EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000001100 (Gene tree)
Gene ID: 111233157
Gene Symbol: cpsf1
Alias: wu:fb24c01
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 14133 bases
Position: chrBDQW01000378.1:297393-311525
Accession: 111233157
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000001488	CPSF_A	PF03178.15	5.1e-91	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000001546	-	4254	XM_022760913	ENSSDUP00000001488	1417 (aa)	XP_022616634	-

Gene Model

Click here to download ENSSDUG00000001100's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000001100's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000001100	cpsf1	100	79.006	ENSG00000071894	CPSF1	100	80.093	Homo_sapiens
ENSSDUG00000001100	cpsf1	100	91.989	ENSAPOG00000019621	cpsf1	100	91.921	Acanthochromis_polyacanthus
ENSSDUG00000001100	cpsf1	96	78.674	ENSAMEG00000005557	CPSF1	99	78.386	Ailuropoda_melanoleuca
ENSSDUG00000001100	cpsf1	100	91.319	ENSACIG00000006112	cpsf1	100	91.806	Amphilophus_citrinellus
ENSSDUG00000001100	cpsf1	100	92.271	ENSAOCG00000007120	cpsf1	100	92.409	Amphiprion_ocellaris
ENSSDUG00000001100	cpsf1	100	93.246	ENSAPEG00000005755	cpsf1	100	93.384	Amphiprion_percula
ENSSDUG00000001100	cpsf1	100	91.260	ENSATEG00000011097	cpsf1	100	91.864	Anabas_testudineus
ENSSDUG00000001100	cpsf1	93	74.870	ENSACAG00000009655	CPSF1	100	74.611	Anolis_carolinensis
ENSSDUG00000001100	cpsf1	100	79.406	ENSANAG00000036514	CPSF1	100	79.337	Aotus_nancymaae
ENSSDUG00000001100	cpsf1	100	91.766	ENSACLG00000012231	cpsf1	100	91.907	Astatotilapia_calliptera
ENSSDUG00000001100	cpsf1	100	81.844	ENSAMXG00000008485	cpsf1	100	81.634	Astyanax_mexicanus
ENSSDUG00000001100	cpsf1	100	77.951	ENSBTAG00000008355	CPSF1	100	79.110	Bos_taurus
ENSSDUG00000001100	cpsf1	100	33.112	WBGene00022301	cpsf-1	99	41.243	Caenorhabditis_elegans
ENSSDUG00000001100	cpsf1	100	79.613	ENSCJAG00000021421	CPSF1	100	79.267	Callithrix_jacchus
ENSSDUG00000001100	cpsf1	96	80.101	ENSCAFG00000001600	CPSF1	100	79.317	Canis_familiaris
ENSSDUG00000001100	cpsf1	100	78.951	ENSCAFG00020020821	CPSF1	100	79.020	Canis_lupus_dingo
ENSSDUG00000001100	cpsf1	100	76.075	ENSCHIG00000015833	CPSF1	100	75.850	Capra_hircus
ENSSDUG00000001100	cpsf1	100	79.544	ENSTSYG00000028560	CPSF1	100	81.019	Carlito_syrichta
ENSSDUG00000001100	cpsf1	96	79.885	ENSCAPG00000014921	CPSF1	98	79.524	Cavia_aperea
ENSSDUG00000001100	cpsf1	100	78.507	ENSCPOG00000011448	CPSF1	100	78.162	Cavia_porcellus
ENSSDUG00000001100	cpsf1	100	79.682	ENSCCAG00000037658	CPSF1	100	80.275	Cebus_capucinus
ENSSDUG00000001100	cpsf1	100	79.060	ENSCATG00000037234	CPSF1	100	80.093	Cercocebus_atys
ENSSDUG00000001100	cpsf1	100	79.806	ENSCLAG00000012166	CPSF1	100	79.461	Chinchilla_lanigera
ENSSDUG00000001100	cpsf1	100	79.406	ENSCSAG00000008502	CPSF1	100	79.129	Chlorocebus_sabaeus
ENSSDUG00000001100	cpsf1	99	81.228	ENSCPBG00000018910	CPSF1	96	81.158	Chrysemys_picta_bellii
ENSSDUG00000001100	cpsf1	96	49.059	ENSCING00000000514	-	100	49.059	Ciona_intestinalis
