EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000001122 (Gene tree)
Gene ID: 111237189
Gene Symbol: rad54b
Alias: im:7137737|im:7153525
Full Name: RAD54 homolog B
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 21494 bases
Position: chrBDQW01000814.1:26884-48377
Accession: 111237189
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000001397	ResIII	PF04851.15	3.7e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000001452	-	6895	XM_022766177	ENSSDUP00000001397	952 (aa)	XP_022621898	-

Gene Model

Click here to download ENSSDUG00000001122's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03440	Homologous recombination	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000001122's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000001122	rad54b	52	32.290	ENSSDUG00000019831	chd1l	51	32.290
ENSSDUG00000001122	rad54b	50	31.081	ENSSDUG00000022338	smarcad1a	61	30.586
ENSSDUG00000001122	rad54b	61	46.610	ENSSDUG00000019147	rad54l	78	46.102

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000001122	rad54b	75	59.059	ENSG00000265817	FSBP	98	59.059	Homo_sapiens
ENSSDUG00000001122	rad54b	98	53.887	ENSG00000197275	RAD54B	99	54.091	Homo_sapiens
ENSSDUG00000001122	rad54b	98	54.313	ENSAMEG00000005834	-	99	54.313	Ailuropoda_melanoleuca
ENSSDUG00000001122	rad54b	85	88.991	ENSACIG00000013005	rad54b	92	88.991	Amphilophus_citrinellus
ENSSDUG00000001122	rad54b	96	85.355	ENSAOCG00000008523	rad54b	97	85.355	Amphiprion_ocellaris
ENSSDUG00000001122	rad54b	96	76.496	ENSAPEG00000001673	rad54b	97	76.496	Amphiprion_percula
ENSSDUG00000001122	rad54b	96	86.980	ENSATEG00000001527	rad54b	97	89.139	Anabas_testudineus
ENSSDUG00000001122	rad54b	98	56.734	ENSAPLG00000014366	-	99	56.151	Anas_platyrhynchos
ENSSDUG00000001122	rad54b	81	61.899	ENSACAG00000003671	-	95	61.899	Anolis_carolinensis
ENSSDUG00000001122	rad54b	66	60.625	ENSANAG00000019528	-	98	60.625	Aotus_nancymaae
ENSSDUG00000001122	rad54b	91	85.468	ENSACLG00000007826	rad54b	97	85.468	Astatotilapia_calliptera
ENSSDUG00000001122	rad54b	80	69.060	ENSAMXG00000039985	rad54b	91	69.060	Astyanax_mexicanus
ENSSDUG00000001122	rad54b	98	53.887	ENSBTAG00000000632	RAD54B	99	53.518	Bos_taurus
ENSSDUG00000001122	rad54b	76	35.600	WBGene00013792	Y116A8C.13	88	34.955	Caenorhabditis_elegans
ENSSDUG00000001122	rad54b	98	54.180	ENSCJAG00000000080	-	98	59.198	Callithrix_jacchus
ENSSDUG00000001122	rad54b	98	54.904	ENSCAFG00000009179	RAD54B	99	54.633	Canis_familiaris
ENSSDUG00000001122	rad54b	98	55.011	ENSCAFG00020012084	-	99	54.739	Canis_lupus_dingo
