EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000001365 (Gene tree)
Gene ID: 111217379
Gene Symbol: mbd4
Alias: -
Full Name: methyl-CpG binding domain 4%2C DNA glycosylase
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 3264 bases
Position: chrBDQW01000043.1:1892759-1896022
Accession: 111217379
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000001719	MBD	PF01429.19	5.3e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000001779	-	1690	XM_022739218	ENSSDUP00000001719	464 (aa)	XP_022594939	UPI000BBE1857

Gene Model

Click here to download ENSSDUG00000001365's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000001365's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000001365	mbd4	51	80.000	ENSG00000129071	MBD4	85	65.625	Homo_sapiens
ENSSDUG00000001365	mbd4	98	70.478	ENSAPOG00000021668	mbd4	100	70.478	Acanthochromis_polyacanthus
ENSSDUG00000001365	mbd4	98	72.234	ENSAOCG00000001157	mbd4	100	72.234	Amphiprion_ocellaris
ENSSDUG00000001365	mbd4	98	72.234	ENSAPEG00000016131	mbd4	100	72.234	Amphiprion_percula
ENSSDUG00000001365	mbd4	100	72.577	ENSATEG00000014594	MBD4	92	72.577	Anabas_testudineus
ENSSDUG00000001365	mbd4	66	64.609	ENSAMXG00000017271	mbd4	75	64.609	Astyanax_mexicanus
ENSSDUG00000001365	mbd4	94	44.628	ENSCHIG00000009760	MBD4	86	44.628	Capra_hircus
ENSSDUG00000001365	mbd4	94	44.311	ENSCLAG00000008974	MBD4	88	44.311	Chinchilla_lanigera
ENSSDUG00000001365	mbd4	94	36.966	ENSEBUG00000010816	mbd4	99	36.966	Eptatretus_burgeri
ENSSDUG00000001365	mbd4	94	43.347	ENSECAG00000022106	MBD4	87	43.347	Equus_caballus
ENSSDUG00000001365	mbd4	95	50.800	ENSELUG00000018483	MBD4	84	51.200	Esox_lucius
ENSSDUG00000001365	mbd4	93	52.401	ENSGMOG00000013830	mbd4	100	52.401	Gadus_morhua
ENSSDUG00000001365	mbd4	93	63.616	ENSGAFG00000016011	mbd4	98	64.062	Gambusia_affinis
ENSSDUG00000001365	mbd4	94	46.727	ENSGACG00000001970	-	90	47.404	Gasterosteus_aculeatus
ENSSDUG00000001365	mbd4	62	63.071	ENSHGLG00000009034	MBD4	54	63.071	Heterocephalus_glaber_female
ENSSDUG00000001365	mbd4	62	63.900	ENSHGLG00100000135	MBD4	54	63.900	Heterocephalus_glaber_male
ENSSDUG00000001365	mbd4	93	61.957	ENSKMAG00000015015	mbd4	97	63.696	Kryptolebias_marmoratus
ENSSDUG00000001365	mbd4	99	63.730	ENSLBEG00000005669	MBD4	92	63.730	Labrus_bergylta
ENSSDUG00000001365	mbd4	70	65.778	ENSLOCG00000013054	MBD4	64	65.778	Lepisosteus_oculatus
ENSSDUG00000001365	mbd4	63	63.492	ENSMAMG00000024084	-	85	63.492	Mastacembelus_armatus
ENSSDUG00000001365	mbd4	100	72.358	ENSMALG00000021517	mbd4	93	72.358	Monopterus_albus
ENSSDUG00000001365	mbd4	62	64.344	MGP_CAROLIEiJ_G0028760	Mbd4	54	64.344	Mus_caroli
ENSSDUG00000001365	mbd4	93	44.625	ENSMUSG00000030322	Mbd4	87	44.625	Mus_musculus
ENSSDUG00000001365	mbd4	93	45.492	MGP_PahariEiJ_G0022511	-	86	45.492	Mus_pahari
ENSSDUG00000001365	mbd4	93	44.990	MGP_SPRETEiJ_G0029788	Mbd4	87	44.990	Mus_spretus
ENSSDUG00000001365	mbd4	80	78.235	ENSOPRG00000000473	MBD4	64	78.235	Ochotona_princeps
ENSSDUG00000001365	mbd4	93	68.737	ENSONIG00000017212	mbd4	100	68.737	Oreochromis_niloticus
ENSSDUG00000001365	mbd4	61	59.322	ENSOCUG00000013006	MBD4	50	59.322	Oryctolagus_cuniculus
ENSSDUG00000001365	mbd4	96	58.913	ENSORLG00000011049	mbd4	99	58.913	Oryzias_latipes
ENSSDUG00000001365	mbd4	96	59.565	ENSORLG00020020013	mbd4	99	59.565	Oryzias_latipes_hni
ENSSDUG00000001365	mbd4	96	59.130	ENSORLG00015015342	mbd4	99	59.130	Oryzias_latipes_hsok
ENSSDUG00000001365	mbd4	97	62.418	ENSOMEG00000008819	mbd4	94	62.418	Oryzias_melastigma
ENSSDUG00000001365	mbd4	94	44.835	ENSOARG00000014699	MBD4	86	44.835	Ovis_aries
ENSSDUG00000001365	mbd4	94	48.069	ENSPKIG00000012306	MBD4	76	48.069	Paramormyrops_kingsleyae
ENSSDUG00000001365	mbd4	86	38.717	ENSPEMG00000006226	Mbd4	86	39.159	Peromyscus_maniculatus_bairdii
ENSSDUG00000001365	mbd4	93	63.239	ENSPFOG00000014471	mbd4	98	63.239	Poecilia_formosa
ENSSDUG00000001365	mbd4	63	64.730	ENSRNOG00000010919	Mbd4	54	64.730	Rattus_norvegicus
ENSSDUG00000001365	mbd4	94	47.059	ENSSFOG00015016292	mbd4	96	47.059	Scleropages_formosus
ENSSDUG00000001365	mbd4	100	72.371	ENSSMAG00000013958	-	72	72.577	Scophthalmus_maximus
ENSSDUG00000001365	mbd4	88	96.560	ENSSLDG00000010295	MBD4	87	96.560	Seriola_lalandi_dorsalis
ENSSDUG00000001365	mbd4	85	80.000	ENSSPUG00000017344	MBD4	70	80.000	Sphenodon_punctatus
ENSSDUG00000001365	mbd4	98	60.294	ENSTRUG00000010124	mbd4	100	60.294	Takifugu_rubripes
ENSSDUG00000001365	mbd4	93	57.265	ENSTNIG00000017927	mbd4	100	57.265	Tetraodon_nigroviridis
ENSSDUG00000001365	mbd4	93	44.592	ENSXETG00000026622	mbd4	89	44.592	Xenopus_tropicalis
ENSSDUG00000001365	mbd4	93	64.381	ENSXMAG00000021129	mbd4	98	64.381	Xiphophorus_maculatus