EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000002366 (Gene tree)
Gene ID: 111227265
Gene Symbol: tnrc6c1
Alias: fj17e06|si:dkey-54k13.1|unm_sa1472|wu:fj17e06
Full Name: trinucleotide repeat-containing gene 6C protein-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 11852 bases
Position: chrBDQW01000169.1:986099-997950
Accession: 111227265
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000003182	RRM_1	PF00076.22	0.00018	1	1
ENSSDUP00000003131	RRM_1	PF00076.22	0.00018	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000003256	-	4968	-	ENSSDUP00000003182	1655 (aa)	-	-
ENSSDUT00000003204	-	5133	XM_022752700	ENSSDUP00000003131	1709 (aa)	XP_022608421	-

Gene Model

Click here to download ENSSDUG00000002366's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000002366's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000002366	tnrc6c1	93	57.679	ENSSDUG00000020741	tnrc6c2	100	58.569

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000002366	tnrc6c1	99	49.605	ENSG00000078687	TNRC6C	100	56.897	Homo_sapiens
ENSSDUG00000002366	tnrc6c1	98	90.845	ENSAPOG00000019749	tnrc6c1	99	91.672	Acanthochromis_polyacanthus
ENSSDUG00000002366	tnrc6c1	98	48.911	ENSAMEG00000013756	TNRC6C	99	48.032	Ailuropoda_melanoleuca
ENSSDUG00000002366	tnrc6c1	99	76.083	ENSACIG00000008075	tnrc6c1	99	76.834	Amphilophus_citrinellus
ENSSDUG00000002366	tnrc6c1	98	90.260	ENSAOCG00000023968	tnrc6c1	99	91.145	Amphiprion_ocellaris
ENSSDUG00000002366	tnrc6c1	98	90.378	ENSAPEG00000009020	tnrc6c1	99	91.263	Amphiprion_percula
ENSSDUG00000002366	tnrc6c1	99	50.026	ENSAPLG00000005456	TNRC6C	95	48.339	Anas_platyrhynchos
ENSSDUG00000002366	tnrc6c1	98	50.640	ENSACAG00000016198	TNRC6C	92	49.493	Anolis_carolinensis
ENSSDUG00000002366	tnrc6c1	99	49.446	ENSANAG00000021554	TNRC6C	100	50.542	Aotus_nancymaae
ENSSDUG00000002366	tnrc6c1	100	72.439	ENSACLG00000000424	tnrc6c1	100	75.862	Astatotilapia_calliptera
ENSSDUG00000002366	tnrc6c1	94	58.800	ENSBTAG00000018658	TNRC6C	100	50.171	Bos_taurus
ENSSDUG00000002366	tnrc6c1	99	49.262	ENSCJAG00000019431	TNRC6C	100	50.429	Callithrix_jacchus
ENSSDUG00000002366	tnrc6c1	94	56.760	ENSCAFG00000005224	TNRC6C	99	58.763	Canis_familiaris
ENSSDUG00000002366	tnrc6c1	99	50.781	ENSCAFG00020006661	TNRC6C	100	50.285	Canis_lupus_dingo
ENSSDUG00000002366	tnrc6c1	99	49.568	ENSCHIG00000026004	TNRC6C	94	51.437	Capra_hircus
ENSSDUG00000002366	tnrc6c1	90	51.617	ENSTSYG00000005403	TNRC6C	94	50.567	Carlito_syrichta
ENSSDUG00000002366	tnrc6c1	98	47.212	ENSCAPG00000007307	TNRC6C	93	46.877	Cavia_aperea
