EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000002174 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 7027 bases
Position: chrBDQW01000036.1:1142371-1149397
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000002793	zf-C2H2	PF00096.26	9.5e-51	1	8
ENSSDUP00000002793	zf-C2H2	PF00096.26	9.5e-51	2	8
ENSSDUP00000002793	zf-C2H2	PF00096.26	9.5e-51	3	8
ENSSDUP00000002793	zf-C2H2	PF00096.26	9.5e-51	4	8
ENSSDUP00000002793	zf-C2H2	PF00096.26	9.5e-51	5	8
ENSSDUP00000002793	zf-C2H2	PF00096.26	9.5e-51	6	8
ENSSDUP00000002793	zf-C2H2	PF00096.26	9.5e-51	7	8
ENSSDUP00000002793	zf-C2H2	PF00096.26	9.5e-51	8	8
ENSSDUP00000002793	zf-met	PF12874.7	2.5e-07	1	2
ENSSDUP00000002793	zf-met	PF12874.7	2.5e-07	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000002866	-	4259	-	ENSSDUP00000002793	666 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000002174's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000002174's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000002174	-	71	41.803	ENSSDUG00000005401	-	87	42.963
ENSSDUG00000002174	-	77	37.662	ENSSDUG00000009534	-	67	37.662
ENSSDUG00000002174	-	66	38.346	ENSSDUG00000001637	scrt2	51	38.346
ENSSDUG00000002174	-	66	45.122	ENSSDUG00000008682	-	85	45.122
ENSSDUG00000002174	-	69	45.122	ENSSDUG00000008943	-	89	45.122
ENSSDUG00000002174	-	83	35.915	ENSSDUG00000000695	-	96	35.915
ENSSDUG00000002174	-	69	36.885	ENSSDUG00000002488	-	71	34.709
ENSSDUG00000002174	-	69	36.318	ENSSDUG00000010305	-	73	36.318
ENSSDUG00000002174	-	67	43.066	ENSSDUG00000009563	-	66	43.066
ENSSDUG00000002174	-	69	32.843	ENSSDUG00000000705	-	92	32.203
ENSSDUG00000002174	-	73	32.500	ENSSDUG00000002675	znf646	87	32.500
ENSSDUG00000002174	-	76	43.478	ENSSDUG00000020805	-	97	43.478
ENSSDUG00000002174	-	71	46.053	ENSSDUG00000013904	-	64	46.053
ENSSDUG00000002174	-	68	42.029	ENSSDUG00000011604	gfi1b	51	42.029
ENSSDUG00000002174	-	73	40.541	ENSSDUG00000000786	-	98	44.286
ENSSDUG00000002174	-	80	45.455	ENSSDUG00000009553	-	74	45.455
ENSSDUG00000002174	-	80	36.383	ENSSDUG00000007336	-	93	36.213
ENSSDUG00000002174	-	73	44.000	ENSSDUG00000022914	-	60	47.674
ENSSDUG00000002174	-	72	35.948	ENSSDUG00000006740	-	84	35.948
ENSSDUG00000002174	-	79	31.982	ENSSDUG00000019932	ZNF319	86	32.207
ENSSDUG00000002174	-	71	48.235	ENSSDUG00000000946	-	95	48.235
ENSSDUG00000002174	-	70	33.619	ENSSDUG00000006463	-	95	37.500
ENSSDUG00000002174	-	73	39.850	ENSSDUG00000007752	scrt1b	70	39.850
ENSSDUG00000002174	-	77	45.185	ENSSDUG00000012926	-	63	45.185
ENSSDUG00000002174	-	68	32.773	ENSSDUG00000013335	-	90	32.773
ENSSDUG00000002174	-	83	44.643	ENSSDUG00000020788	-	89	46.296
ENSSDUG00000002174	-	85	44.785	ENSSDUG00000020783	-	70	44.785
ENSSDUG00000002174	-	67	47.967	ENSSDUG00000015254	-	83	47.967
ENSSDUG00000002174	-	61	34.328	ENSSDUG00000018060	snai2	55	34.328
ENSSDUG00000002174	-	68	44.444	ENSSDUG00000004650	-	97	46.753
ENSSDUG00000002174	-	67	53.077	ENSSDUG00000009439	-	97	46.386
ENSSDUG00000002174	-	79	40.157	ENSSDUG00000009601	-	98	42.373
ENSSDUG00000002174	-	73	38.261	ENSSDUG00000000871	-	99	38.261
ENSSDUG00000002174	-	79	34.500	ENSSDUG00000016734	-	66	33.584
ENSSDUG00000002174	-	69	42.211	ENSSDUG00000015622	-	82	43.066
ENSSDUG00000002174	-	74	40.597	ENSSDUG00000015191	-	98	40.597
ENSSDUG00000002174	-	68	36.937	ENSSDUG00000014574	znf526	64	36.937
ENSSDUG00000002174	-	99	46.809	ENSSDUG00000015013	-	99	46.809
ENSSDUG00000002174	-	66	42.442	ENSSDUG00000009577	-	67	42.690
