EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000001528 (Gene tree)
Gene ID: 111216929
Gene Symbol: sbds
Alias: zgc:56700
Full Name: SBDS%2C ribosome maturation factor
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 2799 bases
Position: chrBDQW01000036.1:414605-417403
Accession: 111216929
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000001945	SBDS	PF01172.18	4e-34	1	1
ENSSDUP00000001945	SBDS_C	PF09377.10	2.4e-39	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000002008	-	1297	XM_022738590	ENSSDUP00000001945	249 (aa)	XP_022594311	UPI000BBE59BE

Gene Model

Click here to download ENSSDUG00000001528's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000001528's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000001528	sbds	100	82.731	ENSG00000126524	SBDS	97	89.157	Homo_sapiens
ENSSDUG00000001528	sbds	100	96.386	ENSAPOG00000014285	sbds	100	96.386	Acanthochromis_polyacanthus
ENSSDUG00000001528	sbds	100	82.731	ENSAMEG00000018167	SBDS	99	82.731	Ailuropoda_melanoleuca
ENSSDUG00000001528	sbds	100	95.238	ENSACIG00000007308	sbds	100	95.238	Amphilophus_citrinellus
ENSSDUG00000001528	sbds	100	96.386	ENSAOCG00000016770	sbds	100	96.386	Amphiprion_ocellaris
ENSSDUG00000001528	sbds	100	96.787	ENSAPEG00000015897	sbds	100	96.787	Amphiprion_percula
ENSSDUG00000001528	sbds	100	95.984	ENSATEG00000006901	sbds	100	95.984	Anabas_testudineus
ENSSDUG00000001528	sbds	93	76.623	ENSANAG00000024342	-	95	79.518	Aotus_nancymaae
ENSSDUG00000001528	sbds	83	81.553	ENSANAG00000037501	-	99	81.553	Aotus_nancymaae
ENSSDUG00000001528	sbds	100	96.386	ENSACLG00000018750	sbds	100	96.386	Astatotilapia_calliptera
ENSSDUG00000001528	sbds	100	89.960	ENSAMXG00000005361	sbds	99	89.960	Astyanax_mexicanus
ENSSDUG00000001528	sbds	100	82.731	ENSBTAG00000004051	SBDS	99	82.731	Bos_taurus
ENSSDUG00000001528	sbds	98	57.724	WBGene00021063	sbds-1	97	57.724	Caenorhabditis_elegans
ENSSDUG00000001528	sbds	100	82.731	ENSCJAG00000041007	SBDS	99	82.731	Callithrix_jacchus
ENSSDUG00000001528	sbds	100	80.876	ENSCAFG00000010797	SBDS	99	80.876	Canis_familiaris
ENSSDUG00000001528	sbds	100	82.731	ENSCAFG00020005357	SBDS	99	82.731	Canis_lupus_dingo
ENSSDUG00000001528	sbds	100	82.731	ENSCHIG00000026854	SBDS	99	82.731	Capra_hircus
ENSSDUG00000001528	sbds	100	82.731	ENSTSYG00000033822	SBDS	99	82.731	Carlito_syrichta
ENSSDUG00000001528	sbds	65	80.368	ENSCAPG00000006634	SBDS	99	80.368	Cavia_aperea
ENSSDUG00000001528	sbds	100	83.534	ENSCPOG00000036143	SBDS	99	83.534	Cavia_porcellus
ENSSDUG00000001528	sbds	100	82.731	ENSCCAG00000020671	SBDS	93	89.157	Cebus_capucinus
ENSSDUG00000001528	sbds	100	82.731	ENSCATG00000039026	SBDS	99	82.731	Cercocebus_atys
ENSSDUG00000001528	sbds	99	58.468	ENSCLAG00000002113	-	99	58.468	Chinchilla_lanigera