ENSSDUG00000001100	cpsf1	99	49.066	ENSCSAVG00000002293	-	99	50.698	Ciona_savignyi
ENSSDUG00000001100	cpsf1	96	77.642	ENSCANG00000032760	CPSF1	100	80.556	Colobus_angolensis_palliatus
ENSSDUG00000001100	cpsf1	100	79.391	ENSCGRG00001016344	Cpsf1	100	79.115	Cricetulus_griseus_chok1gshd
ENSSDUG00000001100	cpsf1	100	77.801	ENSCGRG00000003118	Cpsf1	100	77.524	Cricetulus_griseus_crigri
ENSSDUG00000001100	cpsf1	100	90.399	ENSCSEG00000013464	cpsf1	100	90.470	Cynoglossus_semilaevis
ENSSDUG00000001100	cpsf1	85	88.455	ENSCVAG00000014059	cpsf1	100	81.481	Cyprinodon_variegatus
ENSSDUG00000001100	cpsf1	100	87.939	ENSDARG00000034178	cpsf1	100	88.215	Danio_rerio
ENSSDUG00000001100	cpsf1	56	82.659	ENSDNOG00000043654	CPSF1	94	82.370	Dasypus_novemcinctus
ENSSDUG00000001100	cpsf1	96	79.813	ENSDORG00000006278	Cpsf1	98	79.740	Dipodomys_ordii
ENSSDUG00000001100	cpsf1	100	45.064	FBgn0024698	Cpsf160	100	45.131	Drosophila_melanogaster
ENSSDUG00000001100	cpsf1	80	85.235	ENSETEG00000006022	CPSF1	83	85.235	Echinops_telfairi
ENSSDUG00000001100	cpsf1	100	79.158	ENSEASG00005010774	CPSF1	100	79.089	Equus_asinus_asinus
ENSSDUG00000001100	cpsf1	100	79.089	ENSECAG00000022209	CPSF1	100	79.020	Equus_caballus
ENSSDUG00000001100	cpsf1	100	79.172	ENSEEUG00000000471	CPSF1	100	78.966	Erinaceus_europaeus
ENSSDUG00000001100	cpsf1	100	86.791	ENSELUG00000012271	cpsf1	100	86.929	Esox_lucius
ENSSDUG00000001100	cpsf1	100	80.000	ENSFDAG00000016060	CPSF1	100	79.654	Fukomys_damarensis
ENSSDUG00000001100	cpsf1	100	89.090	ENSFHEG00000016801	cpsf1	100	89.159	Fundulus_heteroclitus
ENSSDUG00000001100	cpsf1	100	87.759	ENSGMOG00000000796	cpsf1	100	87.906	Gadus_morhua
ENSSDUG00000001100	cpsf1	95	91.071	ENSGAFG00000018890	cpsf1	100	91.071	Gambusia_affinis
ENSSDUG00000001100	cpsf1	100	90.759	ENSGACG00000008703	cpsf1	100	90.966	Gasterosteus_aculeatus
ENSSDUG00000001100	cpsf1	100	78.153	ENSGAGG00000004276	CPSF1	98	81.940	Gopherus_agassizii
ENSSDUG00000001100	cpsf1	100	79.184	ENSGGOG00000016185	CPSF1	100	80.093	Gorilla_gorilla
ENSSDUG00000001100	cpsf1	100	94.394	ENSHBUG00000018900	cpsf1	100	94.534	Haplochromis_burtoni
ENSSDUG00000001100	cpsf1	100	79.806	ENSHGLG00000016139	CPSF1	100	79.461	Heterocephalus_glaber_female
ENSSDUG00000001100	cpsf1	100	79.737	ENSHGLG00100009750	CPSF1	100	79.391	Heterocephalus_glaber_male
ENSSDUG00000001100	cpsf1	100	88.464	ENSHCOG00000018509	cpsf1	100	88.123	Hippocampus_comes
ENSSDUG00000001100	cpsf1	100	83.459	ENSIPUG00000011259	cpsf1	100	83.459	Ictalurus_punctatus
ENSSDUG00000001100	cpsf1	96	79.885	ENSSTOG00000009957	CPSF1	98	79.741	Ictidomys_tridecemlineatus
ENSSDUG00000001100	cpsf1	100	80.083	ENSJJAG00000023002	Cpsf1	100	79.736	Jaculus_jaculus
ENSSDUG00000001100	cpsf1	91	93.730	ENSKMAG00000001940	cpsf1	99	93.730	Kryptolebias_marmoratus
ENSSDUG00000001100	cpsf1	100	90.562	ENSLBEG00000003601	cpsf1	100	90.978	Labrus_bergylta
ENSSDUG00000001100	cpsf1	88	79.545	ENSLACG00000000233	CPSF1	100	67.773	Latimeria_chalumnae
