EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000002397 (Gene tree)
Gene ID: 111216883
Gene Symbol: ercc2
Alias: XPD|zgc:56365
Full Name: ERCC excision repair 2%2C TFIIH core complex helicase subunit
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 15434 bases
Position: chrBDQW01000036.1:1280884-1296317
Accession: 111216883
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000003237	ResIII	PF04851.15	4.2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000003311	-	1998	-	ENSSDUP00000003237	665 (aa)	-	-
ENSSDUT00000003279	-	2483	XM_022738526	ENSSDUP00000003205	760 (aa)	XP_022594247	UPI000BBF1853

Gene Model

Click here to download ENSSDUG00000002397's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03022	Basal transcription factors	KEGG
sdu03420	Nucleotide excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000002397's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000002397	ercc2	99	83.654	ENSG00000104884	ERCC2	97	83.584	Homo_sapiens
ENSSDUG00000002397	ercc2	99	97.289	ENSAPOG00000000375	ercc2	100	97.289	Acanthochromis_polyacanthus
ENSSDUG00000002397	ercc2	100	96.992	ENSACIG00000008002	ercc2	98	96.992	Amphilophus_citrinellus
ENSSDUG00000002397	ercc2	100	95.352	ENSAOCG00000016153	ercc2	100	95.352	Amphiprion_ocellaris
ENSSDUG00000002397	ercc2	100	95.502	ENSAPEG00000016712	ercc2	100	95.502	Amphiprion_percula
ENSSDUG00000002397	ercc2	100	97.594	ENSATEG00000005268	ercc2	98	97.594	Anabas_testudineus
ENSSDUG00000002397	ercc2	99	83.434	ENSANAG00000022694	ERCC2	97	83.434	Aotus_nancymaae
ENSSDUG00000002397	ercc2	99	97.139	ENSACLG00000017573	ercc2	100	97.139	Astatotilapia_calliptera
ENSSDUG00000002397	ercc2	99	93.825	ENSAMXG00000009052	ercc2	99	93.825	Astyanax_mexicanus
ENSSDUG00000002397	ercc2	99	83.735	ENSCJAG00000012716	ERCC2	97	83.735	Callithrix_jacchus
ENSSDUG00000002397	ercc2	99	84.187	ENSCAFG00020011390	ERCC2	98	84.187	Canis_lupus_dingo
ENSSDUG00000002397	ercc2	99	69.138	ENSTSYG00000026723	ERCC2	98	69.138	Carlito_syrichta
ENSSDUG00000002397	ercc2	99	81.614	ENSCCAG00000019831	ERCC2	97	81.614	Cebus_capucinus
ENSSDUG00000002397	ercc2	99	83.735	ENSCANG00000040683	ERCC2	97	83.735	Colobus_angolensis_palliatus
ENSSDUG00000002397	ercc2	100	91.729	ENSCSEG00000006041	ercc2	100	91.729	Cynoglossus_semilaevis
ENSSDUG00000002397	ercc2	99	81.476	ENSEASG00005013856	ERCC2	97	81.476	Equus_asinus_asinus
ENSSDUG00000002397	ercc2	99	92.771	ENSELUG00000018055	ercc2	99	92.771	Esox_lucius
ENSSDUG00000002397	ercc2	99	84.187	ENSFCAG00000002679	ERCC2	97	84.187	Felis_catus
ENSSDUG00000002397	ercc2	100	96.090	ENSFHEG00000000072	ercc2	98	96.090	Fundulus_heteroclitus
ENSSDUG00000002397	ercc2	99	84.068	ENSGAGG00000009493	ERCC2	98	84.068	Gopherus_agassizii
ENSSDUG00000002397	ercc2	99	83.735	ENSGGOG00000015842	ERCC2	97	83.735	Gorilla_gorilla
ENSSDUG00000002397	ercc2	100	96.257	ENSHBUG00000002187	ercc2	100	96.257	Haplochromis_burtoni