ENSSDUG00000002366	tnrc6c1	98	50.462	ENSCPOG00000000467	TNRC6C	99	50.471	Cavia_porcellus
ENSSDUG00000002366	tnrc6c1	99	50.376	ENSCCAG00000030524	TNRC6C	100	50.514	Cebus_capucinus
ENSSDUG00000002366	tnrc6c1	99	49.552	ENSCATG00000033135	TNRC6C	100	50.828	Cercocebus_atys
ENSSDUG00000002366	tnrc6c1	98	51.063	ENSCLAG00000011139	TNRC6C	93	50.383	Chinchilla_lanigera
ENSSDUG00000002366	tnrc6c1	99	49.735	ENSCSAG00000005167	TNRC6C	93	48.726	Chlorocebus_sabaeus
ENSSDUG00000002366	tnrc6c1	62	64.055	ENSCHOG00000000088	TNRC6C	66	63.889	Choloepus_hoffmanni
ENSSDUG00000002366	tnrc6c1	98	51.495	ENSCPBG00000027960	TNRC6C	99	50.514	Chrysemys_picta_bellii
ENSSDUG00000002366	tnrc6c1	99	49.736	ENSCANG00000041771	TNRC6C	100	51.087	Colobus_angolensis_palliatus
ENSSDUG00000002366	tnrc6c1	98	50.108	ENSCGRG00001022686	Tnrc6c	94	50.182	Cricetulus_griseus_chok1gshd
ENSSDUG00000002366	tnrc6c1	98	50.382	ENSCGRG00000018041	Tnrc6c	94	50.182	Cricetulus_griseus_crigri
ENSSDUG00000002366	tnrc6c1	99	83.991	ENSCSEG00000012744	tnrc6c1	96	83.873	Cynoglossus_semilaevis
ENSSDUG00000002366	tnrc6c1	92	74.344	ENSDARG00000076847	tnrc6c1	99	61.251	Danio_rerio
ENSSDUG00000002366	tnrc6c1	98	49.811	ENSDNOG00000003247	TNRC6C	95	48.831	Dasypus_novemcinctus
ENSSDUG00000002366	tnrc6c1	99	47.686	ENSDORG00000004558	Tnrc6c	94	49.272	Dipodomys_ordii
ENSSDUG00000002366	tnrc6c1	88	55.865	ENSETEG00000005527	TNRC6C	86	55.378	Echinops_telfairi
ENSSDUG00000002366	tnrc6c1	91	52.148	ENSEASG00005004799	TNRC6C	100	50.658	Equus_asinus_asinus
ENSSDUG00000002366	tnrc6c1	99	50.325	ENSECAG00000012486	TNRC6C	94	49.648	Equus_caballus
ENSSDUG00000002366	tnrc6c1	92	57.904	ENSEEUG00000010008	TNRC6C	92	58.013	Erinaceus_europaeus
ENSSDUG00000002366	tnrc6c1	99	48.733	ENSFCAG00000028358	TNRC6C	100	50.458	Felis_catus
ENSSDUG00000002366	tnrc6c1	90	50.564	ENSFALG00000000848	TNRC6C	94	49.709	Ficedula_albicollis
ENSSDUG00000002366	tnrc6c1	96	51.722	ENSFDAG00000010368	TNRC6C	99	50.527	Fukomys_damarensis
ENSSDUG00000002366	tnrc6c1	98	84.369	ENSFHEG00000002936	tnrc6c1	99	82.619	Fundulus_heteroclitus
ENSSDUG00000002366	tnrc6c1	99	50.397	ENSGALG00000001725	TNRC6C	97	52.243	Gallus_gallus
ENSSDUG00000002366	tnrc6c1	98	84.624	ENSGAFG00000019019	tnrc6c1	100	84.644	Gambusia_affinis
ENSSDUG00000002366	tnrc6c1	99	79.203	ENSGACG00000012320	tnrc6c1	92	78.878	Gasterosteus_aculeatus
ENSSDUG00000002366	tnrc6c1	98	52.524	ENSGAGG00000022043	TNRC6C	99	51.104	Gopherus_agassizii
ENSSDUG00000002366	tnrc6c1	99	49.499	ENSGGOG00000011304	TNRC6C	100	50.428	Gorilla_gorilla
