EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000002934 (Gene tree)
Gene ID: 111231922
Gene Symbol: -
Alias: -
Full Name: ras-related protein Rab-11B
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 3690 bases
Position: chrBDQW01000321.1:4174818-4178507
Accession: 111231922
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000003886	MMR_HSR1	PF01926.23	3.1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000003969	-	1622	XM_022759199	ENSSDUP00000003886	218 (aa)	XP_022614920	UPI00022B0D84

Gene Model

Click here to download ENSSDUG00000002934's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu04144	Endocytosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000002934's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000002934	-	96	39.048	ENSSDUG00000013325	rab30	97	39.048
ENSSDUG00000002934	-	78	45.614	ENSSDUG00000005960	rab18b	83	45.614
ENSSDUG00000002934	-	77	37.500	ENSSDUG00000014765	rabl2	72	37.500
ENSSDUG00000002934	-	80	44.253	ENSSDUG00000005719	si:dkey-16l2.16	98	40.670
ENSSDUG00000002934	-	72	35.669	ENSSDUG00000009251	rab6bb	75	35.669
ENSSDUG00000002934	-	89	50.256	ENSSDUG00000013724	rab2a	96	50.256
ENSSDUG00000002934	-	100	96.330	ENSSDUG00000002965	rab11ba	100	96.330
ENSSDUG00000002934	-	70	34.839	ENSSDUG00000017779	kras	87	35.928
ENSSDUG00000002934	-	86	36.458	ENSSDUG00000005037	-	86	36.458
ENSSDUG00000002934	-	77	52.695	ENSSDUG00000004551	rab14	78	52.695
ENSSDUG00000002934	-	73	32.500	ENSSDUG00000009122	rheb	86	32.500
ENSSDUG00000002934	-	76	48.795	ENSSDUG00000004950	rab35b	94	44.041
ENSSDUG00000002934	-	74	30.061	ENSSDUG00000007311	rhebl1	88	30.061
ENSSDUG00000002934	-	80	46.023	ENSSDUG00000014091	-	83	46.023
ENSSDUG00000002934	-	66	42.667	ENSSDUG00000019885	-	62	42.667
ENSSDUG00000002934	-	74	48.447	ENSSDUG00000023008	rab5c	73	48.447
ENSSDUG00000002934	-	96	45.455	ENSSDUG00000004698	rab1ba	99	45.455
ENSSDUG00000002934	-	99	63.470	ENSSDUG00000009735	rab25a	99	63.470
ENSSDUG00000002934	-	80	70.286	ENSSDUG00000006260	rab25b	90	70.286
ENSSDUG00000002934	-	79	33.721	ENSSDUG00000023508	rab23	79	34.969
ENSSDUG00000002934	-	74	33.537	ENSSDUG00000010675	si:ch73-116o1.2	78	35.227
ENSSDUG00000002934	-	82	41.111	ENSSDUG00000006618	RAB17	78	41.111
ENSSDUG00000002934	-	89	32.000	ENSSDUG00000021882	rab6ba	92	32.000
ENSSDUG00000002934	-	72	39.752	ENSSDUG00000003386	rab9a	79	39.752
ENSSDUG00000002934	-	72	36.943	ENSSDUG00000013496	-	75	36.943
ENSSDUG00000002934	-	72	37.580	ENSSDUG00000018970	RAB6B	74	37.580
ENSSDUG00000002934	-	74	31.792	ENSSDUG00000015078	rasl11a	67	31.792
ENSSDUG00000002934	-	72	39.877	ENSSDUG00000008011	-	78	39.877
ENSSDUG00000002934	-	54	30.579	ENSSDUG00000010935	arl4d	59	30.579
ENSSDUG00000002934	-	68	35.333	ENSSDUG00000019086	hrasb	85	36.420
ENSSDUG00000002934	-	96	45.714	ENSSDUG00000022535	RAB1A	93	45.714
ENSSDUG00000002934	-	82	38.043	ENSSDUG00000013968	rab33a	76	38.043
ENSSDUG00000002934	-	74	42.593	ENSSDUG00000004633	RAB15	76	42.593
ENSSDUG00000002934	-	83	41.530	ENSSDUG00000011851	rab42a	84	41.530
ENSSDUG00000002934	-	74	32.934	ENSSDUG00000014082	si:cabz01085950.1	82	32.934
ENSSDUG00000002934	-	94	42.157	ENSSDUG00000009835	rab5aa	89	42.157
ENSSDUG00000002934	-	76	43.373	ENSSDUG00000005627	rab15	78	43.373
ENSSDUG00000002934	-	71	34.375	ENSSDUG00000019738	si:dkey-13a21.4	78	34.375
ENSSDUG00000002934	-	99	82.949	ENSSDUG00000006278	rab11al	99	82.949
ENSSDUG00000002934	-	74	45.679	ENSSDUG00000003823	rab18a	79	45.679
ENSSDUG00000002934	-	100	86.239	ENSSDUG00000002580	rab11a	100	86.239
ENSSDUG00000002934	-	98	43.981	ENSSDUG00000016888	rab1ab	99	39.834
ENSSDUG00000002934	-	53	30.252	ENSSDUG00000012868	arl4cb	60	30.252
ENSSDUG00000002934	-	79	40.678	ENSSDUG00000007575	rab9b	86	40.678
ENSSDUG00000002934	-	79	47.399	ENSSDUG00000006307	-	87	47.399
ENSSDUG00000002934	-	71	33.540	ENSSDUG00000006543	RAB29	80	33.540
ENSSDUG00000002934	-	74	42.857	ENSSDUG00000017131	rab22a	83	42.857
ENSSDUG00000002934	-	96	44.550	ENSSDUG00000004445	zgc:171927	99	44.550
ENSSDUG00000002934	-	77	52.096	ENSSDUG00000013050	-	78	52.096
ENSSDUG00000002934	-	100	97.706	ENSSDUG00000013558	rab11bb	100	97.706
ENSSDUG00000002934	-	75	31.098	ENSSDUG00000016858	-	89	31.098
ENSSDUG00000002934	-	75	30.857	ENSSDUG00000022959	rasl11b	69	30.857
ENSSDUG00000002934	-	78	39.884	ENSSDUG00000008151	zgc:101559	74	39.884
ENSSDUG00000002934	-	78	33.880	ENSSDUG00000010942	rab34a	68	33.880
ENSSDUG00000002934	-	95	33.484	ENSSDUG00000001791	rab33ba	90	33.484
ENSSDUG00000002934	-	75	42.424	ENSSDUG00000008505	rab12	84	37.736

