EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000001807 (Gene tree)
Gene ID: 111234910
Gene Symbol: pym1
Alias: wibg|zgc:65891|zgc:77281
Full Name: PYM homolog 1%2C exon junction complex associated factor
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 6983 bases
Position: chrBDQW01000468.1:1493642-1500624
Accession: 111234910
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000002324	Mago-bind	PF09282.10	5.1e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000002390	-	4406	XM_022763114	ENSSDUP00000002324	214 (aa)	XP_022618835	UPI000BBE5EEA

Gene Model

Click here to download ENSSDUG00000001807's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03013	RNA transport	KEGG
sdu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000001807's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000001807	pym1	94	58.937	ENSG00000170473	PYM1	99	56.279	Homo_sapiens
ENSSDUG00000001807	pym1	100	88.318	ENSAPOG00000023045	pym1	100	85.981	Acanthochromis_polyacanthus
ENSSDUG00000001807	pym1	92	56.436	ENSAMEG00000003091	PYM1	97	53.555	Ailuropoda_melanoleuca
ENSSDUG00000001807	pym1	100	88.426	ENSACIG00000012769	pym1	100	87.963	Amphilophus_citrinellus
ENSSDUG00000001807	pym1	100	88.785	ENSAOCG00000021358	pym1	100	86.449	Amphiprion_ocellaris
ENSSDUG00000001807	pym1	100	88.785	ENSAPEG00000022679	pym1	100	86.449	Amphiprion_percula
ENSSDUG00000001807	pym1	100	85.047	ENSATEG00000024022	pym1	100	86.449	Anabas_testudineus
ENSSDUG00000001807	pym1	94	57.547	ENSACAG00000005714	PYM1	99	56.054	Anolis_carolinensis
ENSSDUG00000001807	pym1	94	58.454	ENSANAG00000036967	PYM1	99	55.814	Aotus_nancymaae
ENSSDUG00000001807	pym1	99	59.633	ENSAMXG00000007650	pym1	98	64.151	Astyanax_mexicanus
ENSSDUG00000001807	pym1	94	60.476	ENSBTAG00000031146	PYM1	99	57.407	Bos_taurus
ENSSDUG00000001807	pym1	94	58.937	ENSCJAG00000041077	PYM1	99	56.279	Callithrix_jacchus
ENSSDUG00000001807	pym1	94	60.386	ENSCAFG00000000076	PYM1	99	57.209	Canis_familiaris
ENSSDUG00000001807	pym1	94	60.386	ENSCAFG00020026099	PYM1	99	57.209	Canis_lupus_dingo
ENSSDUG00000001807	pym1	94	59.716	ENSCHIG00000026207	PYM1	99	56.682	Capra_hircus
ENSSDUG00000001807	pym1	94	56.938	ENSTSYG00000000787	PYM1	99	54.884	Carlito_syrichta
ENSSDUG00000001807	pym1	89	56.281	ENSCAPG00000010374	PYM1	98	53.110	Cavia_aperea
ENSSDUG00000001807	pym1	94	57.820	ENSCPOG00000031546	PYM1	99	54.751	Cavia_porcellus
ENSSDUG00000001807	pym1	94	58.937	ENSCCAG00000026187	PYM1	99	56.279	Cebus_capucinus
ENSSDUG00000001807	pym1	94	59.420	ENSCATG00000018801	PYM1	99	56.744	Cercocebus_atys
ENSSDUG00000001807	pym1	94	58.173	ENSCLAG00000007964	PYM1	99	56.221	Chinchilla_lanigera
ENSSDUG00000001807	pym1	90	58.163	ENSCSAG00000005291	PYM1	97	55.392	Chlorocebus_sabaeus
ENSSDUG00000001807	pym1	98	41.096	ENSCING00000006448	-	99	40.553	Ciona_intestinalis
ENSSDUG00000001807	pym1	98	38.667	ENSCSAVG00000009805	-	94	38.222	Ciona_savignyi
ENSSDUG00000001807	pym1	94	59.420	ENSCANG00000020338	-	99	56.744	Colobus_angolensis_palliatus
ENSSDUG00000001807	pym1	93	57.353	ENSCANG00000019757	-	85	54.680	Colobus_angolensis_palliatus
