EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000001263 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 2005 bases
Position: chrBDQW01001090.1:145508-147512
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000001644	zf-C2H2	PF00096.26	4.4e-22	1	4
ENSSDUP00000001644	zf-C2H2	PF00096.26	4.4e-22	2	4
ENSSDUP00000001644	zf-C2H2	PF00096.26	4.4e-22	3	4
ENSSDUP00000001644	zf-C2H2	PF00096.26	4.4e-22	4	4
ENSSDUP00000001644	zf-met	PF12874.7	1.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000001701	-	678	-	ENSSDUP00000001644	225 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000001263's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000001263's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000001263	-	94	37.736	ENSSDUG00000019932	ZNF319	86	37.736
ENSSDUG00000001263	-	95	53.846	ENSSDUG00000009439	-	94	53.846
ENSSDUG00000001263	-	92	51.955	ENSSDUG00000009577	-	69	52.593
ENSSDUG00000001263	-	99	41.463	ENSSDUG00000016450	-	52	41.463
ENSSDUG00000001263	-	95	46.707	ENSSDUG00000000799	-	70	46.707
ENSSDUG00000001263	-	87	42.169	ENSSDUG00000004892	-	89	42.169
ENSSDUG00000001263	-	80	36.842	ENSSDUG00000018060	snai2	51	36.842
ENSSDUG00000001263	-	96	43.357	ENSSDUG00000000695	-	74	43.357
ENSSDUG00000001263	-	94	56.934	ENSSDUG00000005401	-	84	53.804
ENSSDUG00000001263	-	95	52.582	ENSSDUG00000015191	-	90	54.891
ENSSDUG00000001263	-	92	45.833	ENSSDUG00000015013	-	59	45.833
ENSSDUG00000001263	-	87	53.390	ENSSDUG00000004650	-	98	53.390
ENSSDUG00000001263	-	98	54.749	ENSSDUG00000015182	-	70	54.749
ENSSDUG00000001263	-	90	39.855	ENSSDUG00000012926	-	69	39.855
ENSSDUG00000001263	-	90	35.780	ENSSDUG00000010305	-	59	35.780
ENSSDUG00000001263	-	95	46.835	ENSSDUG00000011244	-	78	46.835
ENSSDUG00000001263	-	90	43.011	ENSSDUG00000002488	-	61	43.011
ENSSDUG00000001263	-	96	41.262	ENSSDUG00000023764	-	96	52.727
ENSSDUG00000001263	-	97	48.936	ENSSDUG00000023765	-	72	48.936
ENSSDUG00000001263	-	98	50.360	ENSSDUG00000015254	-	90	50.360
ENSSDUG00000001263	-	93	47.403	ENSSDUG00000004835	-	69	47.403
ENSSDUG00000001263	-	92	50.617	ENSSDUG00000015622	-	82	50.617
ENSSDUG00000001263	-	92	55.000	ENSSDUG00000008682	-	61	55.000
ENSSDUG00000001263	-	81	46.012	ENSSDUG00000020805	-	85	46.012
ENSSDUG00000001263	-	95	52.201	ENSSDUG00000006426	-	95	52.201
ENSSDUG00000001263	-	92	57.246	ENSSDUG00000009421	-	82	57.246
ENSSDUG00000001263	-	64	36.145	ENSSDUG00000020419	-	93	36.145
ENSSDUG00000001263	-	98	52.294	ENSSDUG00000006740	-	58	52.294
ENSSDUG00000001263	-	95	51.471	ENSSDUG00000015204	-	93	51.471
ENSSDUG00000001263	-	83	56.471	ENSSDUG00000004867	-	96	56.471
ENSSDUG00000001263	-	90	40.000	ENSSDUG00000020397	prdm5	73	41.606
ENSSDUG00000001263	-	91	46.948	ENSSDUG00000000786	-	92	51.807
ENSSDUG00000001263	-	91	45.333	ENSSDUG00000020788	-	62	45.109
ENSSDUG00000001263	-	92	44.295	ENSSDUG00000000705	-	59	44.295
ENSSDUG00000001263	-	97	45.263	ENSSDUG00000011170	znf236	51	45.263
ENSSDUG00000001263	-	93	41.259	ENSSDUG00000014574	znf526	53	41.259
ENSSDUG00000001263	-	95	46.763	ENSSDUG00000016734	-	54	46.763
ENSSDUG00000001263	-	96	43.850	ENSSDUG00000004089	-	96	37.004
ENSSDUG00000001263	-	99	54.676	ENSSDUG00000009534	-	69	54.676
ENSSDUG00000001263	-	79	43.226	ENSSDUG00000011604	gfi1b	52	43.226
ENSSDUG00000001263	-	86	44.886	ENSSDUG00000006808	-	72	44.886
ENSSDUG00000001263	-	98	50.318	ENSSDUG00000015159	-	84	50.318
ENSSDUG00000001263	-	91	54.891	ENSSDUG00000009563	-	69	54.891
ENSSDUG00000001263	-	97	43.820	ENSSDUG00000000946	-	99	43.258