ENSSDUG00000001122	rad54b	98	53.674	ENSCHIG00000008230	-	99	53.674	Capra_hircus
ENSSDUG00000001122	rad54b	97	54.957	ENSTSYG00000013234	-	97	54.672	Carlito_syrichta
ENSSDUG00000001122	rad54b	98	53.659	ENSCPOG00000011643	-	99	53.838	Cavia_porcellus
ENSSDUG00000001122	rad54b	98	54.131	ENSCCAG00000011754	-	98	58.921	Cebus_capucinus
ENSSDUG00000001122	rad54b	98	53.968	ENSCATG00000030661	-	98	58.953	Cercocebus_atys
ENSSDUG00000001122	rad54b	98	53.781	ENSCLAG00000010476	-	99	53.715	Chinchilla_lanigera
ENSSDUG00000001122	rad54b	98	54.034	ENSCSAG00000012712	-	99	53.797	Chlorocebus_sabaeus
ENSSDUG00000001122	rad54b	98	56.854	ENSCPBG00000003204	-	98	58.094	Chrysemys_picta_bellii
ENSSDUG00000001122	rad54b	98	54.516	ENSCANG00000017939	-	98	59.557	Colobus_angolensis_palliatus
ENSSDUG00000001122	rad54b	87	58.801	ENSCGRG00001020184	Rad54b	93	58.801	Cricetulus_griseus_chok1gshd
ENSSDUG00000001122	rad54b	98	52.188	ENSCGRG00000016752	Rad54b	92	57.781	Cricetulus_griseus_crigri
ENSSDUG00000001122	rad54b	88	84.733	ENSCSEG00000001601	rad54b	96	84.733	Cynoglossus_semilaevis
ENSSDUG00000001122	rad54b	96	77.377	ENSCVAG00000009200	rad54b	97	77.377	Cyprinodon_variegatus
ENSSDUG00000001122	rad54b	96	61.874	ENSDARG00000092134	rad54b	95	70.178	Danio_rerio
ENSSDUG00000001122	rad54b	98	54.894	ENSDNOG00000015535	-	99	54.894	Dasypus_novemcinctus
ENSSDUG00000001122	rad54b	98	54.410	ENSDORG00000002492	Rad54b	99	53.651	Dipodomys_ordii
ENSSDUG00000001122	rad54b	86	57.022	ENSETEG00000010605	-	100	56.235	Echinops_telfairi
ENSSDUG00000001122	rad54b	96	47.059	ENSEBUG00000009104	rad54b	96	47.065	Eptatretus_burgeri
ENSSDUG00000001122	rad54b	82	59.316	ENSEASG00005004021	-	88	59.316	Equus_asinus_asinus
ENSSDUG00000001122	rad54b	98	53.846	ENSECAG00000021949	-	98	54.131	Equus_caballus
ENSSDUG00000001122	rad54b	66	52.740	ENSEEUG00000008056	-	69	52.740	Erinaceus_europaeus
ENSSDUG00000001122	rad54b	97	72.845	ENSELUG00000009287	rad54b	97	72.414	Esox_lucius
ENSSDUG00000001122	rad54b	98	54.497	ENSFCAG00000015513	-	98	59.835	Felis_catus
ENSSDUG00000001122	rad54b	98	56.310	ENSFALG00000005467	-	98	56.310	Ficedula_albicollis
ENSSDUG00000001122	rad54b	98	53.651	ENSFDAG00000020541	-	99	53.757	Fukomys_damarensis
ENSSDUG00000001122	rad54b	84	80.645	ENSFHEG00000014382	rad54b	87	80.645	Fundulus_heteroclitus
ENSSDUG00000001122	rad54b	80	82.399	ENSGMOG00000014774	rad54b	95	82.399	Gadus_morhua
ENSSDUG00000001122	rad54b	97	57.204	ENSGALG00000043597	RAD54B	97	57.204	Gallus_gallus
ENSSDUG00000001122	rad54b	97	81.630	ENSGAFG00000007901	rad54b	96	83.929	Gambusia_affinis
