EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000001324 (Gene tree)
Gene ID: 111227514
Gene Symbol: prpf38a
Alias: fa04h11|fc83e08|wu:fa04h11|wu:fc83e08|zgc:92059
Full Name: pre-mRNA processing factor 38A
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 5028 bases
Position: chrBDQW01000189.1:3880184-3885211
Accession: 111227514
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000001671	PRP38	PF03371.15	4.1e-63	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000001731	-	1051	XM_022753038	ENSSDUP00000001671	309 (aa)	XP_022608759	UPI000BBE68E6

Gene Model

Click here to download ENSSDUG00000001324's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000001324's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000001324	prpf38a	100	82.109	ENSG00000134748	PRPF38A	71	89.140	Homo_sapiens
ENSSDUG00000001324	prpf38a	100	98.058	ENSAPOG00000011652	prpf38a	100	98.058	Acanthochromis_polyacanthus
ENSSDUG00000001324	prpf38a	100	82.109	ENSAMEG00000009319	PRPF38A	71	89.140	Ailuropoda_melanoleuca
ENSSDUG00000001324	prpf38a	100	93.204	ENSACIG00000012292	prpf38a	100	93.204	Amphilophus_citrinellus
ENSSDUG00000001324	prpf38a	100	98.058	ENSAOCG00000018004	prpf38a	100	98.058	Amphiprion_ocellaris
ENSSDUG00000001324	prpf38a	100	98.058	ENSAPEG00000021414	prpf38a	100	98.058	Amphiprion_percula
ENSSDUG00000001324	prpf38a	72	94.570	ENSATEG00000004608	prpf38a	72	94.570	Anabas_testudineus
ENSSDUG00000001324	prpf38a	79	77.823	ENSAPLG00000005827	PRPF38A	63	85.256	Anas_platyrhynchos
ENSSDUG00000001324	prpf38a	100	81.789	ENSACAG00000008249	PRPF38A	71	88.688	Anolis_carolinensis
ENSSDUG00000001324	prpf38a	100	60.317	ENSANAG00000029204	-	70	56.444	Aotus_nancymaae
ENSSDUG00000001324	prpf38a	100	82.109	ENSANAG00000027839	PRPF38A	71	89.140	Aotus_nancymaae
ENSSDUG00000001324	prpf38a	100	96.440	ENSACLG00000021595	prpf38a	100	96.440	Astatotilapia_calliptera
ENSSDUG00000001324	prpf38a	100	94.569	ENSAMXG00000029274	prpf38a	100	94.569	Astyanax_mexicanus
ENSSDUG00000001324	prpf38a	100	82.109	ENSBTAG00000002720	PRPF38A	75	89.140	Bos_taurus
ENSSDUG00000001324	prpf38a	63	63.590	WBGene00008380	prp-38	68	60.274	Caenorhabditis_elegans
ENSSDUG00000001324	prpf38a	100	82.109	ENSCJAG00000021594	PRPF38A	74	89.140	Callithrix_jacchus
ENSSDUG00000001324	prpf38a	100	82.109	ENSCAFG00000003740	PRPF38A	71	89.140	Canis_familiaris
ENSSDUG00000001324	prpf38a	100	82.109	ENSCAFG00020010939	PRPF38A	71	89.140	Canis_lupus_dingo
ENSSDUG00000001324	prpf38a	100	82.109	ENSCHIG00000024730	PRPF38A	71	89.140	Capra_hircus