ENSSDUG00000001528	sbds	100	83.936	ENSCLAG00000005721	-	99	83.936	Chinchilla_lanigera
ENSSDUG00000001528	sbds	100	82.731	ENSCSAG00000018275	SBDS	99	82.731	Chlorocebus_sabaeus
ENSSDUG00000001528	sbds	100	77.912	ENSCHOG00000003795	SBDS	99	77.912	Choloepus_hoffmanni
ENSSDUG00000001528	sbds	100	85.141	ENSCPBG00000014893	SBDS	99	85.141	Chrysemys_picta_bellii
ENSSDUG00000001528	sbds	99	66.532	ENSCSAVG00000011811	-	99	66.532	Ciona_savignyi
ENSSDUG00000001528	sbds	100	82.329	ENSCANG00000032368	SBDS	99	82.329	Colobus_angolensis_palliatus
ENSSDUG00000001528	sbds	65	80.368	ENSCGRG00001019886	Sbds	99	80.368	Cricetulus_griseus_chok1gshd
ENSSDUG00000001528	sbds	83	82.524	ENSCGRG00000009211	Sbds	99	82.524	Cricetulus_griseus_crigri
ENSSDUG00000001528	sbds	100	94.378	ENSCSEG00000005798	sbds	100	94.378	Cynoglossus_semilaevis
ENSSDUG00000001528	sbds	100	92.771	ENSCVAG00000001053	sbds	100	92.771	Cyprinodon_variegatus
ENSSDUG00000001528	sbds	100	89.157	ENSDARG00000027803	sbds	99	89.157	Danio_rerio
ENSSDUG00000001528	sbds	100	82.731	ENSDNOG00000041174	SBDS	99	82.731	Dasypus_novemcinctus
ENSSDUG00000001528	sbds	100	84.739	ENSDORG00000026218	Sbds	99	84.739	Dipodomys_ordii
ENSSDUG00000001528	sbds	91	62.281	FBgn0035714	CG8549	98	61.538	Drosophila_melanogaster
ENSSDUG00000001528	sbds	93	58.621	ENSEBUG00000015780	sbds	99	58.621	Eptatretus_burgeri
ENSSDUG00000001528	sbds	100	82.731	ENSEASG00005008821	SBDS	99	82.731	Equus_asinus_asinus
ENSSDUG00000001528	sbds	100	82.731	ENSECAG00000008202	SBDS	99	82.731	Equus_caballus
ENSSDUG00000001528	sbds	84	62.981	ENSEEUG00000004768	SBDS	100	62.981	Erinaceus_europaeus
ENSSDUG00000001528	sbds	100	90.361	ENSELUG00000008382	sbds	99	90.361	Esox_lucius
ENSSDUG00000001528	sbds	100	82.731	ENSFCAG00000022142	SBDS	99	82.731	Felis_catus
ENSSDUG00000001528	sbds	100	86.345	ENSFALG00000013808	SBDS	99	86.345	Ficedula_albicollis
ENSSDUG00000001528	sbds	100	83.534	ENSFDAG00000018947	-	99	83.534	Fukomys_damarensis
ENSSDUG00000001528	sbds	100	89.960	ENSFHEG00000000708	sbds	100	89.960	Fundulus_heteroclitus
ENSSDUG00000001528	sbds	100	89.960	ENSGMOG00000018356	sbds	99	89.960	Gadus_morhua
ENSSDUG00000001528	sbds	100	83.936	ENSGALG00000027989	SBDS	99	83.936	Gallus_gallus
ENSSDUG00000001528	sbds	92	90.000	ENSGAFG00000014204	sbds	100	90.000	Gambusia_affinis
ENSSDUG00000001528	sbds	100	91.165	ENSGACG00000012697	sbds	100	91.165	Gasterosteus_aculeatus
ENSSDUG00000001528	sbds	86	85.446	ENSGAGG00000022402	SBDS	99	85.446	Gopherus_agassizii
ENSSDUG00000001528	sbds	96	64.167	ENSGGOG00000040023	-	92	64.167	Gorilla_gorilla
ENSSDUG00000001528	sbds	100	96.386	ENSHBUG00000002660	sbds	100	96.386	Haplochromis_burtoni
ENSSDUG00000001528	sbds	100	81.928	ENSHGLG00000009671	SBDS	99	81.928	Heterocephalus_glaber_female