ENSSDUG00000001100	cpsf1	100	83.172	ENSLOCG00000008484	cpsf1	100	83.517	Lepisosteus_oculatus
ENSSDUG00000001100	cpsf1	96	80.245	ENSLAFG00000022601	CPSF1	99	80.029	Loxodonta_africana
ENSSDUG00000001100	cpsf1	100	79.129	ENSMFAG00000037013	CPSF1	100	80.093	Macaca_fascicularis
ENSSDUG00000001100	cpsf1	100	79.749	ENSMMUG00000007380	CPSF1	100	80.093	Macaca_mulatta
ENSSDUG00000001100	cpsf1	96	80.187	ENSMNEG00000043564	CPSF1	100	80.093	Macaca_nemestrina
ENSSDUG00000001100	cpsf1	100	79.129	ENSMLEG00000043010	CPSF1	100	80.093	Mandrillus_leucophaeus
ENSSDUG00000001100	cpsf1	100	92.668	ENSMAMG00000003803	cpsf1	100	92.668	Mastacembelus_armatus
ENSSDUG00000001100	cpsf1	100	91.766	ENSMZEG00005001168	cpsf1	100	91.907	Maylandia_zebra
ENSSDUG00000001100	cpsf1	100	79.530	ENSMAUG00000003601	Cpsf1	100	79.461	Mesocricetus_auratus
ENSSDUG00000001100	cpsf1	100	79.461	ENSMICG00000015767	CPSF1	100	79.184	Microcebus_murinus
ENSSDUG00000001100	cpsf1	100	79.253	ENSMOCG00000022758	Cpsf1	100	78.907	Microtus_ochrogaster
ENSSDUG00000001100	cpsf1	100	94.196	ENSMMOG00000021245	cpsf1	100	94.196	Mola_mola
ENSSDUG00000001100	cpsf1	100	79.574	ENSMODG00000010755	CPSF1	100	79.505	Monodelphis_domestica
ENSSDUG00000001100	cpsf1	100	91.366	ENSMALG00000020545	cpsf1	100	91.298	Monopterus_albus
ENSSDUG00000001100	cpsf1	100	79.737	MGP_CAROLIEiJ_G0019936	Cpsf1	100	79.391	Mus_caroli
ENSSDUG00000001100	cpsf1	100	79.737	ENSMUSG00000034022	Cpsf1	100	79.391	Mus_musculus
ENSSDUG00000001100	cpsf1	100	79.737	MGP_PahariEiJ_G0019946	Cpsf1	100	79.391	Mus_pahari
ENSSDUG00000001100	cpsf1	100	79.806	MGP_SPRETEiJ_G0020839	Cpsf1	100	79.461	Mus_spretus
ENSSDUG00000001100	cpsf1	94	79.823	ENSMPUG00000006419	CPSF1	93	80.044	Mustela_putorius_furo
ENSSDUG00000001100	cpsf1	100	79.599	ENSNGAG00000022460	Cpsf1	100	79.253	Nannospalax_galili
ENSSDUG00000001100	cpsf1	100	88.174	ENSNBRG00000000813	cpsf1	100	88.640	Neolamprologus_brichardi
ENSSDUG00000001100	cpsf1	86	69.369	ENSNLEG00000010633	-	100	80.093	Nomascus_leucogenys
ENSSDUG00000001100	cpsf1	82	87.209	ENSMEUG00000014922	CPSF1	84	87.209	Notamacropus_eugenii
ENSSDUG00000001100	cpsf1	60	88.421	ENSOPRG00000004693	-	70	88.421	Ochotona_princeps
ENSSDUG00000001100	cpsf1	100	79.876	ENSODEG00000013995	CPSF1	100	79.599	Octodon_degus
ENSSDUG00000001100	cpsf1	100	93.490	ENSONIG00000007676	cpsf1	100	93.698	Oreochromis_niloticus
ENSSDUG00000001100	cpsf1	58	77.857	ENSOANG00000010716	CPSF1	89	77.857	Ornithorhynchus_anatinus
ENSSDUG00000001100	cpsf1	100	89.481	ENSORLG00000013544	cpsf1	100	89.276	Oryzias_latipes
ENSSDUG00000001100	cpsf1	100	89.481	ENSORLG00020021693	cpsf1	100	89.276	Oryzias_latipes_hni
ENSSDUG00000001100	cpsf1	100	89.481	ENSORLG00015009979	cpsf1	100	89.276	Oryzias_latipes_hsok
ENSSDUG00000001100	cpsf1	100	89.056	ENSOMEG00000011849	cpsf1	100	89.330	Oryzias_melastigma
ENSSDUG00000001100	cpsf1	100	79.820	ENSOGAG00000000315	CPSF1	100	79.544	Otolemur_garnettii
ENSSDUG00000001100	cpsf1	100	79.198	ENSPPAG00000019280	CPSF1	100	81.448	Pan_paniscus