ENSSDUG00000001324	prpf38a	100	82.109	ENSTSYG00000009868	-	71	89.140	Carlito_syrichta
ENSSDUG00000001324	prpf38a	86	78.519	ENSTSYG00000031994	-	63	85.955	Carlito_syrichta
ENSSDUG00000001324	prpf38a	100	83.601	ENSCPOG00000005079	PRPF38A	71	89.140	Cavia_porcellus
ENSSDUG00000001324	prpf38a	75	88.312	ENSCCAG00000026502	PRPF38A	71	89.140	Cebus_capucinus
ENSSDUG00000001324	prpf38a	93	53.287	ENSCATG00000044190	-	57	55.851	Cercocebus_atys
ENSSDUG00000001324	prpf38a	100	82.109	ENSCATG00000032296	PRPF38A	71	89.140	Cercocebus_atys
ENSSDUG00000001324	prpf38a	100	82.109	ENSCLAG00000005816	PRPF38A	71	89.140	Chinchilla_lanigera
ENSSDUG00000001324	prpf38a	100	81.789	ENSCPBG00000014791	PRPF38A	71	88.688	Chrysemys_picta_bellii
ENSSDUG00000001324	prpf38a	75	68.831	ENSCSAVG00000009580	-	71	70.968	Ciona_savignyi
ENSSDUG00000001324	prpf38a	75	88.312	ENSCANG00000032608	PRPF38A	74	89.140	Colobus_angolensis_palliatus
ENSSDUG00000001324	prpf38a	84	71.648	ENSCGRG00001002557	-	74	75.113	Cricetulus_griseus_chok1gshd
ENSSDUG00000001324	prpf38a	100	82.109	ENSCGRG00001018502	-	71	89.140	Cricetulus_griseus_chok1gshd
ENSSDUG00000001324	prpf38a	100	82.109	ENSCGRG00000014868	Prpf38a	71	89.140	Cricetulus_griseus_crigri
ENSSDUG00000001324	prpf38a	72	93.665	ENSCSEG00000001269	prpf38a	76	93.665	Cynoglossus_semilaevis
ENSSDUG00000001324	prpf38a	100	97.411	ENSCVAG00000012305	prpf38a	100	97.411	Cyprinodon_variegatus
ENSSDUG00000001324	prpf38a	100	85.304	ENSDARG00000039213	prpf38a	71	95.023	Danio_rerio
ENSSDUG00000001324	prpf38a	100	82.109	ENSDNOG00000042326	PRPF38A	72	89.140	Dasypus_novemcinctus
ENSSDUG00000001324	prpf38a	84	76.046	ENSDORG00000023691	-	75	81.651	Dipodomys_ordii
ENSSDUG00000001324	prpf38a	85	97.917	ENSDORG00000023857	-	64	97.917	Dipodomys_ordii
ENSSDUG00000001324	prpf38a	84	76.046	ENSDORG00000025371	-	75	81.651	Dipodomys_ordii
ENSSDUG00000001324	prpf38a	77	81.590	ENSEBUG00000012588	prpf38a	71	81.166	Eptatretus_burgeri
ENSSDUG00000001324	prpf38a	100	82.109	ENSEASG00005014427	PRPF38A	71	89.140	Equus_asinus_asinus
ENSSDUG00000001324	prpf38a	100	82.109	ENSECAG00000022628	PRPF38A	71	89.140	Equus_caballus
ENSSDUG00000001324	prpf38a	100	96.764	ENSELUG00000021094	prpf38a	100	96.764	Esox_lucius
ENSSDUG00000001324	prpf38a	100	82.109	ENSFCAG00000002518	PRPF38A	71	89.140	Felis_catus
ENSSDUG00000001324	prpf38a	87	79.044	ENSFALG00000005598	-	66	86.111	Ficedula_albicollis
ENSSDUG00000001324	prpf38a	99	75.806	ENSFALG00000003612	-	73	83.486	Ficedula_albicollis