ENSSDUG00000002397	ercc2	100	96.090	ENSLBEG00000010573	ercc2	90	96.090	Labrus_bergylta
ENSSDUG00000002397	ercc2	99	83.735	ENSMFAG00000037898	ERCC2	97	83.735	Macaca_fascicularis
ENSSDUG00000002397	ercc2	99	83.735	ENSMMUG00000014419	ERCC2	97	83.735	Macaca_mulatta
ENSSDUG00000002397	ercc2	99	83.735	ENSMNEG00000042641	ERCC2	97	83.735	Macaca_nemestrina
ENSSDUG00000002397	ercc2	99	83.710	ENSMLEG00000043492	ERCC2	97	83.710	Mandrillus_leucophaeus
ENSSDUG00000002397	ercc2	100	96.992	ENSMAMG00000016724	ercc2	98	96.992	Mastacembelus_armatus
ENSSDUG00000002397	ercc2	100	97.143	ENSMZEG00005024441	ercc2	100	97.143	Maylandia_zebra
ENSSDUG00000002397	ercc2	99	83.434	ENSMICG00000000635	ERCC2	97	83.434	Microcebus_murinus
ENSSDUG00000002397	ercc2	100	92.030	ENSMMOG00000005162	ercc2	98	92.030	Mola_mola
ENSSDUG00000002397	ercc2	100	96.090	ENSMALG00000005990	ercc2	98	96.090	Monopterus_albus
ENSSDUG00000002397	ercc2	99	84.488	MGP_CAROLIEiJ_G0029287	Ercc2	97	84.488	Mus_caroli
ENSSDUG00000002397	ercc2	99	84.488	ENSMUSG00000030400	Ercc2	97	84.488	Mus_musculus
ENSSDUG00000002397	ercc2	99	84.488	MGP_PahariEiJ_G0021147	Ercc2	97	84.488	Mus_pahari
ENSSDUG00000002397	ercc2	99	84.337	MGP_SPRETEiJ_G0030371	Ercc2	97	84.337	Mus_spretus
ENSSDUG00000002397	ercc2	99	83.735	ENSPPAG00000044005	ERCC2	97	83.735	Pan_paniscus
ENSSDUG00000002397	ercc2	99	79.970	ENSPPRG00000000507	ERCC2	97	80.120	Panthera_pardus
ENSSDUG00000002397	ercc2	99	83.735	ENSPTRG00000011149	ERCC2	97	83.735	Pan_troglodytes
ENSSDUG00000002397	ercc2	99	83.710	ENSPANG00000032195	ERCC2	97	83.710	Papio_anubis
ENSSDUG00000002397	ercc2	99	89.307	ENSPKIG00000006883	ercc2	96	89.307	Paramormyrops_kingsleyae
ENSSDUG00000002397	ercc2	99	94.578	ENSPMGG00000000223	ercc2	99	94.578	Periophthalmus_magnuspinnatus
ENSSDUG00000002397	ercc2	100	96.241	ENSPLAG00000002626	ercc2	98	96.241	Poecilia_latipinna
ENSSDUG00000002397	ercc2	100	96.241	ENSPMEG00000002858	ercc2	98	96.241	Poecilia_mexicana
ENSSDUG00000002397	ercc2	100	91.429	ENSPREG00000019280	ercc2	97	91.429	Poecilia_reticulata
ENSSDUG00000002397	ercc2	99	96.402	ENSPNYG00000022007	ercc2	100	96.402	Pundamilia_nyererei
ENSSDUG00000002397	ercc2	99	93.373	ENSPNAG00000010434	ercc2	99	93.373	Pygocentrus_nattereri
ENSSDUG00000002397	ercc2	99	83.735	ENSRROG00000040423	ERCC2	97	83.735	Rhinopithecus_roxellana
ENSSDUG00000002397	ercc2	99	83.584	ENSSBOG00000030257	ERCC2	98	83.584	Saimiri_boliviensis_boliviensis
ENSSDUG00000002397	ercc2	99	91.045	ENSSMAG00000019720	ercc2	100	91.045	Scophthalmus_maximus
ENSSDUG00000002397	ercc2	100	99.850	ENSSLDG00000020353	ercc2	100	99.850	Seriola_lalandi_dorsalis
ENSSDUG00000002397	ercc2	100	96.842	ENSSPAG00000002074	ercc2	98	96.842	Stegastes_partitus
ENSSDUG00000002397	ercc2	100	95.338	ENSTRUG00000007303	ercc2	98	95.338	Takifugu_rubripes
ENSSDUG00000002397	ercc2	99	84.187	ENSUAMG00000019562	ERCC2	98	84.187	Ursus_americanus
ENSSDUG00000002397	ercc2	100	91.729	ENSXMAG00000003922	ercc2	97	91.729	Xiphophorus_maculatus