ENSSDUG00000001122	rad54b	96	79.585	ENSGACG00000009128	rad54b	97	79.280	Gasterosteus_aculeatus
ENSSDUG00000001122	rad54b	98	56.628	ENSGAGG00000018747	-	99	56.614	Gopherus_agassizii
ENSSDUG00000001122	rad54b	98	53.911	ENSGGOG00000023516	-	99	53.757	Gorilla_gorilla
ENSSDUG00000001122	rad54b	96	85.120	ENSHBUG00000016017	rad54b	96	85.120	Haplochromis_burtoni
ENSSDUG00000001122	rad54b	82	58.816	ENSHGLG00000008263	RAD54B	98	52.941	Heterocephalus_glaber_female
ENSSDUG00000001122	rad54b	98	52.237	ENSHGLG00100008108	-	98	52.296	Heterocephalus_glaber_male
ENSSDUG00000001122	rad54b	86	79.740	ENSHCOG00000004764	rad54b	95	76.874	Hippocampus_comes
ENSSDUG00000001122	rad54b	96	62.182	ENSIPUG00000018531	rad54b	96	61.970	Ictalurus_punctatus
ENSSDUG00000001122	rad54b	98	53.241	ENSSTOG00000010791	-	98	53.135	Ictidomys_tridecemlineatus
ENSSDUG00000001122	rad54b	98	53.022	ENSJJAG00000010314	Rad54b	85	58.935	Jaculus_jaculus
ENSSDUG00000001122	rad54b	79	83.069	ENSKMAG00000004744	rad54b	88	83.069	Kryptolebias_marmoratus
ENSSDUG00000001122	rad54b	77	63.401	ENSLACG00000000859	-	98	63.401	Latimeria_chalumnae
ENSSDUG00000001122	rad54b	97	63.053	ENSLOCG00000010100	rad54b	92	68.615	Lepisosteus_oculatus
ENSSDUG00000001122	rad54b	81	58.656	ENSLAFG00000015315	-	94	58.656	Loxodonta_africana
ENSSDUG00000001122	rad54b	98	53.862	ENSMFAG00000031629	-	98	58.815	Macaca_fascicularis
ENSSDUG00000001122	rad54b	98	53.862	ENSMMUG00000005659	-	99	53.862	Macaca_mulatta
ENSSDUG00000001122	rad54b	98	53.757	ENSMNEG00000016408	-	99	53.757	Macaca_nemestrina
ENSSDUG00000001122	rad54b	98	53.968	ENSMLEG00000006946	-	99	53.968	Mandrillus_leucophaeus
ENSSDUG00000001122	rad54b	90	86.403	ENSMAMG00000012269	rad54b	95	86.816	Mastacembelus_armatus
ENSSDUG00000001122	rad54b	96	85.011	ENSMZEG00005005281	rad54b	97	85.011	Maylandia_zebra
ENSSDUG00000001122	rad54b	97	56.559	ENSMGAG00000012024	-	97	56.559	Meleagris_gallopavo
ENSSDUG00000001122	rad54b	98	53.820	ENSMAUG00000013586	Rad54b	99	52.772	Mesocricetus_auratus
ENSSDUG00000001122	rad54b	82	59.490	ENSMICG00000000754	-	89	59.490	Microcebus_murinus
ENSSDUG00000001122	rad54b	82	59.694	ENSMOCG00000020035	Rad54b	87	59.566	Microtus_ochrogaster
ENSSDUG00000001122	rad54b	88	86.392	ENSMMOG00000003394	rad54b	94	86.392	Mola_mola
ENSSDUG00000001122	rad54b	83	58.177	ENSMODG00000007343	-	98	58.177	Monodelphis_domestica
ENSSDUG00000001122	rad54b	64	87.602	ENSMALG00000001520	rad54b	95	87.602	Monopterus_albus
ENSSDUG00000001122	rad54b	97	54.565	MGP_CAROLIEiJ_G0025810	Rad54b	97	54.243	Mus_caroli
ENSSDUG00000001122	rad54b	97	54.243	ENSMUSG00000078773	Rad54b	97	54.135	Mus_musculus