ENSSDUG00000002174	-	77	31.157	ENSSDUG00000003003	znf319b	85	31.086
ENSSDUG00000002174	-	67	44.643	ENSSDUG00000015204	-	92	44.643
ENSSDUG00000002174	-	67	45.455	ENSSDUG00000001263	-	99	45.455
ENSSDUG00000002174	-	69	45.570	ENSSDUG00000019911	-	57	45.570
ENSSDUG00000002174	-	79	40.000	ENSSDUG00000011170	znf236	59	39.640
ENSSDUG00000002174	-	66	50.617	ENSSDUG00000002195	-	99	42.268
ENSSDUG00000002174	-	68	34.104	ENSSDUG00000022412	znf648	58	34.492
ENSSDUG00000002174	-	80	42.075	ENSSDUG00000020810	-	85	42.075
ENSSDUG00000002174	-	77	42.353	ENSSDUG00000020595	-	95	42.353
ENSSDUG00000002174	-	67	32.653	ENSSDUG00000009223	zbtb41	59	33.333
ENSSDUG00000002174	-	69	39.416	ENSSDUG00000013215	-	51	39.416
ENSSDUG00000002174	-	73	44.311	ENSSDUG00000006808	-	83	44.311
ENSSDUG00000002174	-	67	39.600	ENSSDUG00000004835	-	71	37.931
ENSSDUG00000002174	-	71	39.608	ENSSDUG00000023764	-	97	39.608
ENSSDUG00000002174	-	67	41.844	ENSSDUG00000023765	-	86	41.844
ENSSDUG00000002174	-	70	48.529	ENSSDUG00000008329	-	91	48.529
ENSSDUG00000002174	-	70	39.496	ENSSDUG00000005323	-	91	39.496
ENSSDUG00000002174	-	74	48.214	ENSSDUG00000000748	sall1b	62	48.214
ENSSDUG00000002174	-	80	46.078	ENSSDUG00000020774	-	76	45.098
ENSSDUG00000002174	-	82	35.329	ENSSDUG00000001918	znf366	54	35.329
ENSSDUG00000002174	-	80	33.555	ENSSDUG00000016450	-	66	31.395
ENSSDUG00000002174	-	73	33.069	ENSSDUG00000020397	prdm5	73	37.687
ENSSDUG00000002174	-	66	42.675	ENSSDUG00000011244	-	77	42.675
ENSSDUG00000002174	-	73	43.678	ENSSDUG00000006426	-	98	46.497
ENSSDUG00000002174	-	81	45.783	ENSSDUG00000009425	-	72	45.783
ENSSDUG00000002174	-	71	38.136	ENSSDUG00000009421	-	83	38.136
ENSSDUG00000002174	-	79	38.438	ENSSDUG00000004089	-	96	41.509
ENSSDUG00000002174	-	77	46.377	ENSSDUG00000015182	-	76	46.377
ENSSDUG00000002174	-	65	53.125	ENSSDUG00000004867	-	99	53.125
ENSSDUG00000002174	-	68	37.162	ENSSDUG00000000799	-	78	33.333
ENSSDUG00000002174	-	65	38.235	ENSSDUG00000017250	-	93	39.726
ENSSDUG00000002174	-	67	34.637	ENSSDUG00000000889	-	75	34.637
ENSSDUG00000002174	-	71	40.678	ENSSDUG00000015159	-	85	40.828
ENSSDUG00000002174	-	79	39.966	ENSSDUG00000004892	-	97	46.711
ENSSDUG00000002174	-	76	52.500	ENSSDUG00000000838	-	62	52.500

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000002174	-	76	35.500	ENSAPEG00000021575	-	65	36.889	Amphiprion_percula
ENSSDUG00000002174	-	100	67.627	ENSACLG00000017925	-	99	68.444	Astatotilapia_calliptera
ENSSDUG00000002174	-	72	42.857	ENSAMXG00000041609	-	94	42.857	Astyanax_mexicanus
ENSSDUG00000002174	-	68	44.286	ENSAMXG00000037709	-	85	44.286	Astyanax_mexicanus
ENSSDUG00000002174	-	67	38.710	ENSCSAVG00000007918	-	100	38.642	Ciona_savignyi
ENSSDUG00000002174	-	100	67.764	ENSHBUG00000002307	-	99	68.044	Haplochromis_burtoni
ENSSDUG00000002174	-	76	37.752	ENSHBUG00000012007	-	83	38.279	Haplochromis_burtoni
ENSSDUG00000002174	-	100	67.764	ENSMZEG00005024424	-	99	68.593	Maylandia_zebra
ENSSDUG00000002174	-	76	36.139	ENSOANG00000005971	-	73	36.139	Ornithorhynchus_anatinus
ENSSDUG00000002174	-	71	35.256	ENSPMEG00000014701	-	87	42.945	Poecilia_mexicana
ENSSDUG00000002174	-	100	99.249	ENSSLDG00000002776	-	100	99.249	Seriola_lalandi_dorsalis
ENSSDUG00000002174	-	75	43.902	ENSSLDG00000010390	-	97	43.902	Seriola_lalandi_dorsalis
ENSSDUG00000002174	-	76	35.093	ENSSPAG00000008958	-	92	38.170	Stegastes_partitus
ENSSDUG00000002174	-	67	41.279	ENSTGUG00000015090	-	100	41.279	Taeniopygia_guttata