EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000001829 (Gene tree)
Gene ID: 111235516
Gene Symbol: rpusd1
Alias: fe26f08|wu:fe26f08|zgc:153465
Full Name: RNA pseudouridine synthase domain containing 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 4494 bases
Position: chrBDQW01000505.1:209367-213860
Accession: 111235516
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000002347	PseudoU_synth_2	PF00849.22	6.2e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000002412	-	2283	XM_022763972	ENSSDUP00000002347	319 (aa)	XP_022619693	UPI000BBE4AF6

Gene Model

Click here to download ENSSDUG00000001829's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000001829's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000001829	rpusd1	95	58.361	ENSG00000007376	RPUSD1	99	68.862	Homo_sapiens
ENSSDUG00000001829	rpusd1	97	85.161	ENSAPOG00000022221	rpusd1	100	85.484	Acanthochromis_polyacanthus
ENSSDUG00000001829	rpusd1	95	59.672	ENSAMEG00000007461	RPUSD1	84	66.798	Ailuropoda_melanoleuca
ENSSDUG00000001829	rpusd1	97	86.774	ENSACIG00000015863	rpusd1	100	83.226	Amphilophus_citrinellus
ENSSDUG00000001829	rpusd1	100	87.774	ENSAOCG00000021975	rpusd1	100	87.774	Amphiprion_ocellaris
ENSSDUG00000001829	rpusd1	100	88.088	ENSAPEG00000001316	rpusd1	100	88.088	Amphiprion_percula
ENSSDUG00000001829	rpusd1	97	88.710	ENSATEG00000002984	rpusd1	100	88.710	Anabas_testudineus
ENSSDUG00000001829	rpusd1	75	58.921	ENSAPLG00000012316	RPUSD1	81	64.103	Anas_platyrhynchos
ENSSDUG00000001829	rpusd1	95	65.132	ENSACAG00000008953	RPUSD1	85	72.441	Anolis_carolinensis
ENSSDUG00000001829	rpusd1	95	58.689	ENSANAG00000024709	RPUSD1	81	66.798	Aotus_nancymaae
ENSSDUG00000001829	rpusd1	97	87.460	ENSACLG00000013692	rpusd1	100	82.637	Astatotilapia_calliptera
ENSSDUG00000001829	rpusd1	96	68.404	ENSAMXG00000019802	rpusd1	86	75.197	Astyanax_mexicanus
ENSSDUG00000001829	rpusd1	95	60.984	ENSBTAG00000000179	RPUSD1	82	68.379	Bos_taurus
ENSSDUG00000001829	rpusd1	95	58.689	ENSCJAG00000012253	RPUSD1	81	66.798	Callithrix_jacchus
ENSSDUG00000001829	rpusd1	95	59.344	ENSCAFG00000019614	RPUSD1	84	66.798	Canis_familiaris
ENSSDUG00000001829	rpusd1	95	59.344	ENSCAFG00020008891	RPUSD1	84	66.798	Canis_lupus_dingo
ENSSDUG00000001829	rpusd1	95	61.639	ENSCHIG00000012872	RPUSD1	82	69.170	Capra_hircus
ENSSDUG00000001829	rpusd1	95	58.689	ENSTSYG00000036934	RPUSD1	82	71.171	Carlito_syrichta
ENSSDUG00000001829	rpusd1	95	58.361	ENSCAPG00000014219	RPUSD1	83	66.008	Cavia_aperea
ENSSDUG00000001829	rpusd1	95	58.361	ENSCPOG00000034604	RPUSD1	83	66.008	Cavia_porcellus
