EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSDUG00000002828 (Gene tree)
Gene ID
111236101
Gene Symbol
cpsf3
Alias
si:dkey-81b15.1|wu:fc32f10|zgc:101655
Full Name
cleavage and polyadenylation specificity factor subunit 3-like
Gene Type
protein_coding
Species
Seriola_dumerili
Status
putative
Strand
Minus strand
Length
10192 bases
Position
chrBDQW01000025.1:2754145-2764336
Accession
111236101
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSDUP00000003795CPSF73-100_CPF11718.83e-5211
ENSSDUP00000003850CPSF73-100_CPF11718.81.5e-4311
ENSSDUP00000003795Beta-CaspPF10996.89.3e-3411
ENSSDUP00000003850Beta-CaspPF10996.89.9e-3411
ENSSDUP00000003795Lactamase_BPF00753.272.8e-1811
ENSSDUP00000003850Lactamase_BPF00753.272.8e-1811
ENSSDUP00000003795RMMBLPF07521.121.8e-2111
ENSSDUP00000003850RMMBLPF07521.121.9e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSDUT00000003878-3098XM_022764716ENSSDUP00000003795704 (aa)XP_022620437UPI000BBE6F47
ENSSDUT00000003933-2166-ENSSDUP00000003850721 (aa)--
Gene Model
Click here to download ENSSDUG00000002828's gene model file
Pathways
Pathway IDPathway NameSource
sdu03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000002828's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSDUG00000002828cpsf36937.475ENSSDUG00000003980ints118237.475
ENSSDUG00000002828cpsf39788.372ENSSDUG00000018498CPSF39988.372
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSDUG00000002828cpsf39685.609ENSG00000119203CPSF310098.529Homo_sapiens
ENSSDUG00000002828cpsf37295.874ENSAPOG00000012241CPSF39195.874Acanthochromis_polyacanthus
ENSSDUG00000002828cpsf39795.773ENSAPOG00000022087cpsf310095.773Acanthochromis_polyacanthus
ENSSDUG00000002828cpsf39685.903ENSAMEG00000008493CPSF39985.903Ailuropoda_melanoleuca
ENSSDUG00000002828cpsf38886.486ENSACIG00000023663CPSF39986.486Amphilophus_citrinellus
ENSSDUG00000002828cpsf38890.735ENSACIG00000009846cpsf310084.279Amphilophus_citrinellus
ENSSDUG00000002828cpsf39788.261ENSAOCG00000010077CPSF310088.261Amphiprion_ocellaris
ENSSDUG00000002828cpsf39795.190ENSAOCG00000022056cpsf310095.190Amphiprion_ocellaris
ENSSDUG00000002828cpsf39795.335ENSAPEG00000019526cpsf310095.335Amphiprion_percula
ENSSDUG00000002828cpsf39788.261ENSAPEG00000021167CPSF310088.261Amphiprion_percula
ENSSDUG00000002828cpsf39784.593ENSATEG00000014525CPSF39984.593Anabas_testudineus
ENSSDUG00000002828cpsf39795.760ENSATEG00000003959cpsf39995.760Anabas_testudineus
ENSSDUG00000002828cpsf39485.672ENSAPLG00000006941CPSF39885.672Anas_platyrhynchos
ENSSDUG00000002828cpsf38983.123ENSACAG00000001759CPSF39983.123Anolis_carolinensis
ENSSDUG00000002828cpsf39680.617ENSANAG00000031254CPSF39981.231Aotus_nancymaae
ENSSDUG00000002828cpsf39494.713ENSACLG00000014484cpsf39994.713Astatotilapia_calliptera
ENSSDUG00000002828cpsf38886.804ENSACLG00000018846CPSF39986.804Astatotilapia_calliptera
ENSSDUG00000002828cpsf39787.936ENSAMXG00000004786cpsf39987.936Astyanax_mexicanus
ENSSDUG00000002828cpsf39685.903ENSBTAG00000019735CPSF39985.903Bos_taurus
ENSSDUG00000002828cpsf38857.571WBGene00013460cpsf-38957.571Caenorhabditis_elegans