ENSSDUG00000001528	sbds	100	81.928	ENSHGLG00100011332	SBDS	99	81.928	Heterocephalus_glaber_male
ENSSDUG00000001528	sbds	100	90.361	ENSHCOG00000018606	sbds	100	90.361	Hippocampus_comes
ENSSDUG00000001528	sbds	100	88.755	ENSIPUG00000006536	sbds	99	88.755	Ictalurus_punctatus
ENSSDUG00000001528	sbds	99	80.972	ENSJJAG00000012033	-	99	80.972	Jaculus_jaculus
ENSSDUG00000001528	sbds	100	59.921	ENSJJAG00000003934	-	99	60.400	Jaculus_jaculus
ENSSDUG00000001528	sbds	100	94.378	ENSKMAG00000018542	sbds	100	94.378	Kryptolebias_marmoratus
ENSSDUG00000001528	sbds	100	91.566	ENSLBEG00000016687	sbds	100	91.566	Labrus_bergylta
ENSSDUG00000001528	sbds	100	73.518	ENSLACG00000018916	SBDS	99	73.518	Latimeria_chalumnae
ENSSDUG00000001528	sbds	100	89.558	ENSLOCG00000004073	sbds	99	89.558	Lepisosteus_oculatus
ENSSDUG00000001528	sbds	100	83.133	ENSLAFG00000008763	SBDS	99	83.133	Loxodonta_africana
ENSSDUG00000001528	sbds	100	82.731	ENSMFAG00000032620	SBDS	99	82.731	Macaca_fascicularis
ENSSDUG00000001528	sbds	100	82.731	ENSMMUG00000045653	SBDS	99	82.731	Macaca_mulatta
ENSSDUG00000001528	sbds	100	82.731	ENSMNEG00000031523	SBDS	99	82.731	Macaca_nemestrina
ENSSDUG00000001528	sbds	100	66.798	ENSMLEG00000036826	SBDS	99	66.798	Mandrillus_leucophaeus
ENSSDUG00000001528	sbds	100	96.386	ENSMAMG00000016062	sbds	100	96.386	Mastacembelus_armatus
ENSSDUG00000001528	sbds	100	96.386	ENSMZEG00005024385	sbds	100	96.386	Maylandia_zebra
ENSSDUG00000001528	sbds	100	83.936	ENSMGAG00000002119	SBDS	99	83.936	Meleagris_gallopavo
ENSSDUG00000001528	sbds	100	67.871	ENSMAUG00000022214	-	100	67.871	Mesocricetus_auratus
ENSSDUG00000001528	sbds	100	82.731	ENSMICG00000014366	SBDS	99	82.731	Microcebus_murinus
ENSSDUG00000001528	sbds	100	83.133	ENSMOCG00000011739	Sbds	99	83.133	Microtus_ochrogaster
ENSSDUG00000001528	sbds	100	85.200	ENSMMOG00000005061	sbds	100	85.200	Mola_mola
ENSSDUG00000001528	sbds	100	83.936	ENSMODG00000006644	SBDS	99	83.936	Monodelphis_domestica
ENSSDUG00000001528	sbds	100	91.566	ENSMALG00000010219	sbds	100	91.566	Monopterus_albus
ENSSDUG00000001528	sbds	100	83.936	MGP_CAROLIEiJ_G0027800	Sbds	98	92.857	Mus_caroli
ENSSDUG00000001528	sbds	100	84.337	ENSMUSG00000025337	Sbds	98	92.857	Mus_musculus
ENSSDUG00000001528	sbds	100	83.936	MGP_PahariEiJ_G0024384	Sbds	98	92.857	Mus_pahari
ENSSDUG00000001528	sbds	100	84.337	MGP_SPRETEiJ_G0028798	Sbds	98	92.857	Mus_spretus
ENSSDUG00000001528	sbds	67	83.234	ENSMPUG00000016192	SBDS	96	83.234	Mustela_putorius_furo
ENSSDUG00000001528	sbds	73	77.901	ENSMLUG00000013575	SBDS	99	77.901	Myotis_lucifugus
ENSSDUG00000001528	sbds	100	83.936	ENSNGAG00000012093	Sbds	99	83.936	Nannospalax_galili
ENSSDUG00000001528	sbds	100	96.386	ENSNBRG00000017027	sbds	100	96.386	Neolamprologus_brichardi
