EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000002699 (Gene tree)
Gene ID: 111224505
Gene Symbol: snd1
Alias: SN4TDR|TDRD11|p100L|p100S|wu:fc27g10
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 171811 bases
Position: chrBDQW01000138.1:6513433-6685243
Accession: 111224505
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000003638	TUDOR	PF00567.24	2.9e-25	1	1
ENSSDUP00000003638	SNase	PF00565.17	7.8e-66	1	4
ENSSDUP00000003638	SNase	PF00565.17	7.8e-66	2	4
ENSSDUP00000003638	SNase	PF00565.17	7.8e-66	3	4
ENSSDUP00000003638	SNase	PF00565.17	7.8e-66	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000003720	-	3925	XM_022749010	ENSSDUP00000003638	974 (aa)	XP_022604731	-

Gene Model

Click here to download ENSSDUG00000002699's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000002699's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000002699	snd1	92	84.316	ENSG00000197157	SND1	100	83.443	Homo_sapiens
ENSSDUG00000002699	snd1	94	97.475	ENSAPOG00000017599	snd1	100	97.475	Acanthochromis_polyacanthus
ENSSDUG00000002699	snd1	94	83.297	ENSAMEG00000004664	SND1	96	82.454	Ailuropoda_melanoleuca
ENSSDUG00000002699	snd1	94	93.194	ENSACIG00000003551	snd1	100	93.194	Amphilophus_citrinellus
ENSSDUG00000002699	snd1	94	97.805	ENSAOCG00000014166	snd1	100	97.805	Amphiprion_ocellaris
ENSSDUG00000002699	snd1	94	97.585	ENSAPEG00000007067	snd1	100	97.585	Amphiprion_percula
ENSSDUG00000002699	snd1	92	96.085	ENSATEG00000018475	snd1	89	96.085	Anabas_testudineus
ENSSDUG00000002699	snd1	92	84.427	ENSANAG00000034463	SND1	99	84.650	Aotus_nancymaae
ENSSDUG00000002699	snd1	94	94.951	ENSACLG00000022897	snd1	100	94.951	Astatotilapia_calliptera
ENSSDUG00000002699	snd1	93	90.330	ENSAMXG00000016318	snd1	99	90.330	Astyanax_mexicanus
ENSSDUG00000002699	snd1	92	84.650	ENSBTAG00000010692	SND1	100	83.772	Bos_taurus
ENSSDUG00000002699	snd1	93	47.154	WBGene00006626	tsn-1	99	47.476	Caenorhabditis_elegans
ENSSDUG00000002699	snd1	92	84.427	ENSCJAG00000017668	SND1	99	84.650	Callithrix_jacchus
ENSSDUG00000002699	snd1	94	83.772	ENSCAFG00000001700	SND1	100	83.772	Canis_familiaris
ENSSDUG00000002699	snd1	94	83.772	ENSCAFG00020021639	SND1	100	83.772	Canis_lupus_dingo
ENSSDUG00000002699	snd1	92	84.538	ENSCHIG00000023390	SND1	100	83.662	Capra_hircus
ENSSDUG00000002699	snd1	65	87.368	ENSTSYG00000004979	SND1	96	87.368	Carlito_syrichta
ENSSDUG00000002699	snd1	91	74.437	ENSCAPG00000010677	SND1	97	74.437	Cavia_aperea
ENSSDUG00000002699	snd1	92	84.316	ENSCPOG00000006251	SND1	100	83.443	Cavia_porcellus