ENSSDUG00000001324	prpf38a	100	83.280	ENSFDAG00000011287	PRPF38A	72	89.140	Fukomys_damarensis
ENSSDUG00000001324	prpf38a	95	96.271	ENSFHEG00000014317	prpf38a	100	96.271	Fundulus_heteroclitus
ENSSDUG00000001324	prpf38a	54	98.795	ENSGMOG00000011384	prpf38a	54	98.795	Gadus_morhua
ENSSDUG00000001324	prpf38a	100	81.789	ENSGALG00000010627	PRPF38A	71	88.688	Gallus_gallus
ENSSDUG00000001324	prpf38a	100	96.440	ENSGAFG00000012422	prpf38a	100	96.440	Gambusia_affinis
ENSSDUG00000001324	prpf38a	72	94.619	ENSGACG00000005423	prpf38a	100	95.498	Gasterosteus_aculeatus
ENSSDUG00000001324	prpf38a	54	94.706	ENSGACG00000000182	-	100	94.706	Gasterosteus_aculeatus
ENSSDUG00000001324	prpf38a	100	81.789	ENSGAGG00000020547	PRPF38A	71	88.688	Gopherus_agassizii
ENSSDUG00000001324	prpf38a	100	82.109	ENSGGOG00000003940	PRPF38A	71	89.140	Gorilla_gorilla
ENSSDUG00000001324	prpf38a	66	96.552	ENSHBUG00000020572	prpf38a	86	96.552	Haplochromis_burtoni
ENSSDUG00000001324	prpf38a	100	82.109	ENSHGLG00000000475	PRPF38A	71	89.140	Heterocephalus_glaber_female
ENSSDUG00000001324	prpf38a	100	74.598	ENSHGLG00000007918	-	71	76.923	Heterocephalus_glaber_female
ENSSDUG00000001324	prpf38a	100	82.109	ENSHGLG00100008935	PRPF38A	71	89.140	Heterocephalus_glaber_male
ENSSDUG00000001324	prpf38a	100	74.598	ENSHGLG00100003928	-	71	76.923	Heterocephalus_glaber_male
ENSSDUG00000001324	prpf38a	59	93.956	ENSHCOG00000020781	prpf38a	59	94.149	Hippocampus_comes
ENSSDUG00000001324	prpf38a	90	80.702	ENSIPUG00000005757	prpf38a	71	94.144	Ictalurus_punctatus
ENSSDUG00000001324	prpf38a	100	82.109	ENSSTOG00000015610	PRPF38A	71	89.140	Ictidomys_tridecemlineatus
ENSSDUG00000001324	prpf38a	100	81.470	ENSJJAG00000015811	Prpf38a	71	88.235	Jaculus_jaculus
ENSSDUG00000001324	prpf38a	100	97.087	ENSKMAG00000006588	prpf38a	100	97.087	Kryptolebias_marmoratus
ENSSDUG00000001324	prpf38a	100	96.764	ENSLBEG00000020585	prpf38a	100	96.764	Labrus_bergylta
ENSSDUG00000001324	prpf38a	100	81.470	ENSLACG00000011495	PRPF38A	71	87.330	Latimeria_chalumnae
ENSSDUG00000001324	prpf38a	100	92.903	ENSLOCG00000006262	prpf38a	72	90.991	Lepisosteus_oculatus
ENSSDUG00000001324	prpf38a	100	82.109	ENSLAFG00000025862	PRPF38A	71	89.140	Loxodonta_africana
ENSSDUG00000001324	prpf38a	100	82.109	ENSMFAG00000039449	PRPF38A	74	89.140	Macaca_fascicularis
ENSSDUG00000001324	prpf38a	87	79.412	ENSMMUG00000014333	PRPF38A	65	86.188	Macaca_mulatta
ENSSDUG00000001324	prpf38a	93	53.287	ENSMNEG00000040242	-	65	57.971	Macaca_nemestrina
ENSSDUG00000001324	prpf38a	100	82.109	ENSMNEG00000031221	PRPF38A	71	89.140	Macaca_nemestrina