ENSSDUG00000001829	rpusd1	95	58.689	ENSCCAG00000034385	RPUSD1	98	58.689	Cebus_capucinus
ENSSDUG00000001829	rpusd1	95	59.016	ENSCATG00000042983	RPUSD1	82	72.072	Cercocebus_atys
ENSSDUG00000001829	rpusd1	95	58.361	ENSCLAG00000013966	RPUSD1	83	66.403	Chinchilla_lanigera
ENSSDUG00000001829	rpusd1	95	58.689	ENSCSAG00000012121	RPUSD1	81	67.194	Chlorocebus_sabaeus
ENSSDUG00000001829	rpusd1	95	62.829	ENSCPBG00000021101	RPUSD1	87	68.182	Chrysemys_picta_bellii
ENSSDUG00000001829	rpusd1	79	67.194	ENSCANG00000028576	RPUSD1	90	67.194	Colobus_angolensis_palliatus
ENSSDUG00000001829	rpusd1	95	58.497	ENSCGRG00001014253	Rpusd1	83	65.613	Cricetulus_griseus_chok1gshd
ENSSDUG00000001829	rpusd1	95	58.497	ENSCGRG00000017995	Rpusd1	83	65.613	Cricetulus_griseus_crigri
ENSSDUG00000001829	rpusd1	95	85.855	ENSCSEG00000018512	rpusd1	89	90.421	Cynoglossus_semilaevis
ENSSDUG00000001829	rpusd1	97	81.877	ENSCVAG00000022746	rpusd1	100	81.877	Cyprinodon_variegatus
ENSSDUG00000001829	rpusd1	95	71.053	ENSDARG00000060192	rpusd1	86	78.175	Danio_rerio
ENSSDUG00000001829	rpusd1	95	58.033	ENSDNOG00000003721	RPUSD1	82	65.613	Dasypus_novemcinctus
ENSSDUG00000001829	rpusd1	95	59.344	ENSDORG00000026656	Rpusd1	83	67.984	Dipodomys_ordii
ENSSDUG00000001829	rpusd1	93	47.284	ENSEBUG00000008767	rpusd1	79	52.107	Eptatretus_burgeri
ENSSDUG00000001829	rpusd1	95	59.615	ENSEASG00005018421	RPUSD1	61	67.984	Equus_asinus_asinus
ENSSDUG00000001829	rpusd1	97	73.139	ENSELUG00000014307	rpusd1	90	72.168	Esox_lucius
ENSSDUG00000001829	rpusd1	95	59.672	ENSFCAG00000010359	RPUSD1	82	72.072	Felis_catus
ENSSDUG00000001829	rpusd1	95	64.474	ENSFALG00000003211	RPUSD1	85	69.685	Ficedula_albicollis
ENSSDUG00000001829	rpusd1	95	58.361	ENSFDAG00000013398	RPUSD1	83	65.217	Fukomys_damarensis
ENSSDUG00000001829	rpusd1	97	79.612	ENSFHEG00000004736	rpusd1	100	80.906	Fundulus_heteroclitus
ENSSDUG00000001829	rpusd1	97	71.521	ENSGMOG00000010756	rpusd1	88	77.037	Gadus_morhua
ENSSDUG00000001829	rpusd1	95	64.803	ENSGALG00000005315	RPUSD1	85	70.543	Gallus_gallus
ENSSDUG00000001829	rpusd1	97	81.553	ENSGAFG00000009886	rpusd1	100	81.553	Gambusia_affinis
ENSSDUG00000001829	rpusd1	97	88.997	ENSGACG00000014276	rpusd1	100	88.997	Gasterosteus_aculeatus
ENSSDUG00000001829	rpusd1	95	62.829	ENSGAGG00000004181	RPUSD1	87	68.182	Gopherus_agassizii
ENSSDUG00000001829	rpusd1	95	59.150	ENSGGOG00000013997	RPUSD1	82	72.072	Gorilla_gorilla
ENSSDUG00000001829	rpusd1	97	87.781	ENSHBUG00000023728	rpusd1	100	82.958	Haplochromis_burtoni
ENSSDUG00000001829	rpusd1	95	57.705	ENSHGLG00000002595	RPUSD1	83	65.217	Heterocephalus_glaber_female