ENSSDUG00000001263	-	99	45.455	ENSSDUG00000002174	-	67	45.455
ENSSDUG00000001263	-	96	54.913	ENSSDUG00000008943	-	86	55.978
ENSSDUG00000001263	-	95	46.341	ENSSDUG00000020810	-	68	46.341
ENSSDUG00000001263	-	96	59.239	ENSSDUG00000009601	-	90	52.830
ENSSDUG00000001263	-	77	44.805	ENSSDUG00000022914	-	50	44.805
ENSSDUG00000001263	-	96	40.741	ENSSDUG00000022412	znf648	58	40.741
ENSSDUG00000001263	-	90	41.429	ENSSDUG00000013904	-	62	41.429
ENSSDUG00000001263	-	91	52.201	ENSSDUG00000009553	-	54	52.201
ENSSDUG00000001263	-	98	37.107	ENSSDUG00000003003	znf319b	81	37.107
ENSSDUG00000001263	-	80	38.060	ENSSDUG00000007752	scrt1b	51	38.060
ENSSDUG00000001263	-	94	42.857	ENSSDUG00000006463	-	87	42.857
ENSSDUG00000001263	-	95	57.592	ENSSDUG00000007336	-	89	58.511
ENSSDUG00000001263	-	96	47.143	ENSSDUG00000002195	-	99	48.235
ENSSDUG00000001263	-	80	42.727	ENSSDUG00000000889	-	75	42.727
ENSSDUG00000001263	-	93	52.151	ENSSDUG00000005323	-	91	52.151
ENSSDUG00000001263	-	92	39.815	ENSSDUG00000002675	znf646	58	39.815
ENSSDUG00000001263	-	80	45.732	ENSSDUG00000020595	-	86	45.732

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000001263	-	87	54.082	ENSAPOG00000005767	-	100	54.082	Acanthochromis_polyacanthus
ENSSDUG00000001263	-	94	54.745	ENSAOCG00000000570	-	64	54.745	Amphiprion_ocellaris
ENSSDUG00000001263	-	84	50.289	ENSAPEG00000018796	-	79	50.289	Amphiprion_percula
ENSSDUG00000001263	-	97	40.782	ENSCVAG00000018507	-	71	41.463	Cyprinodon_variegatus
ENSSDUG00000001263	-	82	40.606	ENSFHEG00000022534	-	78	40.606	Fundulus_heteroclitus
ENSSDUG00000001263	-	95	49.045	ENSKMAG00000013745	-	64	49.045	Kryptolebias_marmoratus
ENSSDUG00000001263	-	94	52.601	ENSMAMG00000018114	-	78	52.601	Mastacembelus_armatus
ENSSDUG00000001263	-	86	42.328	ENSMAMG00000009817	-	87	46.875	Mastacembelus_armatus
ENSSDUG00000001263	-	92	50.000	ENSMZEG00005016808	-	80	53.261	Maylandia_zebra
ENSSDUG00000001263	-	97	54.375	ENSMALG00000004579	-	94	54.375	Monopterus_albus
ENSSDUG00000001263	-	92	48.718	ENSMALG00000012757	-	93	48.718	Monopterus_albus
ENSSDUG00000001263	-	93	53.459	ENSMALG00000001085	-	89	53.459	Monopterus_albus
ENSSDUG00000001263	-	93	52.542	ENSMALG00000008930	-	86	45.029	Monopterus_albus
ENSSDUG00000001263	-	92	50.259	ENSMALG00000012116	-	95	50.259	Monopterus_albus
ENSSDUG00000001263	-	88	47.343	ENSNBRG00000013501	-	76	47.343	Neolamprologus_brichardi
ENSSDUG00000001263	-	99	43.333	ENSOMEG00000021420	-	62	43.333	Oryzias_melastigma
ENSSDUG00000001263	-	94	38.788	ENSPREG00000014898	-	63	38.788	Poecilia_reticulata
ENSSDUG00000001263	-	98	46.784	ENSPNYG00000007756	-	74	47.368	Pundamilia_nyererei
ENSSDUG00000001263	-	84	41.451	ENSSLDG00000023661	-	88	41.451	Seriola_lalandi_dorsalis
ENSSDUG00000001263	-	93	53.927	ENSTRUG00000012273	-	77	53.927	Takifugu_rubripes
ENSSDUG00000001263	-	84	50.000	ENSTRUG00000022919	-	67	49.457	Takifugu_rubripes
ENSSDUG00000001263	-	85	55.172	ENSTRUG00000023925	-	60	55.172	Takifugu_rubripes
ENSSDUG00000001263	-	80	54.762	ENSTRUG00000003111	-	84	54.762	Takifugu_rubripes
ENSSDUG00000001263	-	96	48.469	ENSTRUG00000001268	-	87	51.701	Takifugu_rubripes
ENSSDUG00000001263	-	88	52.174	ENSTRUG00000022206	-	55	50.758	Takifugu_rubripes
ENSSDUG00000001263	-	95	53.927	ENSTNIG00000005856	-	99	53.927	Tetraodon_nigroviridis
ENSSDUG00000001263	-	98	48.252	ENSXCOG00000019492	-	90	48.252	Xiphophorus_couchianus
ENSSDUG00000001263	-	91	46.795	ENSXMAG00000022297	-	99	46.795	Xiphophorus_maculatus