ENSSDUG00000001324	prpf38a	100	82.109	ENSMLEG00000041105	PRPF38A	71	89.140	Mandrillus_leucophaeus
ENSSDUG00000001324	prpf38a	100	98.058	ENSMAMG00000015431	prpf38a	100	98.058	Mastacembelus_armatus
ENSSDUG00000001324	prpf38a	100	96.440	ENSMZEG00005017838	prpf38a	100	96.440	Maylandia_zebra
ENSSDUG00000001324	prpf38a	75	87.879	ENSMGAG00000011176	PRPF38A	74	88.688	Meleagris_gallopavo
ENSSDUG00000001324	prpf38a	85	83.333	ENSMAUG00000018029	-	84	84.615	Mesocricetus_auratus
ENSSDUG00000001324	prpf38a	100	82.109	ENSMICG00000014193	PRPF38A	71	89.140	Microcebus_murinus
ENSSDUG00000001324	prpf38a	100	82.109	ENSMOCG00000013080	Prpf38a	71	89.140	Microtus_ochrogaster
ENSSDUG00000001324	prpf38a	100	94.534	ENSMMOG00000016972	prpf38a	100	94.534	Mola_mola
ENSSDUG00000001324	prpf38a	100	79.936	ENSMODG00000000644	PRPF38A	71	86.036	Monodelphis_domestica
ENSSDUG00000001324	prpf38a	100	98.382	ENSMALG00000019363	prpf38a	97	98.382	Monopterus_albus
ENSSDUG00000001324	prpf38a	100	81.789	MGP_CAROLIEiJ_G0026269	Prpf38a	71	88.688	Mus_caroli
ENSSDUG00000001324	prpf38a	100	81.789	ENSMUSG00000063800	Prpf38a	71	88.688	Mus_musculus
ENSSDUG00000001324	prpf38a	100	81.789	MGP_PahariEiJ_G0028602	Prpf38a	71	88.688	Mus_pahari
ENSSDUG00000001324	prpf38a	100	81.470	MGP_SPRETEiJ_G0027238	Prpf38a	93	92.553	Mus_spretus
ENSSDUG00000001324	prpf38a	100	82.109	ENSMPUG00000006896	PRPF38A	71	89.140	Mustela_putorius_furo
ENSSDUG00000001324	prpf38a	100	83.923	ENSNGAG00000011884	Prpf38a	72	89.140	Nannospalax_galili
ENSSDUG00000001324	prpf38a	100	94.175	ENSNBRG00000004013	prpf38a	71	94.144	Neolamprologus_brichardi
ENSSDUG00000001324	prpf38a	97	63.158	ENSNLEG00000012592	-	67	58.824	Nomascus_leucogenys
ENSSDUG00000001324	prpf38a	93	81.034	ENSNLEG00000017999	PRPF38A	63	88.384	Nomascus_leucogenys
ENSSDUG00000001324	prpf38a	93	56.014	ENSNLEG00000033398	-	60	51.142	Nomascus_leucogenys
ENSSDUG00000001324	prpf38a	100	79.233	ENSMEUG00000003860	PRPF38A	71	85.068	Notamacropus_eugenii
ENSSDUG00000001324	prpf38a	74	88.596	ENSOPRG00000008985	PRPF38A	92	89.140	Ochotona_princeps
ENSSDUG00000001324	prpf38a	100	82.109	ENSODEG00000005869	PRPF38A	71	89.140	Octodon_degus
ENSSDUG00000001324	prpf38a	100	96.117	ENSONIG00000007816	prpf38a	100	96.117	Oreochromis_niloticus
ENSSDUG00000001324	prpf38a	75	45.064	ENSOANG00000009541	-	71	43.750	Ornithorhynchus_anatinus
ENSSDUG00000001324	prpf38a	100	82.109	ENSOCUG00000000963	PRPF38A	71	89.140	Oryctolagus_cuniculus
ENSSDUG00000001324	prpf38a	99	96.753	ENSORLG00000013485	prpf38a	99	96.753	Oryzias_latipes
