EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000002394 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 1601 bases
Position: chrBDQW01000331.1:5900873-5902473
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000003158	RRM_1	PF00076.22	3.8e-33	1	2
ENSSDUP00000003158	RRM_1	PF00076.22	3.8e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000003232	-	573	-	ENSSDUP00000003158	190 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000002394's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000002394's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000002394	-	95	40.449	ENSSDUG00000009050	-	52	39.130
ENSSDUG00000002394	-	86	37.975	ENSSDUG00000022697	-	51	34.868
ENSSDUG00000002394	-	86	74.691	ENSSDUG00000002431	-	87	74.691
ENSSDUG00000002394	-	83	34.568	ENSSDUG00000021883	slirp	56	34.568
ENSSDUG00000002394	-	89	54.545	ENSSDUG00000013908	hnrnpa1a	82	55.215
ENSSDUG00000002394	-	87	52.500	ENSSDUG00000000381	hnrnpa3	56	52.500
ENSSDUG00000002394	-	89	36.943	ENSSDUG00000014507	msi2a	76	37.500
ENSSDUG00000002394	-	96	34.426	ENSSDUG00000004787	hnrnpaba	54	36.875
ENSSDUG00000002394	-	95	38.202	ENSSDUG00000010792	hnrnpd	52	38.202
ENSSDUG00000002394	-	85	30.435	ENSSDUG00000006852	tardbpl	51	30.435
ENSSDUG00000002394	-	86	37.500	ENSSDUG00000021968	-	86	37.500

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000002394	-	87	98.193	ENSAOCG00000015914	-	63	98.193	Amphiprion_ocellaris
ENSSDUG00000002394	-	87	73.913	ENSAOCG00000015951	-	96	73.913	Amphiprion_ocellaris
ENSSDUG00000002394	-	87	73.913	ENSAPEG00000002274	-	96	73.913	Amphiprion_percula
ENSSDUG00000002394	-	87	98.193	ENSAPEG00000002224	-	74	98.193	Amphiprion_percula
ENSSDUG00000002394	-	87	95.181	ENSACLG00000008978	-	81	95.181	Astatotilapia_calliptera
ENSSDUG00000002394	-	87	91.566	ENSCVAG00000008324	-	76	91.566	Cyprinodon_variegatus
ENSSDUG00000002394	-	81	36.424	ENSEBUG00000010003	-	79	36.424	Eptatretus_burgeri
ENSSDUG00000002394	-	87	75.152	ENSELUG00000014407	-	98	75.152	Esox_lucius
ENSSDUG00000002394	-	87	95.181	ENSHBUG00000023867	-	81	95.181	Haplochromis_burtoni
ENSSDUG00000002394	-	87	78.313	ENSHCOG00000007180	-	75	78.313	Hippocampus_comes
ENSSDUG00000002394	-	96	87.978	ENSLBEG00000006362	-	87	87.978	Labrus_bergylta
ENSSDUG00000002394	-	59	74.107	ENSLOCG00000012121	-	61	74.107	Lepisosteus_oculatus
ENSSDUG00000002394	-	87	96.386	ENSMAMG00000017728	-	67	96.386	Mastacembelus_armatus
ENSSDUG00000002394	-	87	95.181	ENSMZEG00005001063	-	80	95.181	Maylandia_zebra
ENSSDUG00000002394	-	87	72.840	ENSMMOG00000004242	-	98	72.840	Mola_mola
ENSSDUG00000002394	-	85	43.293	ENSMEUG00000003051	-	52	43.030	Notamacropus_eugenii
ENSSDUG00000002394	-	86	60.870	ENSORLG00000023176	-	59	60.870	Oryzias_latipes
ENSSDUG00000002394	-	87	59.394	ENSORLG00000030284	-	73	59.394	Oryzias_latipes
ENSSDUG00000002394	-	86	60.494	ENSORLG00000023542	-	61	60.494	Oryzias_latipes
ENSSDUG00000002394	-	87	89.759	ENSORLG00020007171	-	96	89.759	Oryzias_latipes_hni
ENSSDUG00000002394	-	89	57.895	ENSORLG00020007084	-	79	57.895	Oryzias_latipes_hni
ENSSDUG00000002394	-	86	60.377	ENSORLG00020006029	-	60	60.377	Oryzias_latipes_hni
ENSSDUG00000002394	-	87	54.167	ENSOMEG00000006903	-	73	54.167	Oryzias_melastigma
ENSSDUG00000002394	-	94	54.167	ENSOMEG00000023475	-	80	54.167	Oryzias_melastigma
ENSSDUG00000002394	-	84	45.062	ENSOMEG00000006327	-	64	45.062	Oryzias_melastigma
ENSSDUG00000002394	-	87	53.571	ENSOMEG00000021030	-	68	53.571	Oryzias_melastigma
ENSSDUG00000002394	-	84	58.571	ENSOMEG00000002084	-	70	58.571	Oryzias_melastigma
ENSSDUG00000002394	-	98	49.735	ENSOMEG00000009566	-	95	49.735	Oryzias_melastigma
ENSSDUG00000002394	-	87	57.292	ENSOMEG00000002000	-	69	57.292	Oryzias_melastigma
ENSSDUG00000002394	-	87	54.762	ENSOMEG00000002509	-	88	53.571	Oryzias_melastigma
ENSSDUG00000002394	-	87	54.167	ENSOMEG00000012368	-	67	54.167	Oryzias_melastigma
ENSSDUG00000002394	-	87	91.566	ENSPREG00000010603	-	59	91.566	Poecilia_reticulata
ENSSDUG00000002394	-	87	95.181	ENSPNYG00000020763	-	81	95.181	Pundamilia_nyererei
ENSSDUG00000002394	-	85	72.050	ENSPNAG00000018051	-	80	72.050	Pygocentrus_nattereri
ENSSDUG00000002394	-	86	62.195	ENSSHAG00000015609	-	81	62.195	Sarcophilus_harrisii
ENSSDUG00000002394	-	86	75.000	ENSSLDG00000024685	-	86	75.000	Seriola_lalandi_dorsalis