ENSSDUG00000001807	pym1	94	55.769	ENSCGRG00001018051	-	99	56.019	Cricetulus_griseus_chok1gshd
ENSSDUG00000001807	pym1	88	51.852	ENSCGRG00001004231	-	96	49.524	Cricetulus_griseus_chok1gshd
ENSSDUG00000001807	pym1	94	55.769	ENSCGRG00000012495	-	99	56.019	Cricetulus_griseus_crigri
ENSSDUG00000001807	pym1	88	51.852	ENSCGRG00000018933	-	96	49.524	Cricetulus_griseus_crigri
ENSSDUG00000001807	pym1	100	74.074	ENSCSEG00000021531	pym1	100	74.537	Cynoglossus_semilaevis
ENSSDUG00000001807	pym1	99	80.095	ENSCVAG00000017360	pym1	88	80.095	Cyprinodon_variegatus
ENSSDUG00000001807	pym1	100	56.542	ENSDARG00000046024	pym1	100	54.206	Danio_rerio
ENSSDUG00000001807	pym1	94	55.288	ENSDNOG00000048414	PYM1	90	53.488	Dasypus_novemcinctus
ENSSDUG00000001807	pym1	94	58.937	ENSDORG00000029448	Pym1	99	56.744	Dipodomys_ordii
ENSSDUG00000001807	pym1	90	53.769	ENSETEG00000004461	-	98	52.451	Echinops_telfairi
ENSSDUG00000001807	pym1	89	56.186	ENSEASG00005002271	PYM1	85	53.465	Equus_asinus_asinus
ENSSDUG00000001807	pym1	94	57.895	ENSECAG00000011870	PYM1	99	55.349	Equus_caballus
ENSSDUG00000001807	pym1	100	68.692	ENSELUG00000024250	pym1	100	68.224	Esox_lucius
ENSSDUG00000001807	pym1	94	59.524	ENSFCAG00000013967	PYM1	99	56.279	Felis_catus
ENSSDUG00000001807	pym1	94	60.386	ENSFDAG00000006314	PYM1	99	57.209	Fukomys_damarensis
ENSSDUG00000001807	pym1	94	82.927	ENSFHEG00000005884	pym1	100	80.645	Fundulus_heteroclitus
ENSSDUG00000001807	pym1	94	63.682	ENSGMOG00000007239	pym1	97	63.333	Gadus_morhua
ENSSDUG00000001807	pym1	94	61.463	ENSGALG00000046169	PYM1	99	61.111	Gallus_gallus
ENSSDUG00000001807	pym1	100	82.192	ENSGAFG00000003280	pym1	100	79.909	Gambusia_affinis
ENSSDUG00000001807	pym1	100	72.897	ENSGACG00000010703	pym1	100	73.364	Gasterosteus_aculeatus
ENSSDUG00000001807	pym1	90	55.172	ENSGAGG00000001973	PYM1	89	55.140	Gopherus_agassizii
ENSSDUG00000001807	pym1	94	58.454	ENSGGOG00000043246	PYM1	99	55.814	Gorilla_gorilla
ENSSDUG00000001807	pym1	94	87.129	ENSHBUG00000012719	pym1	100	86.449	Haplochromis_burtoni
ENSSDUG00000001807	pym1	94	58.373	ENSHGLG00000017155	PYM1	99	55.814	Heterocephalus_glaber_female
ENSSDUG00000001807	pym1	94	58.373	ENSHGLG00100015341	PYM1	99	55.814	Heterocephalus_glaber_male
ENSSDUG00000001807	pym1	100	72.558	ENSHCOG00000007987	pym1	86	71.628	Hippocampus_comes
ENSSDUG00000001807	pym1	99	67.442	ENSIPUG00000005975	wibga	99	66.512	Ictalurus_punctatus
ENSSDUG00000001807	pym1	94	58.294	ENSSTOG00000014206	PYM1	99	55.349	Ictidomys_tridecemlineatus
ENSSDUG00000001807	pym1	94	57.005	ENSJJAG00000013338	Pym1	99	54.245	Jaculus_jaculus
ENSSDUG00000001807	pym1	100	81.448	ENSKMAG00000006351	pym1	99	81.364	Kryptolebias_marmoratus
ENSSDUG00000001807	pym1	100	80.374	ENSLBEG00000015707	pym1	100	78.505	Labrus_bergylta
ENSSDUG00000001807	pym1	90	60.591	ENSLACG00000014398	PYM1	94	59.813	Latimeria_chalumnae
ENSSDUG00000001807	pym1	94	59.420	ENSLAFG00000002369	PYM1	99	57.209	Loxodonta_africana
ENSSDUG00000001807	pym1	94	59.420	ENSMFAG00000003048	PYM1	99	56.744	Macaca_fascicularis
