EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000001723 (Gene tree)
Gene ID: 111239951
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein C-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 10658 bases
Position: chrBDQW01006988.1:247098-257755
Accession: 111239951
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000002305	RRM_1	PF00076.22	2.1e-13	1	1
ENSSDUP00000002271	RRM_1	PF00076.22	2.3e-13	1	1
ENSSDUP00000002244	RRM_1	PF00076.22	2.5e-13	1	1
ENSSDUP00000002255	RRM_1	PF00076.22	2.9e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000002309	-	2624	-	ENSSDUP00000002244	317 (aa)	-	-
ENSSDUT00000002370	-	867	-	ENSSDUP00000002305	288 (aa)	-	-
ENSSDUT00000002320	-	2571	XM_022769900	ENSSDUP00000002255	346 (aa)	XP_022625621	UPI000BBF1951
ENSSDUT00000002337	-	2485	XM_022769907	ENSSDUP00000002271	306 (aa)	XP_022625628	UPI000BBF102A

Gene Model

Click here to download ENSSDUG00000001723's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000001723's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000001723	-	98	78.778	ENSSDUG00000006730	-	87	83.696
ENSSDUG00000001723	-	68	51.402	ENSSDUG00000002411	raly	89	46.125
ENSSDUG00000001723	-	67	57.991	ENSSDUG00000007587	-	75	56.444
ENSSDUG00000001723	-	87	45.659	ENSSDUG00000012473	-	95	49.301

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000001723	-	87	44.737	ENSG00000184672	RALYL	93	77.215	Homo_sapiens
ENSSDUG00000001723	-	100	94.118	ENSAPOG00000006963	hnrnpc	100	94.118	Acanthochromis_polyacanthus
ENSSDUG00000001723	-	96	93.960	ENSACIG00000000270	-	99	93.537	Amphilophus_citrinellus
ENSSDUG00000001723	-	96	76.547	ENSACIG00000016568	-	96	76.923	Amphilophus_citrinellus
ENSSDUG00000001723	-	100	93.791	ENSAOCG00000003896	-	100	93.791	Amphiprion_ocellaris
ENSSDUG00000001723	-	90	81.295	ENSAOCG00000021616	-	87	80.851	Amphiprion_ocellaris
ENSSDUG00000001723	-	91	81.206	ENSAPEG00000019962	-	87	81.387	Amphiprion_percula
ENSSDUG00000001723	-	100	93.791	ENSAPEG00000001489	-	100	93.791	Amphiprion_percula
ENSSDUG00000001723	-	85	83.083	ENSATEG00000018006	-	95	76.154	Anabas_testudineus
ENSSDUG00000001723	-	100	93.831	ENSATEG00000011734	-	100	93.506	Anabas_testudineus
ENSSDUG00000001723	-	68	53.540	ENSAPLG00000015574	RALYL	78	54.148	Anas_platyrhynchos
ENSSDUG00000001723	-	72	50.424	ENSACAG00000028464	RALYL	77	53.712	Anolis_carolinensis
ENSSDUG00000001723	-	85	50.376	ENSANAG00000023383	RALYL	92	50.943	Aotus_nancymaae
ENSSDUG00000001723	-	100	88.274	ENSACLG00000000995	-	100	89.577	Astatotilapia_calliptera
ENSSDUG00000001723	-	100	88.274	ENSACLG00000013636	-	95	91.166	Astatotilapia_calliptera