ENSSDUG00000001829	rpusd1	95	57.705	ENSHGLG00100014303	RPUSD1	83	65.217	Heterocephalus_glaber_male
ENSSDUG00000001829	rpusd1	96	80.065	ENSHCOG00000002390	rpusd1	92	84.091	Hippocampus_comes
ENSSDUG00000001829	rpusd1	95	66.667	ENSIPUG00000001570	rpusd1	86	70.881	Ictalurus_punctatus
ENSSDUG00000001829	rpusd1	95	59.477	ENSSTOG00000004276	RPUSD1	83	66.403	Ictidomys_tridecemlineatus
ENSSDUG00000001829	rpusd1	95	60.328	ENSJJAG00000015696	Rpusd1	83	67.589	Jaculus_jaculus
ENSSDUG00000001829	rpusd1	97	81.290	ENSKMAG00000017287	rpusd1	100	81.290	Kryptolebias_marmoratus
ENSSDUG00000001829	rpusd1	97	85.484	ENSLBEG00000022502	rpusd1	100	85.484	Labrus_bergylta
ENSSDUG00000001829	rpusd1	97	85.484	ENSLBEG00000013354	RPUSD1	100	85.484	Labrus_bergylta
ENSSDUG00000001829	rpusd1	95	61.842	ENSLACG00000008869	RPUSD1	83	68.924	Latimeria_chalumnae
ENSSDUG00000001829	rpusd1	67	82.710	ENSLOCG00000005682	rpusd1	99	82.710	Lepisosteus_oculatus
ENSSDUG00000001829	rpusd1	95	57.705	ENSLAFG00000002115	RPUSD1	84	65.613	Loxodonta_africana
ENSSDUG00000001829	rpusd1	95	59.016	ENSMFAG00000003961	RPUSD1	82	72.072	Macaca_fascicularis
ENSSDUG00000001829	rpusd1	95	59.016	ENSMMUG00000000842	RPUSD1	82	72.072	Macaca_mulatta
ENSSDUG00000001829	rpusd1	95	59.016	ENSMNEG00000042712	RPUSD1	82	72.072	Macaca_nemestrina
ENSSDUG00000001829	rpusd1	95	59.016	ENSMLEG00000030591	RPUSD1	82	72.072	Mandrillus_leucophaeus
ENSSDUG00000001829	rpusd1	97	90.354	ENSMAMG00000004735	rpusd1	100	86.174	Mastacembelus_armatus
ENSSDUG00000001829	rpusd1	97	87.460	ENSMZEG00005003214	rpusd1	100	82.637	Maylandia_zebra
ENSSDUG00000001829	rpusd1	94	64.120	ENSMGAG00000005447	RPUSD1	85	69.685	Meleagris_gallopavo
ENSSDUG00000001829	rpusd1	79	58.498	ENSMAUG00000019998	Rpusd1	96	58.498	Mesocricetus_auratus
ENSSDUG00000001829	rpusd1	95	59.016	ENSMICG00000017561	RPUSD1	78	75.490	Microcebus_murinus
ENSSDUG00000001829	rpusd1	95	58.689	ENSMOCG00000014082	Rpusd1	83	65.613	Microtus_ochrogaster
ENSSDUG00000001829	rpusd1	96	79.805	ENSMMOG00000012569	rpusd1	99	81.759	Mola_mola
ENSSDUG00000001829	rpusd1	96	62.092	ENSMODG00000016882	RPUSD1	82	70.518	Monodelphis_domestica
ENSSDUG00000001829	rpusd1	97	87.460	ENSMALG00000017818	rpusd1	100	84.244	Monopterus_albus
ENSSDUG00000001829	rpusd1	95	59.672	MGP_CAROLIEiJ_G0021244	Rpusd1	83	66.008	Mus_caroli
ENSSDUG00000001829	rpusd1	95	59.672	ENSMUSG00000041199	Rpusd1	83	66.403	Mus_musculus
ENSSDUG00000001829	rpusd1	95	58.689	MGP_PahariEiJ_G0023562	Rpusd1	82	66.008	Mus_pahari
ENSSDUG00000001829	rpusd1	95	59.672	MGP_SPRETEiJ_G0022155	Rpusd1	83	66.403	Mus_spretus
ENSSDUG00000001829	rpusd1	93	59.667	ENSMPUG00000015897	RPUSD1	82	66.935	Mustela_putorius_furo