ENSSDUG00000001100	cpsf1	100	77.853	ENSPTRG00000051253	-	100	81.448	Pan_troglodytes
ENSSDUG00000001100	cpsf1	100	79.198	ENSPTRG00000049288	-	100	81.448	Pan_troglodytes
ENSSDUG00000001100	cpsf1	96	80.187	ENSPANG00000015005	CPSF1	100	80.093	Papio_anubis
ENSSDUG00000001100	cpsf1	100	87.872	ENSPKIG00000002582	cpsf1	100	88.150	Paramormyrops_kingsleyae
ENSSDUG00000001100	cpsf1	100	79.711	ENSPCIG00000009035	CPSF1	100	79.642	Phascolarctos_cinereus
ENSSDUG00000001100	cpsf1	100	88.443	ENSPFOG00000012870	cpsf1	100	88.035	Poecilia_formosa
ENSSDUG00000001100	cpsf1	100	88.179	ENSPREG00000016307	cpsf1	100	88.382	Poecilia_reticulata
ENSSDUG00000001100	cpsf1	100	72.169	ENSPPYG00000018973	CPSF1	100	72.030	Pongo_abelii
ENSSDUG00000001100	cpsf1	91	84.943	ENSPCAG00000011541	CPSF1	93	84.943	Procavia_capensis
ENSSDUG00000001100	cpsf1	100	76.194	ENSPCOG00000020001	CPSF1	100	80.093	Propithecus_coquereli
ENSSDUG00000001100	cpsf1	90	88.000	ENSPVAG00000006761	CPSF1	91	88.000	Pteropus_vampyrus
ENSSDUG00000001100	cpsf1	100	93.084	ENSPNYG00000004906	cpsf1	100	93.223	Pundamilia_nyererei
ENSSDUG00000001100	cpsf1	100	84.480	ENSPNAG00000024395	cpsf1	100	84.480	Pygocentrus_nattereri
ENSSDUG00000001100	cpsf1	100	79.640	ENSRNOG00000030705	Cpsf1	100	79.294	Rattus_norvegicus
ENSSDUG00000001100	cpsf1	100	79.129	ENSRBIG00000044907	CPSF1	100	80.556	Rhinopithecus_bieti
ENSSDUG00000001100	cpsf1	100	79.198	ENSRROG00000044861	CPSF1	100	80.556	Rhinopithecus_roxellana
ENSSDUG00000001100	cpsf1	96	80.476	ENSSBOG00000027177	CPSF1	99	80.115	Saimiri_boliviensis_boliviensis
ENSSDUG00000001100	cpsf1	100	79.505	ENSSHAG00000006500	CPSF1	100	79.367	Sarcophilus_harrisii
ENSSDUG00000001100	cpsf1	100	85.793	ENSSFOG00015004606	cpsf1	100	88.574	Scleropages_formosus
ENSSDUG00000001100	cpsf1	100	91.434	ENSSMAG00000020547	cpsf1	100	91.502	Scophthalmus_maximus
ENSSDUG00000001100	cpsf1	100	99.507	ENSSLDG00000003619	cpsf1	100	99.507	Seriola_lalandi_dorsalis
ENSSDUG00000001100	cpsf1	89	76.329	ENSSARG00000003643	CPSF1	92	76.087	Sorex_araneus
ENSSDUG00000001100	cpsf1	96	82.459	ENSSPUG00000014396	CPSF1	99	82.315	Sphenodon_punctatus
ENSSDUG00000001100	cpsf1	100	92.255	ENSSPAG00000005349	cpsf1	100	92.188	Stegastes_partitus
ENSSDUG00000001100	cpsf1	100	78.300	ENSSSCG00000005906	CPSF1	100	78.093	Sus_scrofa
ENSSDUG00000001100	cpsf1	97	89.248	ENSTRUG00000013134	cpsf1	100	88.897	Takifugu_rubripes
ENSSDUG00000001100	cpsf1	100	89.766	ENSTNIG00000014027	cpsf1	100	89.698	Tetraodon_nigroviridis
ENSSDUG00000001100	cpsf1	77	74.913	ENSTBEG00000001756	CPSF1	91	74.913	Tupaia_belangeri
ENSSDUG00000001100	cpsf1	89	83.966	ENSTTRG00000001937	CPSF1	90	83.793	Tursiops_truncatus
ENSSDUG00000001100	cpsf1	96	80.245	ENSUAMG00000006476	CPSF1	97	79.957	Ursus_americanus
ENSSDUG00000001100	cpsf1	100	90.343	ENSXCOG00000003608	cpsf1	100	90.763	Xiphophorus_couchianus
ENSSDUG00000001100	cpsf1	100	89.874	ENSXMAG00000005798	cpsf1	100	90.084	Xiphophorus_maculatus