ENSSDUG00000001723	-	86	80.370	ENSACLG00000005707	-	91	81.852	Astatotilapia_calliptera
ENSSDUG00000001723	-	68	77.990	ENSAMXG00000042946	hnrnpc	97	80.628	Astyanax_mexicanus
ENSSDUG00000001723	-	85	80.309	ENSAMXG00000034915	zgc:55733	91	80.534	Astyanax_mexicanus
ENSSDUG00000001723	-	85	50.000	ENSCJAG00000000402	RALYL	92	50.566	Callithrix_jacchus
ENSSDUG00000001723	-	87	42.173	ENSCPOG00000012314	RALYL	92	43.408	Cavia_porcellus
ENSSDUG00000001723	-	85	50.752	ENSCCAG00000025003	RALYL	77	77.215	Cebus_capucinus
ENSSDUG00000001723	-	87	44.737	ENSCATG00000042145	RALYL	92	49.265	Cercocebus_atys
ENSSDUG00000001723	-	72	51.899	ENSCLAG00000005228	RALYL	77	54.825	Chinchilla_lanigera
ENSSDUG00000001723	-	68	52.655	ENSCHOG00000013228	RALYL	75	52.232	Choloepus_hoffmanni
ENSSDUG00000001723	-	87	44.737	ENSCANG00000039144	RALYL	92	49.265	Colobus_angolensis_palliatus
ENSSDUG00000001723	-	70	52.838	ENSCGRG00001009241	Ralyl	77	55.022	Cricetulus_griseus_chok1gshd
ENSSDUG00000001723	-	70	82.488	ENSCSEG00000019769	-	72	82.160	Cynoglossus_semilaevis
ENSSDUG00000001723	-	84	77.011	ENSCSEG00000021349	-	84	77.122	Cynoglossus_semilaevis
ENSSDUG00000001723	-	89	73.358	ENSCVAG00000002797	-	91	70.370	Cyprinodon_variegatus
ENSSDUG00000001723	-	81	85.827	ENSCVAG00000016981	-	87	78.322	Cyprinodon_variegatus
ENSSDUG00000001723	-	91	81.655	ENSDARG00000103845	zgc:55733	94	83.012	Danio_rerio
ENSSDUG00000001723	-	78	80.165	ENSDARG00000053810	hnrnpc	86	77.455	Danio_rerio
ENSSDUG00000001723	-	72	52.101	ENSDORG00000003721	Ralyl	92	44.728	Dipodomys_ordii
ENSSDUG00000001723	-	52	57.407	ENSETEG00000014028	RALYL	85	58.580	Echinops_telfairi
ENSSDUG00000001723	-	92	42.525	ENSEBUG00000006049	RALYL	93	44.487	Eptatretus_burgeri
ENSSDUG00000001723	-	70	47.345	ENSEBUG00000012363	hnrnpc	66	46.460	Eptatretus_burgeri
ENSSDUG00000001723	-	72	52.521	ENSEEUG00000007202	RALYL	80	54.077	Erinaceus_europaeus
ENSSDUG00000001723	-	85	83.209	ENSELUG00000004132	-	91	83.643	Esox_lucius
ENSSDUG00000001723	-	83	82.593	ENSELUG00000007714	-	96	80.919	Esox_lucius
ENSSDUG00000001723	-	68	57.209	ENSFALG00000008647	RALYL	97	57.944	Ficedula_albicollis
ENSSDUG00000001723	-	83	80.074	ENSFHEG00000007278	-	90	74.582	Fundulus_heteroclitus
ENSSDUG00000001723	-	92	86.620	ENSFHEG00000003605	-	93	85.915	Fundulus_heteroclitus
ENSSDUG00000001723	-	72	54.626	ENSGALG00000036938	RALYL	76	54.148	Gallus_gallus
ENSSDUG00000001723	-	95	75.593	ENSGAFG00000020992	-	90	78.445	Gambusia_affinis
ENSSDUG00000001723	-	100	83.117	ENSGAFG00000020486	-	93	85.915	Gambusia_affinis
ENSSDUG00000001723	-	72	75.439	ENSGACG00000018932	-	87	76.852	Gasterosteus_aculeatus