ENSSDUG00000002828cpsf39685.463ENSCJAG00000006276CPSF39985.463Callithrix_jacchus
ENSSDUG00000002828cpsf39685.903ENSCAFG00000003375CPSF39585.903Canis_familiaris
ENSSDUG00000002828cpsf38888.026ENSCAFG00020026799CPSF39988.026Canis_lupus_dingo
ENSSDUG00000002828cpsf39685.903ENSCHIG00000013973CPSF39985.903Capra_hircus
ENSSDUG00000002828cpsf39685.609ENSTSYG00000002967CPSF39985.609Carlito_syrichta
ENSSDUG00000002828cpsf39486.316ENSCAPG00000013851CPSF39986.316Cavia_aperea
ENSSDUG00000002828cpsf39686.197ENSCPOG00000011299CPSF39986.197Cavia_porcellus
ENSSDUG00000002828cpsf39685.463ENSCCAG00000036730CPSF39985.586Cebus_capucinus
ENSSDUG00000002828cpsf39683.700ENSCATG00000014770CPSF39990.862Cercocebus_atys
ENSSDUG00000002828cpsf39686.197ENSCLAG00000002727CPSF39986.197Chinchilla_lanigera
ENSSDUG00000002828cpsf39677.680ENSCSAG00000007125CPSF39977.680Chlorocebus_sabaeus
ENSSDUG00000002828cpsf383100.000ENSCHOG00000000180CPSF38561.444Choloepus_hoffmanni
ENSSDUG00000002828cpsf39785.631ENSCPBG00000014074CPSF39985.631Chrysemys_picta_bellii
ENSSDUG00000002828cpsf39667.595ENSCING00000007214-9767.595Ciona_intestinalis
ENSSDUG00000002828cpsf39676.093ENSCANG00000034435CPSF39976.093Colobus_angolensis_palliatus
ENSSDUG00000002828cpsf39685.463ENSCGRG00001013134Cpsf39985.463Cricetulus_griseus_chok1gshd
ENSSDUG00000002828cpsf39685.463ENSCGRG00000018319Cpsf39985.463Cricetulus_griseus_crigri
ENSSDUG00000002828cpsf39786.647ENSCSEG00000002021CPSF39986.822Cynoglossus_semilaevis
ENSSDUG00000002828cpsf39787.936ENSCVAG00000015067CPSF39987.936Cyprinodon_variegatus
ENSSDUG00000002828cpsf39786.957ENSDARG00000027649cpsf310086.957Danio_rerio
ENSSDUG00000002828cpsf39684.897ENSDNOG00000008940CPSF39584.897Dasypus_novemcinctus
ENSSDUG00000002828cpsf39286.769ENSDORG00000014263Cpsf39986.769Dipodomys_ordii
ENSSDUG00000002828cpsf39666.814FBgn0261065Cpsf739966.814Drosophila_melanogaster
ENSSDUG00000002828cpsf39274.462ENSETEG00000003893CPSF39974.462Echinops_telfairi
ENSSDUG00000002828cpsf39774.859ENSEBUG00000009018cpsf39974.859Eptatretus_burgeri
ENSSDUG00000002828cpsf39685.903ENSEASG00005003970CPSF39985.903Equus_asinus_asinus
ENSSDUG00000002828cpsf39685.903ENSECAG00000019911CPSF39690.572Equus_caballus
ENSSDUG00000002828cpsf39671.512ENSEEUG00000015422CPSF39971.512Erinaceus_europaeus
ENSSDUG00000002828cpsf39790.566ENSELUG00000013775cpsf39990.566Esox_lucius
ENSSDUG00000002828cpsf39685.903ENSFCAG00000007852CPSF39985.903Felis_catus
ENSSDUG00000002828cpsf39185.162ENSFALG00000006572CPSF310085.162Ficedula_albicollis
ENSSDUG00000002828cpsf39785.029ENSFDAG00000006317CPSF39985.029Fukomys_damarensis
ENSSDUG00000002828cpsf35767.805ENSFHEG00000012186CPSF310067.805Fundulus_heteroclitus
ENSSDUG00000002828cpsf39791.983ENSFHEG00000014774cpsf310091.983Fundulus_heteroclitus
ENSSDUG00000002828cpsf39790.421ENSGMOG00000003157cpsf310090.421Gadus_morhua
ENSSDUG00000002828cpsf39785.631ENSGALG00000016424CPSF39985.631Gallus_gallus
ENSSDUG00000002828cpsf39788.551ENSGAFG00000008016CPSF310088.551Gambusia_affinis
ENSSDUG00000002828cpsf38890.240ENSGAFG00000019449cpsf310083.819Gambusia_affinis