ENSSDUG00000002699	snd1	92	84.427	ENSCCAG00000036847	SND1	100	83.553	Cebus_capucinus
ENSSDUG00000002699	snd1	92	84.538	ENSCATG00000035214	SND1	99	84.763	Cercocebus_atys
ENSSDUG00000002699	snd1	92	84.538	ENSCLAG00000011796	SND1	100	83.662	Chinchilla_lanigera
ENSSDUG00000002699	snd1	92	84.538	ENSCSAG00000010182	SND1	100	83.662	Chlorocebus_sabaeus
ENSSDUG00000002699	snd1	72	75.248	ENSCHOG00000002218	SND1	86	75.248	Choloepus_hoffmanni
ENSSDUG00000002699	snd1	94	83.864	ENSCPBG00000018094	SND1	100	83.864	Chrysemys_picta_bellii
ENSSDUG00000002699	snd1	92	56.589	ENSCING00000000524	-	99	56.291	Ciona_intestinalis
ENSSDUG00000002699	snd1	93	56.987	ENSCSAVG00000008807	-	99	56.987	Ciona_savignyi
ENSSDUG00000002699	snd1	92	84.538	ENSCANG00000035119	SND1	100	83.662	Colobus_angolensis_palliatus
ENSSDUG00000002699	snd1	92	84.093	ENSCGRG00001022514	Snd1	100	83.224	Cricetulus_griseus_chok1gshd
ENSSDUG00000002699	snd1	91	84.312	ENSCGRG00000012277	Snd1	99	84.312	Cricetulus_griseus_crigri
ENSSDUG00000002699	snd1	94	94.182	ENSCSEG00000008661	snd1	100	94.182	Cynoglossus_semilaevis
ENSSDUG00000002699	snd1	94	94.951	ENSCVAG00000010316	snd1	100	94.951	Cyprinodon_variegatus
ENSSDUG00000002699	snd1	94	89.485	ENSDARG00000006766	snd1	99	91.053	Danio_rerio
ENSSDUG00000002699	snd1	91	82.790	ENSDNOG00000006795	SND1	100	82.790	Dasypus_novemcinctus
ENSSDUG00000002699	snd1	92	84.316	ENSDORG00000000336	Snd1	100	83.443	Dipodomys_ordii
ENSSDUG00000002699	snd1	92	50.271	FBgn0035121	Tudor-SN	99	50.000	Drosophila_melanogaster
ENSSDUG00000002699	snd1	84	91.667	ENSETEG00000000375	SND1	92	91.667	Echinops_telfairi
ENSSDUG00000002699	snd1	56	64.921	ENSEBUG00000014201	-	84	76.630	Eptatretus_burgeri
ENSSDUG00000002699	snd1	92	83.151	ENSEASG00005008513	SND1	100	82.309	Equus_asinus_asinus
ENSSDUG00000002699	snd1	92	84.316	ENSECAG00000011451	SND1	100	83.443	Equus_caballus
ENSSDUG00000002699	snd1	94	73.904	ENSEEUG00000014737	SND1	100	73.904	Erinaceus_europaeus
ENSSDUG00000002699	snd1	94	89.387	ENSELUG00000001805	snd1	97	89.387	Esox_lucius
ENSSDUG00000002699	snd1	94	83.662	ENSFCAG00000008289	SND1	100	83.662	Felis_catus
ENSSDUG00000002699	snd1	92	84.340	ENSFDAG00000015881	SND1	100	83.224	Fukomys_damarensis
ENSSDUG00000002699	snd1	94	92.696	ENSFHEG00000004093	snd1	99	94.312	Fundulus_heteroclitus
ENSSDUG00000002699	snd1	70	82.203	ENSGMOG00000018932	snd1	66	82.203	Gadus_morhua
ENSSDUG00000002699	snd1	94	96.048	ENSGAFG00000008421	snd1	100	96.048	Gambusia_affinis
ENSSDUG00000002699	snd1	94	61.564	ENSGACG00000019793	snd1	100	61.564	Gasterosteus_aculeatus