ENSSDUG00000001807	pym1	94	59.420	ENSMMUG00000011002	PYM1	99	56.744	Macaca_mulatta
ENSSDUG00000001807	pym1	94	59.420	ENSMNEG00000034677	PYM1	99	56.744	Macaca_nemestrina
ENSSDUG00000001807	pym1	94	59.420	ENSMLEG00000007971	PYM1	99	56.744	Mandrillus_leucophaeus
ENSSDUG00000001807	pym1	100	87.615	ENSMAMG00000001588	pym1	100	86.239	Mastacembelus_armatus
ENSSDUG00000001807	pym1	94	86.634	ENSMZEG00005026458	pym1	100	85.981	Maylandia_zebra
ENSSDUG00000001807	pym1	94	56.522	ENSMAUG00000007318	Pym1	99	56.279	Mesocricetus_auratus
ENSSDUG00000001807	pym1	94	58.454	ENSMICG00000032962	PYM1	99	55.349	Microcebus_murinus
ENSSDUG00000001807	pym1	94	56.098	ENSMOCG00000010208	Pym1	99	55.607	Microtus_ochrogaster
ENSSDUG00000001807	pym1	100	73.832	ENSMMOG00000009301	pym1	100	71.495	Mola_mola
ENSSDUG00000001807	pym1	100	84.722	ENSMALG00000013496	pym1	100	85.185	Monopterus_albus
ENSSDUG00000001807	pym1	94	57.005	MGP_CAROLIEiJ_G0015953	Pym1	99	55.814	Mus_caroli
ENSSDUG00000001807	pym1	94	56.039	ENSMUSG00000064030	Pym1	99	54.884	Mus_musculus
ENSSDUG00000001807	pym1	94	58.333	MGP_PahariEiJ_G0031131	Pym1	98	57.075	Mus_pahari
ENSSDUG00000001807	pym1	94	56.039	MGP_SPRETEiJ_G0016778	Pym1	99	54.884	Mus_spretus
ENSSDUG00000001807	pym1	94	58.937	ENSMPUG00000000931	PYM1	99	56.279	Mustela_putorius_furo
ENSSDUG00000001807	pym1	94	55.238	ENSMLUG00000003586	PYM1	99	52.804	Myotis_lucifugus
ENSSDUG00000001807	pym1	90	55.838	ENSNGAG00000019207	Pym1	92	52.683	Nannospalax_galili
ENSSDUG00000001807	pym1	100	86.916	ENSNBRG00000006951	pym1	100	86.916	Neolamprologus_brichardi
ENSSDUG00000001807	pym1	94	58.937	ENSNLEG00000017588	PYM1	99	56.279	Nomascus_leucogenys
ENSSDUG00000001807	pym1	88	54.688	ENSMEUG00000001017	PYM1	98	52.451	Notamacropus_eugenii
ENSSDUG00000001807	pym1	93	54.455	ENSOPRG00000007797	PYM1	96	51.905	Ochotona_princeps
ENSSDUG00000001807	pym1	94	58.937	ENSODEG00000004289	PYM1	99	55.814	Octodon_degus
ENSSDUG00000001807	pym1	94	88.614	ENSONIG00000016740	pym1	100	87.850	Oreochromis_niloticus
ENSSDUG00000001807	pym1	90	56.566	ENSOCUG00000025969	PYM1	85	54.412	Oryctolagus_cuniculus
ENSSDUG00000001807	pym1	100	76.744	ENSORLG00000030592	pym1	100	74.766	Oryzias_latipes
ENSSDUG00000001807	pym1	100	73.148	ENSORLG00020011264	pym1	100	73.023	Oryzias_latipes_hni
ENSSDUG00000001807	pym1	100	77.209	ENSORLG00015005287	pym1	100	75.234	Oryzias_latipes_hsok
ENSSDUG00000001807	pym1	100	78.605	ENSOMEG00000022250	pym1	100	78.605	Oryzias_melastigma
ENSSDUG00000001807	pym1	90	58.163	ENSOGAG00000007038	PYM1	93	55.392	Otolemur_garnettii
ENSSDUG00000001807	pym1	94	59.716	ENSOARG00000010856	PYM1	99	56.682	Ovis_aries
ENSSDUG00000001807	pym1	94	58.937	ENSPPAG00000043630	PYM1	99	56.279	Pan_paniscus
ENSSDUG00000001807	pym1	94	59.048	ENSPPRG00000013243	PYM1	99	55.814	Panthera_pardus
ENSSDUG00000001807	pym1	94	59.524	ENSPTIG00000017380	PYM1	99	55.814	Panthera_tigris_altaica
ENSSDUG00000001807	pym1	94	58.937	ENSPTRG00000005067	PYM1	99	56.279	Pan_troglodytes
ENSSDUG00000001807	pym1	94	59.903	ENSPANG00000009562	PYM1	99	57.209	Papio_anubis
ENSSDUG00000001807	pym1	99	67.713	ENSPKIG00000006301	pym1	99	66.216	Paramormyrops_kingsleyae