ENSSDUG00000002828cpsf36681.064ENSGAGG00000025583CPSF39381.064Gopherus_agassizii
ENSSDUG00000002828cpsf39683.477ENSGGOG00000001757CPSF39196.360Gorilla_gorilla
ENSSDUG00000002828cpsf39794.606ENSHBUG00000001188cpsf310094.606Haplochromis_burtoni
ENSSDUG00000002828cpsf35780.741ENSHBUG00000014332CPSF310080.741Haplochromis_burtoni
ENSSDUG00000002828cpsf39785.277ENSHGLG00000000666CPSF39985.277Heterocephalus_glaber_female
ENSSDUG00000002828cpsf39785.277ENSHGLG00100007765CPSF39985.277Heterocephalus_glaber_male
ENSSDUG00000002828cpsf39791.813ENSHCOG00000007251cpsf39991.813Hippocampus_comes
ENSSDUG00000002828cpsf39886.744ENSHCOG00000015957CPSF39986.744Hippocampus_comes
ENSSDUG00000002828cpsf39788.372ENSIPUG00000023488cpsf39988.372Ictalurus_punctatus
ENSSDUG00000002828cpsf39685.609ENSSTOG00000004476CPSF39985.609Ictidomys_tridecemlineatus
ENSSDUG00000002828cpsf39685.066ENSJJAG00000023415Cpsf39985.066Jaculus_jaculus
ENSSDUG00000002828cpsf39787.645ENSKMAG00000007317CPSF39987.645Kryptolebias_marmoratus
ENSSDUG00000002828cpsf39792.711ENSKMAG00000002806cpsf310092.711Kryptolebias_marmoratus
ENSSDUG00000002828cpsf39984.648ENSLBEG00000020569cpsf39784.648Labrus_bergylta
ENSSDUG00000002828cpsf35389.600ENSLBEG00000015018-9989.600Labrus_bergylta
ENSSDUG00000002828cpsf39388.889ENSLBEG00000013492CPSF39988.889Labrus_bergylta
ENSSDUG00000002828cpsf39779.710ENSLACG00000008308CPSF39979.710Latimeria_chalumnae
ENSSDUG00000002828cpsf39787.590ENSLOCG00000016823cpsf310087.590Lepisosteus_oculatus
ENSSDUG00000002828cpsf39584.661ENSLAFG00000009467CPSF39984.661Loxodonta_africana
ENSSDUG00000002828cpsf39685.463ENSMFAG00000001339CPSF39593.568Macaca_fascicularis
ENSSDUG00000002828cpsf39185.116ENSMMUG00000018038CPSF39293.568Macaca_mulatta
ENSSDUG00000002828cpsf38896.032ENSMNEG00000039447CPSF39996.032Macaca_nemestrina
ENSSDUG00000002828cpsf39685.609ENSMLEG00000026825CPSF39396.154Mandrillus_leucophaeus
ENSSDUG00000002828cpsf39795.190ENSMAMG00000003076cpsf310095.190Mastacembelus_armatus
ENSSDUG00000002828cpsf38885.873ENSMAMG00000008835CPSF39979.710Mastacembelus_armatus
ENSSDUG00000002828cpsf39788.406ENSMZEG00005006258CPSF310088.406Maylandia_zebra
ENSSDUG00000002828cpsf39794.606ENSMZEG00005014358cpsf310094.606Maylandia_zebra
ENSSDUG00000002828cpsf39485.757ENSMGAG00000013995CPSF310085.757Meleagris_gallopavo
ENSSDUG00000002828cpsf35275.936ENSMAUG00000000166Cpsf39975.936Mesocricetus_auratus
ENSSDUG00000002828cpsf39680.966ENSMICG00000002363CPSF39980.966Microcebus_murinus
ENSSDUG00000002828cpsf39682.718ENSMOCG00000020067Cpsf39982.718Microtus_ochrogaster
ENSSDUG00000002828cpsf39385.276ENSMMOG00000018212CPSF39985.276Mola_mola
ENSSDUG00000002828cpsf37177.500ENSMMOG00000011923CPSF38477.500Mola_mola
ENSSDUG00000002828cpsf39684.157ENSMODG00000014703CPSF39984.157Monodelphis_domestica
ENSSDUG00000002828cpsf39795.481ENSMALG00000016416cpsf310095.481Monopterus_albus
ENSSDUG00000002828cpsf38984.094ENSMALG00000011474CPSF39984.094Monopterus_albus
ENSSDUG00000002828cpsf39685.756MGP_CAROLIEiJ_G0017640Cpsf39985.756Mus_caroli
ENSSDUG00000002828cpsf39685.756ENSMUSG00000054309Cpsf39697.034Mus_musculus