ENSSDUG00000002699	snd1	92	84.538	ENSGGOG00000009614	SND1	99	84.763	Gorilla_gorilla
ENSSDUG00000002699	snd1	94	94.951	ENSHBUG00000019135	snd1	100	94.951	Haplochromis_burtoni
ENSSDUG00000002699	snd1	92	84.093	ENSHGLG00000003618	SND1	98	85.235	Heterocephalus_glaber_female
ENSSDUG00000002699	snd1	92	84.093	ENSHGLG00100012449	SND1	99	84.093	Heterocephalus_glaber_male
ENSSDUG00000002699	snd1	94	92.865	ENSHCOG00000005266	snd1	100	92.865	Hippocampus_comes
ENSSDUG00000002699	snd1	93	89.133	ENSIPUG00000013279	snd1	99	89.133	Ictalurus_punctatus
ENSSDUG00000002699	snd1	92	84.427	ENSSTOG00000002140	SND1	100	83.553	Ictidomys_tridecemlineatus
ENSSDUG00000002699	snd1	92	84.427	ENSJJAG00000009561	Snd1	100	83.553	Jaculus_jaculus
ENSSDUG00000002699	snd1	94	95.939	ENSKMAG00000016997	snd1	100	95.939	Kryptolebias_marmoratus
ENSSDUG00000002699	snd1	94	96.471	ENSLBEG00000013563	snd1	100	94.841	Labrus_bergylta
ENSSDUG00000002699	snd1	92	88.754	ENSLOCG00000015537	snd1	99	87.922	Lepisosteus_oculatus
ENSSDUG00000002699	snd1	94	83.882	ENSLAFG00000009696	SND1	100	83.882	Loxodonta_africana
ENSSDUG00000002699	snd1	92	84.538	ENSMFAG00000038114	SND1	99	84.763	Macaca_fascicularis
ENSSDUG00000002699	snd1	92	84.538	ENSMMUG00000015432	SND1	100	83.662	Macaca_mulatta
ENSSDUG00000002699	snd1	92	84.538	ENSMNEG00000039808	SND1	100	84.780	Macaca_nemestrina
ENSSDUG00000002699	snd1	92	84.427	ENSMLEG00000029040	SND1	100	84.667	Mandrillus_leucophaeus
ENSSDUG00000002699	snd1	94	95.170	ENSMAMG00000011739	snd1	100	95.170	Mastacembelus_armatus
ENSSDUG00000002699	snd1	94	94.951	ENSMZEG00005005681	snd1	100	94.951	Maylandia_zebra
ENSSDUG00000002699	snd1	92	84.427	ENSMICG00000000097	SND1	100	83.553	Microcebus_murinus
ENSSDUG00000002699	snd1	92	84.650	ENSMOCG00000005040	Snd1	100	83.772	Microtus_ochrogaster
ENSSDUG00000002699	snd1	94	95.719	ENSMMOG00000001795	snd1	100	95.719	Mola_mola
ENSSDUG00000002699	snd1	92	83.871	ENSMODG00000015182	SND1	100	83.004	Monodelphis_domestica
ENSSDUG00000002699	snd1	94	95.609	ENSMALG00000012071	snd1	100	95.609	Monopterus_albus
ENSSDUG00000002699	snd1	92	84.452	MGP_CAROLIEiJ_G0028159	Snd1	99	85.042	Mus_caroli
ENSSDUG00000002699	snd1	92	84.228	ENSMUSG00000001424	Snd1	100	83.114	Mus_musculus
ENSSDUG00000002699	snd1	92	84.452	MGP_PahariEiJ_G0021917	Snd1	100	85.042	Mus_pahari
ENSSDUG00000002699	snd1	92	84.452	MGP_SPRETEiJ_G0029159	Snd1	100	83.333	Mus_spretus
ENSSDUG00000002699	snd1	94	83.553	ENSMPUG00000006545	SND1	100	83.553	Mustela_putorius_furo
ENSSDUG00000002699	snd1	91	83.501	ENSMLUG00000017130	SND1	99	83.501	Myotis_lucifugus
