EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000001049 (Gene tree)
Gene ID: 111232355
Gene Symbol: -
Alias: -
Full Name: cleavage stimulation factor subunit 2
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 12925 bases
Position: chrBDQW01000331.1:4144456-4157380
Accession: 111232355
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000001308	RRM_1	PF00076.22	1.2e-24	1	1
ENSSDUP00000001301	RRM_1	PF00076.22	1.3e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000001353	-	3627	XM_022759822	ENSSDUP00000001301	512 (aa)	XP_022615543	UPI000BBE97C8
ENSSDUT00000001360	-	3567	XM_022759824	ENSSDUP00000001308	492 (aa)	XP_022615545	UPI000BBEF949

Gene Model

Click here to download ENSSDUG00000001049's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000001049's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000001049	-	58	54.848	ENSCJAG00000011554	-	52	73.980	Callithrix_jacchus
ENSSDUG00000001049	-	62	52.367	ENSCJAG00000039083	-	51	70.769	Callithrix_jacchus
ENSSDUG00000001049	-	97	55.911	ENSTSYG00000007750	CSTF2T	80	91.327	Carlito_syrichta
ENSSDUG00000001049	-	58	55.723	ENSCATG00000041868	-	51	74.490	Cercocebus_atys
ENSSDUG00000001049	-	96	73.547	ENSCSEG00000002596	-	100	73.129	Cynoglossus_semilaevis
ENSSDUG00000001049	-	96	52.301	ENSEBUG00000014295	CSTF2T	98	51.566	Eptatretus_burgeri
ENSSDUG00000001049	-	95	81.579	ENSELUG00000004079	-	97	82.186	Esox_lucius
ENSSDUG00000001049	-	50	89.055	ENSFDAG00000021170	CSTF2T	64	90.863	Fukomys_damarensis
ENSSDUG00000001049	-	97	56.748	ENSGGOG00000036416	-	83	83.111	Gorilla_gorilla
ENSSDUG00000001049	-	97	56.748	ENSGGOG00000042388	-	83	83.111	Gorilla_gorilla
ENSSDUG00000001049	-	85	89.552	ENSSTOG00000026303	CSTF2T	82	83.111	Ictidomys_tridecemlineatus
ENSSDUG00000001049	-	80	66.024	ENSJJAG00000019881	Cstf2t	73	65.728	Jaculus_jaculus
ENSSDUG00000001049	-	96	61.255	ENSLAFG00000002058	CSTF2T	99	59.165	Loxodonta_africana
ENSSDUG00000001049	-	58	55.255	ENSMMUG00000042906	-	58	68.000	Macaca_mulatta
ENSSDUG00000001049	-	97	55.751	ENSMAUG00000006359	Cstf2t	79	91.327	Mesocricetus_auratus
ENSSDUG00000001049	-	97	74.286	ENSMICG00000030551	-	80	83.111	Microcebus_murinus
ENSSDUG00000001049	-	81	89.552	ENSMICG00000000867	-	83	83.111	Microcebus_murinus
ENSSDUG00000001049	-	96	95.551	ENSMALG00000008842	-	98	95.551	Monopterus_albus
ENSSDUG00000001049	-	96	85.455	MGP_CAROLIEiJ_G0022872	Cstf2t	80	90.863	Mus_caroli
ENSSDUG00000001049	-	97	56.019	ENSMPUG00000020141	CSTF2T	82	83.111	Mustela_putorius_furo
ENSSDUG00000001049	-	96	52.970	ENSMLUG00000027140	-	77	85.641	Myotis_lucifugus
ENSSDUG00000001049	-	85	89.552	ENSNGAG00000003304	Cstf2t	79	91.327	Nannospalax_galili
ENSSDUG00000001049	-	97	53.440	ENSNLEG00000012025	CSTF2T	80	84.264	Nomascus_leucogenys
ENSSDUG00000001049	-	97	56.699	ENSODEG00000012386	CSTF2T	74	91.327	Octodon_degus
ENSSDUG00000001049	-	97	56.557	ENSOGAG00000014565	CSTF2T	81	91.327	Otolemur_garnettii
ENSSDUG00000001049	-	97	55.128	ENSPTIG00000021145	CSTF2T	83	82.743	Panthera_tigris_altaica
ENSSDUG00000001049	-	96	94.118	ENSPFOG00000016756	CSTF2T	94	90.909	Poecilia_formosa
ENSSDUG00000001049	-	96	55.682	ENSPCOG00000010982	CSTF2T	83	82.743	Propithecus_coquereli
ENSSDUG00000001049	-	97	55.935	ENSPVAG00000006274	CSTF2T	81	91.327	Pteropus_vampyrus
ENSSDUG00000001049	-	97	56.774	ENSRBIG00000029324	CSTF2T	83	83.111	Rhinopithecus_bieti
ENSSDUG00000001049	-	97	56.613	ENSRROG00000042507	CSTF2T	83	83.111	Rhinopithecus_roxellana
ENSSDUG00000001049	-	97	55.574	ENSSBOG00000022638	CSTF2T	80	91.327	Saimiri_boliviensis_boliviensis
ENSSDUG00000001049	-	100	99.805	ENSSLDG00000010056	-	100	99.805	Seriola_lalandi_dorsalis
ENSSDUG00000001049	-	80	90.404	ENSSARG00000002013	-	68	90.816	Sorex_araneus
ENSSDUG00000001049	-	96	95.127	ENSSPAG00000009247	-	96	95.127	Stegastes_partitus
ENSSDUG00000001049	-	97	54.777	ENSSSCG00000010430	CSTF2T	83	83.111	Sus_scrofa
ENSSDUG00000001049	-	95	88.285	ENSTRUG00000004323	-	96	85.774	Takifugu_rubripes
ENSSDUG00000001049	-	68	86.000	ENSVVUG00000002575	CSTF2T	99	55.952	Vulpes_vulpes