ENSSDUG00000001528	sbds	100	82.731	ENSNLEG00000013288	SBDS	99	82.731	Nomascus_leucogenys
ENSSDUG00000001528	sbds	100	83.936	ENSOPRG00000008721	SBDS	99	83.936	Ochotona_princeps
ENSSDUG00000001528	sbds	100	75.904	ENSODEG00000019253	-	84	75.904	Octodon_degus
ENSSDUG00000001528	sbds	100	65.863	ENSODEG00000001116	-	99	65.863	Octodon_degus
ENSSDUG00000001528	sbds	100	63.855	ENSODEG00000000137	-	84	66.667	Octodon_degus
ENSSDUG00000001528	sbds	100	96.386	ENSONIG00000005874	sbds	100	96.386	Oreochromis_niloticus
ENSSDUG00000001528	sbds	82	82.353	ENSOANG00000007674	-	99	82.353	Ornithorhynchus_anatinus
ENSSDUG00000001528	sbds	100	84.739	ENSOCUG00000003170	SBDS	99	84.739	Oryctolagus_cuniculus
ENSSDUG00000001528	sbds	100	91.566	ENSORLG00000023489	sbds	100	91.566	Oryzias_latipes
ENSSDUG00000001528	sbds	100	91.165	ENSORLG00020019282	sbds	100	91.165	Oryzias_latipes_hni
ENSSDUG00000001528	sbds	100	91.165	ENSORLG00015008005	sbds	100	91.165	Oryzias_latipes_hsok
ENSSDUG00000001528	sbds	100	91.968	ENSOMEG00000022747	sbds	100	91.968	Oryzias_melastigma
ENSSDUG00000001528	sbds	100	71.486	ENSOGAG00000015036	-	99	71.486	Otolemur_garnettii
ENSSDUG00000001528	sbds	100	83.133	ENSOGAG00000009011	-	99	83.133	Otolemur_garnettii
ENSSDUG00000001528	sbds	100	82.731	ENSOARG00000010609	SBDS	99	82.731	Ovis_aries
ENSSDUG00000001528	sbds	100	81.928	ENSPPAG00000043889	-	99	81.928	Pan_paniscus
ENSSDUG00000001528	sbds	100	82.731	ENSPPRG00000002307	SBDS	99	82.731	Panthera_pardus
ENSSDUG00000001528	sbds	100	82.731	ENSPTIG00000021308	SBDS	99	82.731	Panthera_tigris_altaica
ENSSDUG00000001528	sbds	100	82.731	ENSPTRG00000019254	SBDS	99	82.731	Pan_troglodytes
ENSSDUG00000001528	sbds	100	69.076	ENSPTRG00000050835	-	99	69.076	Pan_troglodytes
ENSSDUG00000001528	sbds	87	80.645	ENSPTRG00000048174	-	96	80.645	Pan_troglodytes
ENSSDUG00000001528	sbds	100	69.076	ENSPTRG00000047744	-	99	69.076	Pan_troglodytes
ENSSDUG00000001528	sbds	100	82.731	ENSPANG00000004078	SBDS	99	82.731	Papio_anubis
ENSSDUG00000001528	sbds	100	91.566	ENSPKIG00000006489	sbds	99	91.566	Paramormyrops_kingsleyae
ENSSDUG00000001528	sbds	83	83.092	ENSPSIG00000014603	SBDS	99	83.092	Pelodiscus_sinensis
ENSSDUG00000001528	sbds	100	95.984	ENSPMGG00000004246	sbds	100	95.984	Periophthalmus_magnuspinnatus
ENSSDUG00000001528	sbds	100	83.936	ENSPEMG00000008728	Sbds	99	83.936	Peromyscus_maniculatus_bairdii
ENSSDUG00000001528	sbds	100	84.337	ENSPCIG00000029718	SBDS	99	84.337	Phascolarctos_cinereus
ENSSDUG00000001528	sbds	100	92.369	ENSPFOG00000015837	sbds	100	92.369	Poecilia_formosa
ENSSDUG00000001528	sbds	100	92.771	ENSPLAG00000003641	sbds	100	92.771	Poecilia_latipinna
ENSSDUG00000001528	sbds	100	92.369	ENSPMEG00000019483	sbds	100	92.369	Poecilia_mexicana
ENSSDUG00000001528	sbds	100	92.369	ENSPREG00000018758	sbds	100	92.369	Poecilia_reticulata