ENSSDUG00000002366	tnrc6c1	99	84.207	ENSHBUG00000010846	tnrc6c1	100	84.611	Haplochromis_burtoni
ENSSDUG00000002366	tnrc6c1	99	50.864	ENSHGLG00000004809	TNRC6C	71	55.160	Heterocephalus_glaber_female
ENSSDUG00000002366	tnrc6c1	99	50.456	ENSHGLG00100012597	TNRC6C	71	54.795	Heterocephalus_glaber_male
ENSSDUG00000002366	tnrc6c1	99	62.556	ENSIPUG00000000818	tnrc6c1	95	62.003	Ictalurus_punctatus
ENSSDUG00000002366	tnrc6c1	98	50.622	ENSSTOG00000009101	TNRC6C	99	50.250	Ictidomys_tridecemlineatus
ENSSDUG00000002366	tnrc6c1	99	49.327	ENSJJAG00000017055	Tnrc6c	93	48.592	Jaculus_jaculus
ENSSDUG00000002366	tnrc6c1	97	78.929	ENSKMAG00000021023	tnrc6c1	100	80.543	Kryptolebias_marmoratus
ENSSDUG00000002366	tnrc6c1	96	48.425	ENSLACG00000015283	TNRC6C	99	47.179	Latimeria_chalumnae
ENSSDUG00000002366	tnrc6c1	99	76.934	ENSLOCG00000013377	tnrc6c1	89	76.496	Lepisosteus_oculatus
ENSSDUG00000002366	tnrc6c1	99	50.081	ENSLAFG00000011122	TNRC6C	98	62.971	Loxodonta_africana
ENSSDUG00000002366	tnrc6c1	99	49.552	ENSMFAG00000043943	TNRC6C	100	50.828	Macaca_fascicularis
ENSSDUG00000002366	tnrc6c1	99	49.841	ENSMMUG00000011924	TNRC6C	100	50.828	Macaca_mulatta
ENSSDUG00000002366	tnrc6c1	99	49.500	ENSMNEG00000030405	TNRC6C	100	50.771	Macaca_nemestrina
ENSSDUG00000002366	tnrc6c1	99	49.552	ENSMLEG00000033436	TNRC6C	100	50.828	Mandrillus_leucophaeus
ENSSDUG00000002366	tnrc6c1	98	89.527	ENSMAMG00000023613	tnrc6c1	99	89.586	Mastacembelus_armatus
ENSSDUG00000002366	tnrc6c1	99	84.072	ENSMZEG00005010920	tnrc6c1	99	82.920	Maylandia_zebra
ENSSDUG00000002366	tnrc6c1	93	68.345	ENSMGAG00000003906	TNRC6C	88	66.058	Meleagris_gallopavo
ENSSDUG00000002366	tnrc6c1	90	51.789	ENSMAUG00000021618	Tnrc6c	94	51.122	Mesocricetus_auratus
ENSSDUG00000002366	tnrc6c1	99	49.102	ENSMICG00000003952	TNRC6C	100	50.715	Microcebus_murinus
ENSSDUG00000002366	tnrc6c1	98	50.054	ENSMOCG00000015879	Tnrc6c	99	50.028	Microtus_ochrogaster
ENSSDUG00000002366	tnrc6c1	93	86.299	ENSMMOG00000005203	tnrc6c1	100	86.423	Mola_mola
ENSSDUG00000002366	tnrc6c1	98	51.053	ENSMODG00000001785	TNRC6C	93	49.675	Monodelphis_domestica
ENSSDUG00000002366	tnrc6c1	98	49.946	MGP_CAROLIEiJ_G0017465	Tnrc6c	99	49.584	Mus_caroli
ENSSDUG00000002366	tnrc6c1	98	49.946	ENSMUSG00000025571	Tnrc6c	99	49.585	Mus_musculus
ENSSDUG00000002366	tnrc6c1	98	50.163	MGP_PahariEiJ_G0018593	Tnrc6c	99	49.806	Mus_pahari
ENSSDUG00000002366	tnrc6c1	98	49.784	MGP_SPRETEiJ_G0018309	Tnrc6c	99	49.419	Mus_spretus
ENSSDUG00000002366	tnrc6c1	99	49.126	ENSMPUG00000013348	TNRC6C	92	48.461	Mustela_putorius_furo