ENSSDUG00000002699	snd1	92	84.316	ENSNGAG00000011186	Snd1	100	83.443	Nannospalax_galili
ENSSDUG00000002699	snd1	94	94.951	ENSNBRG00000006681	snd1	100	94.951	Neolamprologus_brichardi
ENSSDUG00000002699	snd1	94	83.662	ENSNLEG00000012263	SND1	100	84.780	Nomascus_leucogenys
ENSSDUG00000002699	snd1	85	91.667	ENSOPRG00000013405	SND1	92	91.667	Ochotona_princeps
ENSSDUG00000002699	snd1	92	84.538	ENSODEG00000011502	SND1	100	83.882	Octodon_degus
ENSSDUG00000002699	snd1	96	94.444	ENSONIG00000011481	snd1	100	94.444	Oreochromis_niloticus
ENSSDUG00000002699	snd1	91	84.045	ENSOANG00000000817	SND1	98	84.045	Ornithorhynchus_anatinus
ENSSDUG00000002699	snd1	94	82.895	ENSOCUG00000001620	SND1	100	82.895	Oryctolagus_cuniculus
ENSSDUG00000002699	snd1	94	93.633	ENSORLG00000015201	snd1	100	93.633	Oryzias_latipes
ENSSDUG00000002699	snd1	94	93.853	ENSORLG00020013991	snd1	100	93.853	Oryzias_latipes_hni
ENSSDUG00000002699	snd1	94	93.853	ENSORLG00015012436	snd1	100	93.853	Oryzias_latipes_hsok
ENSSDUG00000002699	snd1	94	94.182	ENSOMEG00000006406	snd1	100	94.182	Oryzias_melastigma
ENSSDUG00000002699	snd1	92	84.351	ENSOGAG00000013356	SND1	94	83.479	Otolemur_garnettii
ENSSDUG00000002699	snd1	91	82.413	ENSOARG00000002149	SND1	100	82.413	Ovis_aries
ENSSDUG00000002699	snd1	93	83.481	ENSPPAG00000042947	SND1	99	84.650	Pan_paniscus
ENSSDUG00000002699	snd1	94	83.662	ENSPPRG00000004494	SND1	100	83.662	Panthera_pardus
ENSSDUG00000002699	snd1	94	83.553	ENSPTIG00000014214	SND1	100	83.553	Panthera_tigris_altaica
ENSSDUG00000002699	snd1	93	83.481	ENSPTRG00000023911	SND1	99	84.650	Pan_troglodytes
ENSSDUG00000002699	snd1	91	84.763	ENSPANG00000011997	SND1	99	84.763	Papio_anubis
ENSSDUG00000002699	snd1	92	87.321	ENSPKIG00000023494	snd1	99	86.805	Paramormyrops_kingsleyae
ENSSDUG00000002699	snd1	86	94.258	ENSPMGG00000003629	snd1	100	94.258	Periophthalmus_magnuspinnatus
ENSSDUG00000002699	snd1	92	84.427	ENSPEMG00000010240	Snd1	100	83.553	Peromyscus_maniculatus_bairdii
ENSSDUG00000002699	snd1	91	73.702	ENSPMAG00000007915	-	99	73.702	Petromyzon_marinus
ENSSDUG00000002699	snd1	92	84.427	ENSPCIG00000011561	SND1	100	83.553	Phascolarctos_cinereus
ENSSDUG00000002699	snd1	94	95.829	ENSPFOG00000001557	snd1	100	95.829	Poecilia_formosa
ENSSDUG00000002699	snd1	96	94.427	ENSPLAG00000018459	snd1	99	94.427	Poecilia_latipinna
ENSSDUG00000002699	snd1	94	96.048	ENSPMEG00000006803	snd1	100	96.048	Poecilia_mexicana
ENSSDUG00000002699	snd1	94	96.048	ENSPREG00000002189	snd1	100	96.048	Poecilia_reticulata
ENSSDUG00000002699	snd1	85	91.667	ENSPPYG00000017972	SND1	100	91.667	Pongo_abelii