ENSSDUG00000001528	sbds	100	82.731	ENSPPYG00000017513	SBDS	99	82.731	Pongo_abelii
ENSSDUG00000001528	sbds	100	82.329	ENSPCOG00000021098	SBDS	99	82.329	Propithecus_coquereli
ENSSDUG00000001528	sbds	100	83.133	ENSPVAG00000009369	SBDS	99	83.133	Pteropus_vampyrus
ENSSDUG00000001528	sbds	100	95.984	ENSPNYG00000022403	sbds	100	95.984	Pundamilia_nyererei
ENSSDUG00000001528	sbds	100	91.566	ENSPNAG00000001120	sbds	99	91.566	Pygocentrus_nattereri
ENSSDUG00000001528	sbds	100	83.936	ENSRNOG00000000888	Sbds	99	83.936	Rattus_norvegicus
ENSSDUG00000001528	sbds	100	82.731	ENSRBIG00000035557	SBDS	99	82.731	Rhinopithecus_bieti
ENSSDUG00000001528	sbds	100	67.871	ENSRROG00000041986	-	99	67.871	Rhinopithecus_roxellana
ENSSDUG00000001528	sbds	100	82.731	ENSRROG00000040842	-	99	82.731	Rhinopithecus_roxellana
ENSSDUG00000001528	sbds	96	42.276	YLR022C	-	96	42.276	Saccharomyces_cerevisiae
ENSSDUG00000001528	sbds	93	80.952	ENSSBOG00000022460	SBDS	99	80.952	Saimiri_boliviensis_boliviensis
ENSSDUG00000001528	sbds	100	71.888	ENSSHAG00000010263	SBDS	99	71.888	Sarcophilus_harrisii
ENSSDUG00000001528	sbds	100	91.566	ENSSFOG00015001108	sbds	99	91.566	Scleropages_formosus
ENSSDUG00000001528	sbds	100	94.779	ENSSMAG00000020506	sbds	100	94.779	Scophthalmus_maximus
ENSSDUG00000001528	sbds	100	99.598	ENSSLDG00000003659	sbds	100	99.598	Seriola_lalandi_dorsalis
ENSSDUG00000001528	sbds	61	88.235	ENSSARG00000013132	-	100	88.235	Sorex_araneus
ENSSDUG00000001528	sbds	73	90.698	ENSSARG00000001899	-	73	90.698	Sorex_araneus
ENSSDUG00000001528	sbds	100	83.133	ENSSPUG00000002699	SBDS	99	83.133	Sphenodon_punctatus
ENSSDUG00000001528	sbds	100	97.590	ENSSPAG00000016419	sbds	100	89.600	Stegastes_partitus
ENSSDUG00000001528	sbds	100	82.731	ENSSSCG00000007732	SBDS	99	82.731	Sus_scrofa
ENSSDUG00000001528	sbds	66	85.976	ENSTGUG00000003426	SBDS	99	85.976	Taeniopygia_guttata
ENSSDUG00000001528	sbds	100	95.181	ENSTRUG00000021443	sbds	100	95.181	Takifugu_rubripes
ENSSDUG00000001528	sbds	100	95.181	ENSTNIG00000019000	sbds	100	95.181	Tetraodon_nigroviridis
ENSSDUG00000001528	sbds	84	70.673	ENSTBEG00000001178	SBDS	100	70.673	Tupaia_belangeri
ENSSDUG00000001528	sbds	100	65.060	ENSTTRG00000003921	SBDS	99	65.060	Tursiops_truncatus
ENSSDUG00000001528	sbds	100	82.731	ENSUAMG00000001326	SBDS	99	82.731	Ursus_americanus
ENSSDUG00000001528	sbds	100	82.731	ENSUMAG00000015353	SBDS	99	82.731	Ursus_maritimus
ENSSDUG00000001528	sbds	100	82.731	ENSVVUG00000016478	SBDS	99	82.731	Vulpes_vulpes
ENSSDUG00000001528	sbds	100	85.141	ENSXETG00000010093	sbds	99	85.141	Xenopus_tropicalis
ENSSDUG00000001528	sbds	100	82.329	ENSXCOG00000010639	sbds	100	82.329	Xiphophorus_couchianus
ENSSDUG00000001528	sbds	100	92.771	ENSXMAG00000006065	sbds	100	92.771	Xiphophorus_maculatus