ENSSDUG00000002366	tnrc6c1	98	48.585	ENSMLUG00000014431	TNRC6C	91	48.077	Myotis_lucifugus
ENSSDUG00000002366	tnrc6c1	99	50.000	ENSNGAG00000012203	Tnrc6c	93	48.777	Nannospalax_galili
ENSSDUG00000002366	tnrc6c1	98	85.192	ENSNBRG00000005344	tnrc6c1	99	85.495	Neolamprologus_brichardi
ENSSDUG00000002366	tnrc6c1	99	48.038	ENSNLEG00000000047	TNRC6C	93	46.887	Nomascus_leucogenys
ENSSDUG00000002366	tnrc6c1	92	66.898	ENSMEUG00000005104	TNRC6C	54	66.146	Notamacropus_eugenii
ENSSDUG00000002366	tnrc6c1	93	52.030	ENSODEG00000012499	TNRC6C	100	51.029	Octodon_degus
ENSSDUG00000002366	tnrc6c1	93	86.009	ENSONIG00000002210	tnrc6c1	100	85.884	Oreochromis_niloticus
ENSSDUG00000002366	tnrc6c1	73	54.814	ENSOANG00000009758	-	67	54.839	Ornithorhynchus_anatinus
ENSSDUG00000002366	tnrc6c1	98	79.859	ENSORLG00000009837	tnrc6c1	100	87.179	Oryzias_latipes
ENSSDUG00000002366	tnrc6c1	98	77.925	ENSORLG00020016510	tnrc6c1	100	79.042	Oryzias_latipes_hni
ENSSDUG00000002366	tnrc6c1	79	76.484	ENSORLG00015000171	tnrc6c1	98	76.331	Oryzias_latipes_hsok
ENSSDUG00000002366	tnrc6c1	98	81.095	ENSOMEG00000000357	tnrc6c1	99	81.272	Oryzias_melastigma
ENSSDUG00000002366	tnrc6c1	90	49.740	ENSOGAG00000007197	TNRC6C	94	49.552	Otolemur_garnettii
ENSSDUG00000002366	tnrc6c1	95	47.128	ENSOARG00000006041	TNRC6C	93	46.885	Ovis_aries
ENSSDUG00000002366	tnrc6c1	99	49.578	ENSPPAG00000027160	TNRC6C	100	50.599	Pan_paniscus
ENSSDUG00000002366	tnrc6c1	99	48.733	ENSPPRG00000018881	TNRC6C	99	50.604	Panthera_pardus
ENSSDUG00000002366	tnrc6c1	87	56.893	ENSPTIG00000008791	TNRC6C	78	55.128	Panthera_tigris_altaica
ENSSDUG00000002366	tnrc6c1	99	49.631	ENSPTRG00000009699	TNRC6C	100	50.656	Pan_troglodytes
ENSSDUG00000002366	tnrc6c1	99	49.552	ENSPANG00000019994	TNRC6C	100	50.828	Papio_anubis
ENSSDUG00000002366	tnrc6c1	93	57.867	ENSPKIG00000005428	tnrc6c1	100	58.186	Paramormyrops_kingsleyae
ENSSDUG00000002366	tnrc6c1	96	51.411	ENSPSIG00000018069	TNRC6C	99	50.501	Pelodiscus_sinensis
ENSSDUG00000002366	tnrc6c1	93	71.795	ENSPMGG00000022911	tnrc6c1	98	80.816	Periophthalmus_magnuspinnatus
ENSSDUG00000002366	tnrc6c1	98	50.703	ENSPEMG00000009785	Tnrc6c	94	48.727	Peromyscus_maniculatus_bairdii
ENSSDUG00000002366	tnrc6c1	50	39.802	ENSPCIG00000017421	-	89	40.178	Phascolarctos_cinereus
ENSSDUG00000002366	tnrc6c1	98	84.820	ENSPFOG00000012560	tnrc6c1	92	84.269	Poecilia_formosa
ENSSDUG00000002366	tnrc6c1	93	84.726	ENSPLAG00000021055	tnrc6c1	100	84.788	Poecilia_latipinna
ENSSDUG00000002366	tnrc6c1	99	50.000	ENSPPYG00000008679	TNRC6C	92	48.727	Pongo_abelii