ENSSDUG00000002699	snd1	94	73.684	ENSPCAG00000011305	SND1	100	73.684	Procavia_capensis
ENSSDUG00000002699	snd1	92	84.538	ENSPCOG00000026791	SND1	100	84.780	Propithecus_coquereli
ENSSDUG00000002699	snd1	92	82.314	ENSPVAG00000013945	SND1	100	81.469	Pteropus_vampyrus
ENSSDUG00000002699	snd1	94	94.841	ENSPNYG00000000932	snd1	100	94.841	Pundamilia_nyererei
ENSSDUG00000002699	snd1	93	90.330	ENSPNAG00000001206	snd1	99	90.330	Pygocentrus_nattereri
ENSSDUG00000002699	snd1	92	84.116	ENSRNOG00000031173	Snd1	100	83.202	Rattus_norvegicus
ENSSDUG00000002699	snd1	65	87.879	ENSRBIG00000027782	-	93	87.879	Rhinopithecus_bieti
ENSSDUG00000002699	snd1	92	84.538	ENSRROG00000033020	SND1	100	83.662	Rhinopithecus_roxellana
ENSSDUG00000002699	snd1	92	84.316	ENSSBOG00000032461	SND1	99	84.537	Saimiri_boliviensis_boliviensis
ENSSDUG00000002699	snd1	91	81.236	ENSSHAG00000015359	SND1	100	81.236	Sarcophilus_harrisii
ENSSDUG00000002699	snd1	92	87.916	ENSSFOG00015001103	snd1	99	87.146	Scleropages_formosus
ENSSDUG00000002699	snd1	99	93.375	ENSSMAG00000001932	snd1	99	93.375	Scophthalmus_maximus
ENSSDUG00000002699	snd1	94	92.316	ENSSLDG00000001950	snd1	100	92.316	Seriola_lalandi_dorsalis
ENSSDUG00000002699	snd1	81	80.118	ENSSARG00000004877	SND1	92	80.118	Sorex_araneus
ENSSDUG00000002699	snd1	67	79.932	ENSSPUG00000017586	SND1	96	81.109	Sphenodon_punctatus
ENSSDUG00000002699	snd1	68	96.954	ENSSPAG00000021398	snd1	99	96.954	Stegastes_partitus
ENSSDUG00000002699	snd1	92	84.316	ENSSSCG00000016590	SND1	100	83.443	Sus_scrofa
ENSSDUG00000002699	snd1	94	93.289	ENSTRUG00000014067	snd1	100	92.755	Takifugu_rubripes
ENSSDUG00000002699	snd1	94	92.865	ENSTNIG00000011019	snd1	100	92.865	Tetraodon_nigroviridis
ENSSDUG00000002699	snd1	87	78.824	ENSTBEG00000003999	SND1	100	78.824	Tupaia_belangeri
ENSSDUG00000002699	snd1	92	80.089	ENSTTRG00000006059	SND1	100	79.276	Tursiops_truncatus
ENSSDUG00000002699	snd1	64	76.501	ENSUAMG00000002820	-	89	76.501	Ursus_americanus
ENSSDUG00000002699	snd1	82	83.650	ENSUAMG00000005604	-	93	83.650	Ursus_americanus
ENSSDUG00000002699	snd1	94	83.662	ENSUMAG00000005960	SND1	100	83.662	Ursus_maritimus
ENSSDUG00000002699	snd1	72	91.667	ENSVPAG00000008302	SND1	74	91.667	Vicugna_pacos
ENSSDUG00000002699	snd1	94	83.662	ENSVVUG00000007226	SND1	100	83.662	Vulpes_vulpes
ENSSDUG00000002699	snd1	91	80.045	ENSXETG00000023043	snd1	100	80.251	Xenopus_tropicalis
ENSSDUG00000002699	snd1	86	93.824	ENSXCOG00000013629	snd1	99	93.824	Xiphophorus_couchianus
ENSSDUG00000002699	snd1	94	96.597	ENSXMAG00000011469	snd1	100	96.597	Xiphophorus_maculatus