ENSSDUG00000001122	rad54b	97	54.369	MGP_PahariEiJ_G0023933	Rad54b	97	54.369	Mus_pahari
ENSSDUG00000001122	rad54b	97	54.322	MGP_SPRETEiJ_G0026758	Rad54b	97	54.109	Mus_spretus
ENSSDUG00000001122	rad54b	82	59.873	ENSMPUG00000008878	-	96	59.873	Mustela_putorius_furo
ENSSDUG00000001122	rad54b	98	53.781	ENSMLUG00000008953	-	99	53.425	Myotis_lucifugus
ENSSDUG00000001122	rad54b	98	53.340	ENSNGAG00000017537	Rad54b	99	53.602	Nannospalax_galili
ENSSDUG00000001122	rad54b	91	85.345	ENSNBRG00000013394	rad54b	97	85.345	Neolamprologus_brichardi
ENSSDUG00000001122	rad54b	98	53.814	ENSNLEG00000003062	-	98	58.735	Nomascus_leucogenys
ENSSDUG00000001122	rad54b	66	61.893	ENSMEUG00000012426	-	68	61.893	Notamacropus_eugenii
ENSSDUG00000001122	rad54b	98	54.083	ENSODEG00000019564	-	99	53.659	Octodon_degus
ENSSDUG00000001122	rad54b	75	70.455	ENSODEG00000002650	-	94	70.455	Octodon_degus
ENSSDUG00000001122	rad54b	96	85.777	ENSONIG00000006067	rad54b	97	85.777	Oreochromis_niloticus
ENSSDUG00000001122	rad54b	78	60.667	ENSOANG00000011348	-	98	60.667	Ornithorhynchus_anatinus
ENSSDUG00000001122	rad54b	98	54.681	ENSOCUG00000016478	-	99	54.362	Oryctolagus_cuniculus
ENSSDUG00000001122	rad54b	96	79.913	ENSORLG00000008918	rad54b	95	86.364	Oryzias_latipes
ENSSDUG00000001122	rad54b	64	86.526	ENSORLG00020012171	rad54b	95	86.526	Oryzias_latipes_hni
ENSSDUG00000001122	rad54b	96	79.498	ENSORLG00015018536	rad54b	97	79.498	Oryzias_latipes_hsok
ENSSDUG00000001122	rad54b	78	84.791	ENSOMEG00000004345	rad54b	96	84.791	Oryzias_melastigma
ENSSDUG00000001122	rad54b	98	52.553	ENSOGAG00000007854	-	99	52.660	Otolemur_garnettii
ENSSDUG00000001122	rad54b	82	59.772	ENSOARG00000007691	-	96	59.772	Ovis_aries
ENSSDUG00000001122	rad54b	98	52.598	ENSPPAG00000029572	-	99	52.804	Pan_paniscus
ENSSDUG00000001122	rad54b	98	54.237	ENSPPRG00000007571	-	98	59.697	Panthera_pardus
ENSSDUG00000001122	rad54b	75	59.697	ENSPTIG00000012670	-	98	59.697	Panthera_tigris_altaica
ENSSDUG00000001122	rad54b	98	53.659	ENSPTRG00000020427	-	98	58.597	Pan_troglodytes
ENSSDUG00000001122	rad54b	98	53.968	ENSPANG00000019566	-	99	53.968	Papio_anubis
ENSSDUG00000001122	rad54b	96	64.464	ENSPKIG00000014974	rad54b	96	63.922	Paramormyrops_kingsleyae
ENSSDUG00000001122	rad54b	98	56.582	ENSPSIG00000002383	-	95	62.183	Pelodiscus_sinensis
ENSSDUG00000001122	rad54b	98	53.185	ENSPEMG00000012133	Rad54b	93	59.137	Peromyscus_maniculatus_bairdii
ENSSDUG00000001122	rad54b	80	59.274	ENSPMAG00000002916	rad54b	95	59.663	Petromyzon_marinus