ENSSDUG00000002366	tnrc6c1	67	67.489	ENSPCAG00000012510	TNRC6C	89	67.117	Procavia_capensis
ENSSDUG00000002366	tnrc6c1	93	51.484	ENSPCOG00000021451	TNRC6C	94	51.648	Propithecus_coquereli
ENSSDUG00000002366	tnrc6c1	92	61.719	ENSPVAG00000002008	TNRC6C	95	61.538	Pteropus_vampyrus
ENSSDUG00000002366	tnrc6c1	98	83.016	ENSPNYG00000014477	tnrc6c1	100	84.276	Pundamilia_nyererei
ENSSDUG00000002366	tnrc6c1	91	51.296	ENSRNOG00000022395	Tnrc6c	94	51.065	Rattus_norvegicus
ENSSDUG00000002366	tnrc6c1	99	49.605	ENSRBIG00000027777	TNRC6C	100	50.885	Rhinopithecus_bieti
ENSSDUG00000002366	tnrc6c1	99	49.605	ENSRROG00000042912	TNRC6C	100	50.885	Rhinopithecus_roxellana
ENSSDUG00000002366	tnrc6c1	99	49.735	ENSSBOG00000023981	TNRC6C	100	49.218	Saimiri_boliviensis_boliviensis
ENSSDUG00000002366	tnrc6c1	52	63.025	ENSSHAG00000018330	-	100	62.500	Sarcophilus_harrisii
ENSSDUG00000002366	tnrc6c1	99	60.714	ENSSFOG00015006475	tnrc6c1	97	60.730	Scleropages_formosus
ENSSDUG00000002366	tnrc6c1	96	63.065	ENSSFOG00015004735	-	99	66.837	Scleropages_formosus
ENSSDUG00000002366	tnrc6c1	98	89.586	ENSSMAG00000012761	tnrc6c1	100	89.750	Scophthalmus_maximus
ENSSDUG00000002366	tnrc6c1	93	99.686	ENSSLDG00000025613	tnrc6c1	100	99.686	Seriola_lalandi_dorsalis
ENSSDUG00000002366	tnrc6c1	65	62.551	ENSSARG00000006816	TNRC6C	91	62.551	Sorex_araneus
ENSSDUG00000002366	tnrc6c1	80	54.448	ENSSPUG00000007341	TNRC6C	88	54.300	Sphenodon_punctatus
ENSSDUG00000002366	tnrc6c1	98	89.829	ENSSPAG00000014977	tnrc6c1	98	90.882	Stegastes_partitus
ENSSDUG00000002366	tnrc6c1	86	59.320	ENSSSCG00000034373	TNRC6C	96	55.556	Sus_scrofa
ENSSDUG00000002366	tnrc6c1	96	51.488	ENSTGUG00000007733	TNRC6C	99	50.414	Taeniopygia_guttata
ENSSDUG00000002366	tnrc6c1	98	81.457	ENSTRUG00000011685	tnrc6c1	98	81.280	Takifugu_rubripes
ENSSDUG00000002366	tnrc6c1	98	75.770	ENSTNIG00000005273	tnrc6c1	100	76.285	Tetraodon_nigroviridis
ENSSDUG00000002366	tnrc6c1	64	51.436	ENSTBEG00000005046	TNRC6C	100	50.593	Tupaia_belangeri
ENSSDUG00000002366	tnrc6c1	96	51.019	ENSTTRG00000010828	TNRC6C	99	50.083	Tursiops_truncatus
ENSSDUG00000002366	tnrc6c1	99	49.161	ENSUMAG00000013614	TNRC6C	94	48.698	Ursus_maritimus
ENSSDUG00000002366	tnrc6c1	51	52.974	ENSVPAG00000006765	-	96	53.811	Vicugna_pacos
ENSSDUG00000002366	tnrc6c1	91	52.817	ENSVVUG00000015268	TNRC6C	100	51.027	Vulpes_vulpes
ENSSDUG00000002366	tnrc6c1	91	51.865	ENSXETG00000019470	tnrc6c	97	50.412	Xenopus_tropicalis
ENSSDUG00000002366	tnrc6c1	98	84.506	ENSXMAG00000025971	tnrc6c1	100	84.519	Xiphophorus_maculatus