ENSSDUG00000001829	rpusd1	95	59.016	ENSMLUG00000001089	RPUSD1	85	64.773	Myotis_lucifugus
ENSSDUG00000001829	rpusd1	95	59.344	ENSNGAG00000003595	Rpusd1	98	58.361	Nannospalax_galili
ENSSDUG00000001829	rpusd1	97	84.566	ENSNBRG00000006457	rpusd1	100	81.150	Neolamprologus_brichardi
ENSSDUG00000001829	rpusd1	52	50.296	ENSNLEG00000008424	-	97	50.296	Nomascus_leucogenys
ENSSDUG00000001829	rpusd1	95	62.829	ENSMEUG00000016049	RPUSD1	85	69.531	Notamacropus_eugenii
ENSSDUG00000001829	rpusd1	95	52.787	ENSOPRG00000008340	RPUSD1	85	58.498	Ochotona_princeps
ENSSDUG00000001829	rpusd1	95	58.361	ENSODEG00000016945	RPUSD1	83	66.008	Octodon_degus
ENSSDUG00000001829	rpusd1	96	87.662	ENSONIG00000015672	rpusd1	86	89.773	Oreochromis_niloticus
ENSSDUG00000001829	rpusd1	97	78.710	ENSORLG00000013009	rpusd1	85	85.328	Oryzias_latipes
ENSSDUG00000001829	rpusd1	97	78.710	ENSORLG00020010382	rpusd1	85	84.942	Oryzias_latipes_hni
ENSSDUG00000001829	rpusd1	97	77.742	ENSORLG00015021354	rpusd1	85	84.170	Oryzias_latipes_hsok
ENSSDUG00000001829	rpusd1	97	77.097	ENSOMEG00000021426	rpusd1	100	76.774	Oryzias_melastigma
ENSSDUG00000001829	rpusd1	95	58.361	ENSOGAG00000003795	RPUSD1	81	66.403	Otolemur_garnettii
ENSSDUG00000001829	rpusd1	95	61.311	ENSOARG00000014254	RPUSD1	82	68.775	Ovis_aries
ENSSDUG00000001829	rpusd1	95	58.689	ENSPPAG00000034797	RPUSD1	82	72.072	Pan_paniscus
ENSSDUG00000001829	rpusd1	95	60.000	ENSPPRG00000012389	RPUSD1	82	72.072	Panthera_pardus
ENSSDUG00000001829	rpusd1	98	58.861	ENSPTIG00000008545	RPUSD1	82	72.072	Panthera_tigris_altaica
ENSSDUG00000001829	rpusd1	95	58.689	ENSPTRG00000007565	RPUSD1	82	72.072	Pan_troglodytes
ENSSDUG00000001829	rpusd1	95	59.016	ENSPANG00000024401	RPUSD1	82	72.072	Papio_anubis
ENSSDUG00000001829	rpusd1	99	69.497	ENSPKIG00000018890	rpusd1	80	75.940	Paramormyrops_kingsleyae
ENSSDUG00000001829	rpusd1	95	64.803	ENSPSIG00000013945	RPUSD1	87	70.342	Pelodiscus_sinensis
ENSSDUG00000001829	rpusd1	97	74.757	ENSPMGG00000014950	rpusd1	86	82.609	Periophthalmus_magnuspinnatus
ENSSDUG00000001829	rpusd1	95	59.016	ENSPEMG00000000497	Rpusd1	83	66.008	Peromyscus_maniculatus_bairdii
ENSSDUG00000001829	rpusd1	96	53.896	ENSPMAG00000001563	rpusd1	84	59.533	Petromyzon_marinus
ENSSDUG00000001829	rpusd1	96	64.379	ENSPCIG00000021216	-	79	71.542	Phascolarctos_cinereus
ENSSDUG00000001829	rpusd1	97	81.877	ENSPFOG00000007946	rpusd1	100	77.670	Poecilia_formosa
ENSSDUG00000001829	rpusd1	97	82.201	ENSPLAG00000011925	rpusd1	100	77.670	Poecilia_latipinna
ENSSDUG00000001829	rpusd1	97	81.877	ENSPMEG00000002910	rpusd1	100	77.670	Poecilia_mexicana