ENSSDUG00000001807	pym1	94	53.810	ENSPSIG00000003043	PYM1	99	53.846	Pelodiscus_sinensis
ENSSDUG00000001807	pym1	99	67.606	ENSPMGG00000023161	pym1	99	66.197	Periophthalmus_magnuspinnatus
ENSSDUG00000001807	pym1	94	54.854	ENSPEMG00000009372	Pym1	99	55.556	Peromyscus_maniculatus_bairdii
ENSSDUG00000001807	pym1	88	55.208	ENSPCIG00000024658	PYM1	92	52.451	Phascolarctos_cinereus
ENSSDUG00000001807	pym1	100	82.488	ENSPFOG00000008193	pym1	100	81.395	Poecilia_formosa
ENSSDUG00000001807	pym1	100	82.949	ENSPLAG00000009228	pym1	100	81.567	Poecilia_latipinna
ENSSDUG00000001807	pym1	100	82.488	ENSPMEG00000001505	pym1	100	81.106	Poecilia_mexicana
ENSSDUG00000001807	pym1	91	56.566	ENSPPYG00000004635	PYM1	97	53.922	Pongo_abelii
ENSSDUG00000001807	pym1	94	58.937	ENSPCOG00000019706	PYM1	99	55.349	Propithecus_coquereli
ENSSDUG00000001807	pym1	91	57.500	ENSPVAG00000011437	PYM1	97	55.340	Pteropus_vampyrus
ENSSDUG00000001807	pym1	94	85.149	ENSPNYG00000012871	pym1	100	84.112	Pundamilia_nyererei
ENSSDUG00000001807	pym1	99	65.116	ENSPNAG00000018833	pym1	99	66.047	Pygocentrus_nattereri
ENSSDUG00000001807	pym1	80	50.581	ENSRNOG00000049415	AABR07055413.1	98	40.654	Rattus_norvegicus
ENSSDUG00000001807	pym1	94	54.412	ENSRNOG00000058130	Pym1	97	54.930	Rattus_norvegicus
ENSSDUG00000001807	pym1	94	55.556	ENSRBIG00000033362	PYM1	98	53.953	Rhinopithecus_bieti
ENSSDUG00000001807	pym1	94	59.420	ENSRROG00000043620	PYM1	99	56.744	Rhinopithecus_roxellana
ENSSDUG00000001807	pym1	94	58.937	ENSSBOG00000029393	PYM1	99	56.279	Saimiri_boliviensis_boliviensis
ENSSDUG00000001807	pym1	93	57.635	ENSSHAG00000008280	PYM1	99	54.419	Sarcophilus_harrisii
ENSSDUG00000001807	pym1	93	62.844	ENSSFOG00015021475	pym1	100	62.844	Scleropages_formosus
ENSSDUG00000001807	pym1	100	82.243	ENSSMAG00000020912	pym1	100	80.841	Scophthalmus_maximus
ENSSDUG00000001807	pym1	100	98.148	ENSSLDG00000013730	pym1	100	98.148	Seriola_lalandi_dorsalis
ENSSDUG00000001807	pym1	90	58.081	ENSSARG00000009569	PYM1	98	55.882	Sorex_araneus
ENSSDUG00000001807	pym1	91	55.000	ENSSPUG00000015059	PYM1	97	53.555	Sphenodon_punctatus
ENSSDUG00000001807	pym1	100	90.233	ENSSPAG00000020100	pym1	100	90.233	Stegastes_partitus
ENSSDUG00000001807	pym1	94	58.852	ENSSSCG00000040825	PYM1	99	56.744	Sus_scrofa
ENSSDUG00000001807	pym1	99	77.465	ENSTRUG00000021367	pym1	100	76.995	Takifugu_rubripes
ENSSDUG00000001807	pym1	100	65.766	ENSTNIG00000012534	pym1	100	71.749	Tetraodon_nigroviridis
ENSSDUG00000001807	pym1	88	56.477	ENSTBEG00000004208	PYM1	98	51.961	Tupaia_belangeri
ENSSDUG00000001807	pym1	91	59.391	ENSTTRG00000014971	PYM1	97	56.311	Tursiops_truncatus
ENSSDUG00000001807	pym1	94	57.895	ENSUAMG00000014521	PYM1	99	55.814	Ursus_americanus
ENSSDUG00000001807	pym1	89	56.633	ENSUMAG00000016241	PYM1	85	53.695	Ursus_maritimus
ENSSDUG00000001807	pym1	94	59.903	ENSVVUG00000022749	PYM1	99	56.744	Vulpes_vulpes
ENSSDUG00000001807	pym1	94	62.439	ENSXETG00000021850	pym1	99	60.185	Xenopus_tropicalis
ENSSDUG00000001807	pym1	100	82.949	ENSXMAG00000011649	pym1	100	81.567	Xiphophorus_maculatus