSSDUG00000001027MSI110098.281ENSXMAG00000027103MSI110085.393Xiphophorus_maculatus

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