ENSSDUG00000001723	-	83	83.462	ENSGACG00000017772	-	98	82.558	Gasterosteus_aculeatus
ENSSDUG00000001723	-	87	44.737	ENSGGOG00000000841	RALYL	92	49.265	Gorilla_gorilla
ENSSDUG00000001723	-	99	75.312	ENSHBUG00000010527	-	87	80.714	Haplochromis_burtoni
ENSSDUG00000001723	-	100	88.599	ENSHBUG00000018342	-	100	89.902	Haplochromis_burtoni
ENSSDUG00000001723	-	72	51.477	ENSHGLG00000004866	RALYL	77	54.386	Heterocephalus_glaber_female
ENSSDUG00000001723	-	72	51.477	ENSHGLG00100017480	RALYL	77	54.386	Heterocephalus_glaber_male
ENSSDUG00000001723	-	83	80.074	ENSHCOG00000012333	hnrnpc	95	76.451	Hippocampus_comes
ENSSDUG00000001723	-	86	80.608	ENSIPUG00000008666	zgc:55733	93	84.834	Ictalurus_punctatus
ENSSDUG00000001723	-	84	80.233	ENSIPUG00000011271	hnrnpc	97	82.432	Ictalurus_punctatus
ENSSDUG00000001723	-	72	51.681	ENSSTOG00000012583	RALYL	78	54.585	Ictidomys_tridecemlineatus
ENSSDUG00000001723	-	92	90.000	ENSKMAG00000011170	-	91	89.362	Kryptolebias_marmoratus
ENSSDUG00000001723	-	81	80.709	ENSKMAG00000018265	-	87	79.004	Kryptolebias_marmoratus
ENSSDUG00000001723	-	86	83.032	ENSLBEG00000006193	-	86	80.505	Labrus_bergylta
ENSSDUG00000001723	-	95	86.348	ENSLBEG00000006979	-	99	84.932	Labrus_bergylta
ENSSDUG00000001723	-	96	81.967	ENSLBEG00000024418	-	99	81.063	Labrus_bergylta
ENSSDUG00000001723	-	85	71.481	ENSLOCG00000002560	hnrnpc	93	73.529	Lepisosteus_oculatus
ENSSDUG00000001723	-	87	44.737	ENSMNEG00000033288	RALYL	92	49.265	Macaca_nemestrina
ENSSDUG00000001723	-	87	44.737	ENSMLEG00000038284	RALYL	92	49.265	Mandrillus_leucophaeus
ENSSDUG00000001723	-	85	81.579	ENSMAMG00000008033	-	94	80.952	Mastacembelus_armatus
ENSSDUG00000001723	-	92	92.580	ENSMAMG00000012236	-	92	93.640	Mastacembelus_armatus
ENSSDUG00000001723	-	100	88.274	ENSMZEG00005020460	-	100	89.577	Maylandia_zebra
ENSSDUG00000001723	-	99	75.000	ENSMZEG00005024249	-	87	80.357	Maylandia_zebra
ENSSDUG00000001723	-	70	52.838	ENSMAUG00000015149	Ralyl	77	55.022	Mesocricetus_auratus
ENSSDUG00000001723	-	72	54.867	ENSMICG00000005558	RALYL	80	77.215	Microcebus_murinus
ENSSDUG00000001723	-	70	52.838	ENSMOCG00000017371	Ralyl	77	55.022	Microtus_ochrogaster
ENSSDUG00000001723	-	81	82.329	ENSMMOG00000019520	-	98	74.902	Mola_mola
ENSSDUG00000001723	-	85	90.840	ENSMMOG00000021465	-	93	93.208	Mola_mola
ENSSDUG00000001723	-	85	85.115	ENSMALG00000014623	-	87	81.387	Monopterus_albus
ENSSDUG00000001723	-	88	82.836	ENSMALG00000007520	-	90	83.521	Monopterus_albus
ENSSDUG00000001723	-	70	52.402	ENSMUSG00000039717	Ralyl	93	75.949	Mus_musculus
ENSSDUG00000001723	-	72	52.941	ENSMPUG00000010724	RALYL	77	54.148	Mustela_putorius_furo