ENSSDUG00000001324	prpf38a	99	96.753	ENSORLG00020002130	prpf38a	99	96.753	Oryzias_latipes_hni
ENSSDUG00000001324	prpf38a	99	96.429	ENSORLG00015021393	prpf38a	99	96.429	Oryzias_latipes_hsok
ENSSDUG00000001324	prpf38a	100	95.793	ENSOMEG00000016333	prpf38a	72	95.475	Oryzias_melastigma
ENSSDUG00000001324	prpf38a	100	82.109	ENSOGAG00000005423	PRPF38A	71	89.140	Otolemur_garnettii
ENSSDUG00000001324	prpf38a	100	82.109	ENSOARG00000005373	PRPF38A	71	89.140	Ovis_aries
ENSSDUG00000001324	prpf38a	100	82.109	ENSPPAG00000030905	PRPF38A	71	89.140	Pan_paniscus
ENSSDUG00000001324	prpf38a	93	69.072	ENSPPAG00000033867	-	68	70.136	Pan_paniscus
ENSSDUG00000001324	prpf38a	100	82.109	ENSPPRG00000013268	PRPF38A	71	89.140	Panthera_pardus
ENSSDUG00000001324	prpf38a	100	82.109	ENSPTIG00000015419	PRPF38A	71	89.140	Panthera_tigris_altaica
ENSSDUG00000001324	prpf38a	100	82.109	ENSPTRG00000000739	PRPF38A	74	89.140	Pan_troglodytes
ENSSDUG00000001324	prpf38a	100	82.109	ENSPANG00000015483	PRPF38A	71	89.140	Papio_anubis
ENSSDUG00000001324	prpf38a	100	94.175	ENSPKIG00000011439	prpf38a	72	94.118	Paramormyrops_kingsleyae
ENSSDUG00000001324	prpf38a	100	80.831	ENSPSIG00000017487	PRPF38A	71	87.330	Pelodiscus_sinensis
ENSSDUG00000001324	prpf38a	100	80.317	ENSPEMG00000011212	-	70	81.614	Peromyscus_maniculatus_bairdii
ENSSDUG00000001324	prpf38a	100	82.109	ENSPEMG00000023277	-	71	89.140	Peromyscus_maniculatus_bairdii
ENSSDUG00000001324	prpf38a	100	79.618	ENSPCIG00000022369	-	71	85.586	Phascolarctos_cinereus
ENSSDUG00000001324	prpf38a	100	96.440	ENSPFOG00000004248	prpf38a	100	96.440	Poecilia_formosa
ENSSDUG00000001324	prpf38a	100	96.440	ENSPLAG00000010328	prpf38a	100	96.440	Poecilia_latipinna
ENSSDUG00000001324	prpf38a	100	96.440	ENSPMEG00000011804	prpf38a	100	96.440	Poecilia_mexicana
ENSSDUG00000001324	prpf38a	94	81.208	ENSPREG00000002835	prpf38a	58	97.872	Poecilia_reticulata
ENSSDUG00000001324	prpf38a	100	74.214	ENSPPYG00000001348	PRPF38A	71	77.876	Pongo_abelii
ENSSDUG00000001324	prpf38a	100	81.789	ENSPCAG00000013328	PRPF38A	71	88.688	Procavia_capensis
ENSSDUG00000001324	prpf38a	100	67.638	ENSPCOG00000020709	-	73	71.946	Propithecus_coquereli
ENSSDUG00000001324	prpf38a	100	82.109	ENSPCOG00000016387	-	71	89.140	Propithecus_coquereli
ENSSDUG00000001324	prpf38a	100	82.109	ENSPVAG00000009803	PRPF38A	71	89.140	Pteropus_vampyrus
ENSSDUG00000001324	prpf38a	100	96.440	ENSPNYG00000005571	prpf38a	100	96.440	Pundamilia_nyererei