ENSSDUG00000001829	rpusd1	97	83.495	ENSPREG00000019851	rpusd1	100	83.495	Poecilia_reticulata
ENSSDUG00000001829	rpusd1	95	46.230	ENSPCAG00000002258	RPUSD1	84	51.383	Procavia_capensis
ENSSDUG00000001829	rpusd1	95	58.033	ENSPCOG00000022582	RPUSD1	78	75.490	Propithecus_coquereli
ENSSDUG00000001829	rpusd1	95	54.754	ENSPVAG00000013104	RPUSD1	81	61.660	Pteropus_vampyrus
ENSSDUG00000001829	rpusd1	97	87.781	ENSPNYG00000024076	rpusd1	100	82.958	Pundamilia_nyererei
ENSSDUG00000001829	rpusd1	96	66.667	ENSPNAG00000013806	rpusd1	86	73.228	Pygocentrus_nattereri
ENSSDUG00000001829	rpusd1	95	59.672	ENSRNOG00000023639	Rpusd1	83	66.403	Rattus_norvegicus
ENSSDUG00000001829	rpusd1	95	59.344	ENSRBIG00000030238	RPUSD1	82	72.072	Rhinopithecus_bieti
ENSSDUG00000001829	rpusd1	95	59.344	ENSRROG00000036663	RPUSD1	82	72.072	Rhinopithecus_roxellana
ENSSDUG00000001829	rpusd1	95	60.328	ENSSBOG00000033063	RPUSD1	84	67.589	Saimiri_boliviensis_boliviensis
ENSSDUG00000001829	rpusd1	95	62.171	ENSSHAG00000013500	RPUSD1	83	70.120	Sarcophilus_harrisii
ENSSDUG00000001829	rpusd1	95	72.368	ENSSFOG00015014394	rpusd1	84	80.556	Scleropages_formosus
ENSSDUG00000001829	rpusd1	100	90.596	ENSSMAG00000008045	rpusd1	96	90.596	Scophthalmus_maximus
ENSSDUG00000001829	rpusd1	100	100.000	ENSSLDG00000020853	rpusd1	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000001829	rpusd1	52	72.455	ENSSARG00000011187	-	100	72.455	Sorex_araneus
ENSSDUG00000001829	rpusd1	61	58.031	ENSSPUG00000005119	-	81	67.320	Sphenodon_punctatus
ENSSDUG00000001829	rpusd1	97	91.935	ENSSPAG00000012708	rpusd1	100	91.935	Stegastes_partitus
ENSSDUG00000001829	rpusd1	95	59.344	ENSSSCG00000008000	RPUSD1	98	67.717	Sus_scrofa
ENSSDUG00000001829	rpusd1	79	70.916	ENSTGUG00000015375	RPUSD1	99	70.916	Taeniopygia_guttata
ENSSDUG00000001829	rpusd1	97	82.581	ENSTRUG00000003041	rpusd1	99	82.581	Takifugu_rubripes
ENSSDUG00000001829	rpusd1	96	73.529	ENSTNIG00000002660	rpusd1	96	82.759	Tetraodon_nigroviridis
ENSSDUG00000001829	rpusd1	95	59.935	ENSTTRG00000010167	RPUSD1	81	67.589	Tursiops_truncatus
ENSSDUG00000001829	rpusd1	95	59.016	ENSUAMG00000012736	RPUSD1	84	66.403	Ursus_americanus
ENSSDUG00000001829	rpusd1	95	59.016	ENSUMAG00000021174	RPUSD1	91	66.403	Ursus_maritimus
ENSSDUG00000001829	rpusd1	95	59.672	ENSVVUG00000012357	RPUSD1	84	66.403	Vulpes_vulpes
ENSSDUG00000001829	rpusd1	95	63.487	ENSXETG00000007184	rpusd1	83	69.721	Xenopus_tropicalis
ENSSDUG00000001829	rpusd1	97	81.877	ENSXCOG00000017930	rpusd1	100	81.877	Xiphophorus_couchianus
ENSSDUG00000001829	rpusd1	97	82.201	ENSXMAG00000024084	rpusd1	100	82.201	Xiphophorus_maculatus