ENSSDUG00000001723	-	70	52.838	ENSNGAG00000013375	Ralyl	77	55.022	Nannospalax_galili
ENSSDUG00000001723	-	99	73.520	ENSNBRG00000015676	-	93	74.812	Neolamprologus_brichardi
ENSSDUG00000001723	-	97	90.940	ENSNBRG00000004912	-	97	91.468	Neolamprologus_brichardi
ENSSDUG00000001723	-	70	57.407	ENSNLEG00000002702	RALYL	88	49.265	Nomascus_leucogenys
ENSSDUG00000001723	-	58	49.741	ENSOPRG00000013650	-	98	49.215	Ochotona_princeps
ENSSDUG00000001723	-	72	52.941	ENSODEG00000001012	RALYL	78	54.274	Octodon_degus
ENSSDUG00000001723	-	99	75.312	ENSONIG00000018350	-	87	80.427	Oreochromis_niloticus
ENSSDUG00000001723	-	99	87.138	ENSONIG00000007859	-	100	90.675	Oreochromis_niloticus
ENSSDUG00000001723	-	100	78.896	ENSORLG00000009999	-	100	79.221	Oryzias_latipes
ENSSDUG00000001723	-	81	80.843	ENSORLG00000003144	-	85	80.070	Oryzias_latipes
ENSSDUG00000001723	-	100	78.571	ENSORLG00020018228	hnrnpc	100	78.896	Oryzias_latipes_hni
ENSSDUG00000001723	-	100	78.896	ENSORLG00015019755	-	100	79.221	Oryzias_latipes_hsok
ENSSDUG00000001723	-	81	80.843	ENSORLG00015009460	-	85	80.070	Oryzias_latipes_hsok
ENSSDUG00000001723	-	86	79.775	ENSOMEG00000020488	-	100	79.288	Oryzias_melastigma
ENSSDUG00000001723	-	81	83.465	ENSOMEG00000022665	-	86	82.437	Oryzias_melastigma
ENSSDUG00000001723	-	87	44.737	ENSPPAG00000038705	RALYL	92	49.265	Pan_paniscus
ENSSDUG00000001723	-	72	55.507	ENSPPRG00000018612	RALYL	76	57.991	Panthera_pardus
ENSSDUG00000001723	-	72	55.507	ENSPTIG00000020331	RALYL	76	57.991	Panthera_tigris_altaica
ENSSDUG00000001723	-	87	44.737	ENSPTRG00000020381	RALYL	92	49.265	Pan_troglodytes
ENSSDUG00000001723	-	87	44.737	ENSPANG00000029305	RALYL	92	49.265	Papio_anubis
ENSSDUG00000001723	-	92	78.472	ENSPKIG00000022837	-	86	84.727	Paramormyrops_kingsleyae
ENSSDUG00000001723	-	91	81.882	ENSPKIG00000008592	-	87	82.246	Paramormyrops_kingsleyae
ENSSDUG00000001723	-	68	53.540	ENSPSIG00000011135	RALYL	76	54.148	Pelodiscus_sinensis
ENSSDUG00000001723	-	66	80.392	ENSPMGG00000017774	-	94	66.968	Periophthalmus_magnuspinnatus
ENSSDUG00000001723	-	71	87.097	ENSPMGG00000013144	-	82	86.792	Periophthalmus_magnuspinnatus
ENSSDUG00000001723	-	70	52.838	ENSPEMG00000016447	Ralyl	77	55.022	Peromyscus_maniculatus_bairdii
ENSSDUG00000001723	-	68	53.712	ENSPMAG00000002407	RALYL	97	53.333	Petromyzon_marinus
ENSSDUG00000001723	-	95	73.290	ENSPFOG00000002643	-	87	79.152	Poecilia_formosa
ENSSDUG00000001723	-	100	84.466	ENSPFOG00000001583	-	93	87.368	Poecilia_formosa
ENSSDUG00000001723	-	100	83.442	ENSPLAG00000015305	-	93	86.268	Poecilia_latipinna