ENSSDUG00000001324	prpf38a	100	85.304	ENSPNAG00000010399	prpf38a	71	94.570	Pygocentrus_nattereri
ENSSDUG00000001324	prpf38a	100	82.428	ENSRNOG00000009451	Prpf38a	71	89.593	Rattus_norvegicus
ENSSDUG00000001324	prpf38a	100	82.109	ENSRBIG00000036442	PRPF38A	74	89.140	Rhinopithecus_bieti
ENSSDUG00000001324	prpf38a	100	82.109	ENSRROG00000032788	PRPF38A	71	89.140	Rhinopithecus_roxellana
ENSSDUG00000001324	prpf38a	98	70.820	ENSRROG00000040003	-	72	72.851	Rhinopithecus_roxellana
ENSSDUG00000001324	prpf38a	100	82.109	ENSSBOG00000019515	PRPF38A	71	89.140	Saimiri_boliviensis_boliviensis
ENSSDUG00000001324	prpf38a	96	66.555	ENSSHAG00000006029	-	74	76.923	Sarcophilus_harrisii
ENSSDUG00000001324	prpf38a	86	76.838	ENSSHAG00000006906	-	66	82.778	Sarcophilus_harrisii
ENSSDUG00000001324	prpf38a	100	92.903	ENSSFOG00015013572	prpf38a	72	89.640	Scleropages_formosus
ENSSDUG00000001324	prpf38a	99	97.720	ENSSMAG00000015379	prpf38a	99	97.720	Scophthalmus_maximus
ENSSDUG00000001324	prpf38a	100	100.000	ENSSLDG00000014803	prpf38a	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000001324	prpf38a	100	65.176	ENSSARG00000014458	PRPF38A	71	65.158	Sorex_araneus
ENSSDUG00000001324	prpf38a	100	81.150	ENSSPUG00000013259	PRPF38A	71	87.783	Sphenodon_punctatus
ENSSDUG00000001324	prpf38a	100	82.848	ENSSPAG00000010449	prpf38a	68	78.281	Stegastes_partitus
ENSSDUG00000001324	prpf38a	100	82.109	ENSSSCG00000028288	PRPF38A	71	89.140	Sus_scrofa
ENSSDUG00000001324	prpf38a	100	77.955	ENSTGUG00000008995	PRPF38A	71	83.258	Taeniopygia_guttata
ENSSDUG00000001324	prpf38a	72	96.833	ENSTRUG00000003374	prpf38a	68	96.833	Takifugu_rubripes
ENSSDUG00000001324	prpf38a	100	95.498	ENSTNIG00000005533	prpf38a	100	95.498	Tetraodon_nigroviridis
ENSSDUG00000001324	prpf38a	100	81.470	ENSTBEG00000000725	PRPF38A	71	89.140	Tupaia_belangeri
ENSSDUG00000001324	prpf38a	100	82.109	ENSTTRG00000016139	PRPF38A	71	89.140	Tursiops_truncatus
ENSSDUG00000001324	prpf38a	100	82.109	ENSUAMG00000000625	PRPF38A	71	89.140	Ursus_americanus
ENSSDUG00000001324	prpf38a	100	82.109	ENSUMAG00000022674	PRPF38A	71	89.140	Ursus_maritimus
ENSSDUG00000001324	prpf38a	75	87.879	ENSVPAG00000000907	PRPF38A	71	88.688	Vicugna_pacos
ENSSDUG00000001324	prpf38a	100	82.109	ENSVVUG00000004475	PRPF38A	71	89.140	Vulpes_vulpes
ENSSDUG00000001324	prpf38a	100	80.573	ENSXETG00000008060	prpf38a	71	86.425	Xenopus_tropicalis
ENSSDUG00000001324	prpf38a	72	94.248	ENSXCOG00000007393	prpf38a	75	94.248	Xiphophorus_couchianus
ENSSDUG00000001324	prpf38a	100	96.440	ENSXMAG00000026143	prpf38a	100	96.440	Xiphophorus_maculatus