ENSSDUG00000002828cpsf39685.609MGP_PahariEiJ_G0029397Cpsf39985.609Mus_pahari
ENSSDUG00000002828cpsf39685.756MGP_SPRETEiJ_G0018481Cpsf39985.756Mus_spretus
ENSSDUG00000002828cpsf39685.924ENSMPUG00000013213CPSF39985.924Mustela_putorius_furo
ENSSDUG00000002828cpsf39685.337ENSMLUG00000010636CPSF39985.337Myotis_lucifugus
ENSSDUG00000002828cpsf39685.463ENSNGAG00000019836Cpsf39985.463Nannospalax_galili
ENSSDUG00000002828cpsf39794.023ENSNBRG00000004770cpsf310094.023Neolamprologus_brichardi
ENSSDUG00000002828cpsf38886.804ENSNBRG00000010525CPSF39986.804Neolamprologus_brichardi
ENSSDUG00000002828cpsf39685.463ENSNLEG00000013359CPSF39196.360Nomascus_leucogenys
ENSSDUG00000002828cpsf39654.919ENSMEUG00000013117-9955.066Notamacropus_eugenii
ENSSDUG00000002828cpsf39677.647ENSOPRG00000008902CPSF39977.647Ochotona_princeps
ENSSDUG00000002828cpsf39686.637ENSODEG00000003129CPSF39986.637Octodon_degus
ENSSDUG00000002828cpsf39794.606ENSONIG00000018812cpsf310094.606Oreochromis_niloticus
ENSSDUG00000002828cpsf37983.452ENSOANG00000008577CPSF39983.452Ornithorhynchus_anatinus
ENSSDUG00000002828cpsf39685.903ENSOCUG00000003728CPSF39985.903Oryctolagus_cuniculus
ENSSDUG00000002828cpsf39791.399ENSORLG00000018854cpsf310091.399Oryzias_latipes
ENSSDUG00000002828cpsf39791.254ENSORLG00020013331cpsf310091.254Oryzias_latipes_hni
ENSSDUG00000002828cpsf39791.399ENSORLG00015011017cpsf310091.399Oryzias_latipes_hsok
ENSSDUG00000002828cpsf39791.691ENSOMEG00000010647cpsf39691.691Oryzias_melastigma
ENSSDUG00000002828cpsf39675.918ENSOGAG00000001680CPSF39975.918Otolemur_garnettii
ENSSDUG00000002828cpsf39685.903ENSOARG00000015073CPSF39985.903Ovis_aries
ENSSDUG00000002828cpsf39685.609ENSPPAG00000042457CPSF39196.360Pan_paniscus
ENSSDUG00000002828cpsf39685.903ENSPPRG00000016790CPSF39986.050Panthera_pardus
ENSSDUG00000002828cpsf39686.283ENSPTIG00000003920CPSF39986.431Panthera_tigris_altaica
ENSSDUG00000002828cpsf39685.609ENSPTRG00000011638CPSF39196.360Pan_troglodytes
ENSSDUG00000002828cpsf39685.609ENSPANG00000016798CPSF39593.568Papio_anubis
ENSSDUG00000002828cpsf39788.696ENSPKIG00000023646cpsf310088.696Paramormyrops_kingsleyae
ENSSDUG00000002828cpsf39684.751ENSPSIG00000016144CPSF39984.751Pelodiscus_sinensis
ENSSDUG00000002828cpsf39582.555ENSPMGG00000006141-9983.439Periophthalmus_magnuspinnatus
ENSSDUG00000002828cpsf35779.259ENSPMGG00000015311CPSF310079.259Periophthalmus_magnuspinnatus
ENSSDUG00000002828cpsf39685.463ENSPEMG00000017668Cpsf39985.609Peromyscus_maniculatus_bairdii
ENSSDUG00000002828cpsf37788.398ENSPMAG00000004841cpsf39988.398Petromyzon_marinus
ENSSDUG00000002828cpsf39485.414ENSPCIG00000009823CPSF39886.196Phascolarctos_cinereus
ENSSDUG00000002828cpsf39792.274ENSPFOG00000015922cpsf310092.274Poecilia_formosa
ENSSDUG00000002828cpsf39788.261ENSPFOG00000010418-10088.261Poecilia_formosa
ENSSDUG00000002828cpsf35782.222ENSPLAG00000021300-10082.222Poecilia_latipinna
ENSSDUG00000002828cpsf39792.274ENSPLAG00000000882cpsf310092.274Poecilia_latipinna
ENSSDUG00000002828cpsf39792.420ENSPMEG00000018309cpsf310092.420Poecilia_mexicana
ENSSDUG00000002828cpsf39782.464ENSPREG00000004482CPSF310082.464Poecilia_reticulata