ENSSDUG00000001122	rad54b	82	59.745	ENSPCIG00000020151	-	91	59.236	Phascolarctos_cinereus
ENSSDUG00000001122	rad54b	96	81.570	ENSPFOG00000023411	rad54b	97	81.352	Poecilia_formosa
ENSSDUG00000001122	rad54b	97	81.020	ENSPLAG00000010430	rad54b	97	81.134	Poecilia_latipinna
ENSSDUG00000001122	rad54b	97	81.453	ENSPMEG00000016873	rad54b	96	82.962	Poecilia_mexicana
ENSSDUG00000001122	rad54b	97	81.887	ENSPREG00000018443	rad54b	97	81.887	Poecilia_reticulata
ENSSDUG00000001122	rad54b	98	53.871	ENSPPYG00000018750	-	99	53.651	Pongo_abelii
ENSSDUG00000001122	rad54b	98	53.919	ENSPCOG00000026845	-	98	58.678	Propithecus_coquereli
ENSSDUG00000001122	rad54b	77	58.412	ENSPVAG00000000261	-	85	58.412	Pteropus_vampyrus
ENSSDUG00000001122	rad54b	81	85.494	ENSPNYG00000018303	rad54b	93	85.494	Pundamilia_nyererei
ENSSDUG00000001122	rad54b	96	62.054	ENSPNAG00000000295	rad54b	96	61.714	Pygocentrus_nattereri
ENSSDUG00000001122	rad54b	97	53.987	ENSRNOG00000039949	Rad54b	97	53.879	Rattus_norvegicus
ENSSDUG00000001122	rad54b	98	54.343	ENSRBIG00000020419	-	99	54.343	Rhinopithecus_bieti
ENSSDUG00000001122	rad54b	98	54.343	ENSRROG00000039897	-	99	54.343	Rhinopithecus_roxellana
ENSSDUG00000001122	rad54b	79	37.055	YBR073W	RDH54	84	36.449	Saccharomyces_cerevisiae
ENSSDUG00000001122	rad54b	98	54.051	ENSSBOG00000028501	-	99	54.051	Saimiri_boliviensis_boliviensis
ENSSDUG00000001122	rad54b	98	54.526	ENSSHAG00000017038	-	99	54.207	Sarcophilus_harrisii
ENSSDUG00000001122	rad54b	60	72.183	ENSSFOG00015008483	rad54b	89	72.183	Scleropages_formosus
ENSSDUG00000001122	rad54b	96	88.743	ENSSMAG00000018659	rad54b	97	88.743	Scophthalmus_maximus
ENSSDUG00000001122	rad54b	97	99.021	ENSSLDG00000013787	rad54b	97	99.021	Seriola_lalandi_dorsalis
ENSSDUG00000001122	rad54b	86	62.259	ENSSPUG00000016497	-	92	62.259	Sphenodon_punctatus
ENSSDUG00000001122	rad54b	96	79.344	ENSSPAG00000012800	rad54b	97	79.344	Stegastes_partitus
ENSSDUG00000001122	rad54b	98	53.092	ENSSSCG00000006101	-	97	58.981	Sus_scrofa
ENSSDUG00000001122	rad54b	96	56.494	ENSTGUG00000011880	-	97	56.230	Taeniopygia_guttata
ENSSDUG00000001122	rad54b	96	80.219	ENSTRUG00000010015	rad54b	97	80.219	Takifugu_rubripes
ENSSDUG00000001122	rad54b	98	50.000	ENSTTRG00000006312	-	85	55.414	Tursiops_truncatus
ENSSDUG00000001122	rad54b	98	54.255	ENSUMAG00000016401	-	99	54.255	Ursus_maritimus
ENSSDUG00000001122	rad54b	98	54.083	ENSVPAG00000003157	-	86	59.949	Vicugna_pacos
ENSSDUG00000001122	rad54b	96	47.273	ENSXETG00000025924	rad54b	95	53.521	Xenopus_tropicalis
ENSSDUG00000001122	rad54b	94	83.563	ENSXMAG00000013141	rad54b	95	83.965	Xiphophorus_maculatus