ENSSDUG00000001723	-	81	81.818	ENSPLAG00000000061	-	87	79.152	Poecilia_latipinna
ENSSDUG00000001723	-	81	81.423	ENSPMEG00000016524	-	87	80.565	Poecilia_mexicana
ENSSDUG00000001723	-	100	84.416	ENSPMEG00000004802	-	93	86.972	Poecilia_mexicana
ENSSDUG00000001723	-	81	81.028	ENSPREG00000001852	-	91	79.273	Poecilia_reticulata
ENSSDUG00000001723	-	92	86.620	ENSPREG00000007928	-	93	86.620	Poecilia_reticulata
ENSSDUG00000001723	-	70	50.246	ENSPPYG00000018710	-	65	78.022	Pongo_abelii
ENSSDUG00000001723	-	72	51.477	ENSPVAG00000010821	RALYL	78	52.991	Pteropus_vampyrus
ENSSDUG00000001723	-	89	87.050	ENSPNYG00000020293	-	92	89.552	Pundamilia_nyererei
ENSSDUG00000001723	-	86	80.741	ENSPNYG00000003747	-	91	81.618	Pundamilia_nyererei
ENSSDUG00000001723	-	80	80.081	ENSPNAG00000015686	hnrnpc	88	81.226	Pygocentrus_nattereri
ENSSDUG00000001723	-	86	74.074	ENSPNAG00000019200	zgc:55733	87	74.909	Pygocentrus_nattereri
ENSSDUG00000001723	-	87	44.737	ENSRROG00000023925	RALYL	82	75.309	Rhinopithecus_roxellana
ENSSDUG00000001723	-	90	75.261	ENSSFOG00015012924	-	80	96.203	Scleropages_formosus
ENSSDUG00000001723	-	83	78.707	ENSSFOG00015012015	-	97	75.391	Scleropages_formosus
ENSSDUG00000001723	-	77	94.558	ENSSMAG00000011147	-	96	75.472	Scophthalmus_maximus
ENSSDUG00000001723	-	95	88.215	ENSSMAG00000013592	-	99	85.531	Scophthalmus_maximus
ENSSDUG00000001723	-	85	86.692	ENSSLDG00000007474	-	92	85.019	Seriola_lalandi_dorsalis
ENSSDUG00000001723	-	100	94.637	ENSSLDG00000007454	-	100	94.637	Seriola_lalandi_dorsalis
ENSSDUG00000001723	-	98	77.389	ENSSPAG00000013996	-	87	81.429	Stegastes_partitus
ENSSDUG00000001723	-	100	95.752	ENSSPAG00000023204	-	100	95.752	Stegastes_partitus
ENSSDUG00000001723	-	70	52.361	ENSTGUG00000011689	RALYL	78	53.712	Taeniopygia_guttata
ENSSDUG00000001723	-	85	86.538	ENSTRUG00000020158	-	89	88.806	Takifugu_rubripes
ENSSDUG00000001723	-	94	73.883	ENSTNIG00000000334	-	97	78.409	Tetraodon_nigroviridis
ENSSDUG00000001723	-	86	82.857	ENSTNIG00000007427	-	87	85.448	Tetraodon_nigroviridis
ENSSDUG00000001723	-	70	48.485	ENSTBEG00000005551	RALYL	88	48.899	Tupaia_belangeri
ENSSDUG00000001723	-	72	49.378	ENSTTRG00000015762	RALYL	78	51.754	Tursiops_truncatus
ENSSDUG00000001723	-	72	50.885	ENSVPAG00000008501	RALYL	76	53.670	Vicugna_pacos
ENSSDUG00000001723	-	86	80.755	ENSXCOG00000006552	-	86	80.303	Xiphophorus_couchianus
ENSSDUG00000001723	-	53	88.957	ENSXCOG00000019434	-	79	81.915	Xiphophorus_couchianus
ENSSDUG00000001723	-	100	83.766	ENSXMAG00000009333	-	93	85.915	Xiphophorus_maculatus
ENSSDUG00000001723	-	81	81.028	ENSXMAG00000022849	-	89	78.909	Xiphophorus_maculatus