ENSSDUG00000002828cpsf38890.080ENSPREG00000014875cpsf310083.673Poecilia_reticulata
ENSSDUG00000002828cpsf39681.351ENSPPYG00000012666CPSF39981.351Pongo_abelii
ENSSDUG00000002828cpsf38364.850ENSPCAG00000015042CPSF39064.850Procavia_capensis
ENSSDUG00000002828cpsf38685.567ENSPCOG00000023016CPSF39985.567Propithecus_coquereli
ENSSDUG00000002828cpsf39685.777ENSPVAG00000005324CPSF39985.777Pteropus_vampyrus
ENSSDUG00000002828cpsf39794.606ENSPNYG00000004405cpsf310094.606Pundamilia_nyererei
ENSSDUG00000002828cpsf37791.144ENSPNYG00000021047CPSF39091.144Pundamilia_nyererei
ENSSDUG00000002828cpsf39787.936ENSPNAG00000023060cpsf39987.936Pygocentrus_nattereri
ENSSDUG00000002828cpsf39685.756ENSRNOG00000052418Cpsf39985.756Rattus_norvegicus
ENSSDUG00000002828cpsf39680.910ENSRBIG00000041615CPSF39982.016Rhinopithecus_bieti
ENSSDUG00000002828cpsf39685.609ENSRROG00000033792CPSF39985.609Rhinopithecus_roxellana
ENSSDUG00000002828cpsf38342.922YLR277CYSH18542.922Saccharomyces_cerevisiae
ENSSDUG00000002828cpsf39482.406ENSSBOG00000027263CPSF39782.406Saimiri_boliviensis_boliviensis
ENSSDUG00000002828cpsf39685.463ENSSHAG00000007024CPSF39985.463Sarcophilus_harrisii
ENSSDUG00000002828cpsf39788.696ENSSFOG00015002108cpsf310088.696Scleropages_formosus
ENSSDUG00000002828cpsf39388.432ENSSMAG00000020534CPSF39788.432Scophthalmus_maximus
ENSSDUG00000002828cpsf39788.372ENSSLDG00000005234CPSF39988.372Seriola_lalandi_dorsalis
ENSSDUG00000002828cpsf310099.574ENSSLDG00000008469cpsf310099.574Seriola_lalandi_dorsalis
ENSSDUG00000002828cpsf38782.895ENSSARG00000005186CPSF39082.895Sorex_araneus
ENSSDUG00000002828cpsf39484.305ENSSPUG00000015525CPSF39784.305Sphenodon_punctatus
ENSSDUG00000002828cpsf39788.372ENSSPAG00000002906CPSF39988.372Stegastes_partitus
ENSSDUG00000002828cpsf39795.190ENSSPAG00000018579cpsf310095.190Stegastes_partitus
ENSSDUG00000002828cpsf39685.903ENSSSCG00000020799CPSF39985.903Sus_scrofa
ENSSDUG00000002828cpsf39685.234ENSTGUG00000013016CPSF310085.234Taeniopygia_guttata
ENSSDUG00000002828cpsf39990.831ENSTRUG00000007030cpsf39990.831Takifugu_rubripes
ENSSDUG00000002828cpsf35773.086ENSTRUG00000013905CPSF39973.086Takifugu_rubripes
ENSSDUG00000002828cpsf38290.385ENSTBEG00000002707CPSF38490.385Tupaia_belangeri
ENSSDUG00000002828cpsf38472.881ENSTTRG00000000861CPSF38772.881Tursiops_truncatus
ENSSDUG00000002828cpsf39486.212ENSUAMG00000007535CPSF39586.212Ursus_americanus
ENSSDUG00000002828cpsf39185.581ENSUMAG00000003676CPSF39985.581Ursus_maritimus
ENSSDUG00000002828cpsf39086.278ENSVPAG00000008041CPSF310086.278Vicugna_pacos
ENSSDUG00000002828cpsf39685.903ENSVVUG00000002194CPSF39985.903Vulpes_vulpes
ENSSDUG00000002828cpsf39784.783ENSXETG00000008263cpsf39984.783Xenopus_tropicalis
ENSSDUG00000002828cpsf35280.914ENSXCOG00000000957-8780.914Xiphophorus_couchianus
ENSSDUG00000002828cpsf39792.420ENSXCOG00000019695cpsf310092.420Xiphophorus_couchianus
ENSSDUG00000002828cpsf39792.711ENSXMAG00000009784cpsf310092.711Xiphophorus_maculatus
ENSSDUG00000002828cpsf39788.406ENSXMAG00000027291CPSF310088.406Xiphophorus_maculatus

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