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000002934	-	100	97.706	ENSAPOG00000023455	rab11bb	100	97.706	Acanthochromis_polyacanthus
ENSSDUG00000002934	-	100	85.780	ENSACIG00000019631	rab11bb	100	85.780	Amphilophus_citrinellus
ENSSDUG00000002934	-	100	100.000	ENSACIG00000024376	-	100	100.000	Amphilophus_citrinellus
ENSSDUG00000002934	-	100	100.000	ENSAOCG00000018849	-	100	100.000	Amphiprion_ocellaris
ENSSDUG00000002934	-	100	97.706	ENSAOCG00000018239	rab11bb	100	97.706	Amphiprion_ocellaris
ENSSDUG00000002934	-	100	97.706	ENSAPEG00000016590	rab11bb	100	97.706	Amphiprion_percula
ENSSDUG00000002934	-	100	99.541	ENSATEG00000023725	-	100	99.541	Anabas_testudineus
ENSSDUG00000002934	-	100	97.706	ENSATEG00000017696	rab11bb	100	97.706	Anabas_testudineus
ENSSDUG00000002934	-	94	98.544	ENSAPLG00000011046	-	94	98.544	Anas_platyrhynchos
ENSSDUG00000002934	-	100	100.000	ENSACLG00000005446	-	100	100.000	Astatotilapia_calliptera
ENSSDUG00000002934	-	100	97.706	ENSACLG00000007076	rab11bb	100	97.706	Astatotilapia_calliptera
ENSSDUG00000002934	-	100	96.789	ENSAMXG00000037623	-	100	96.789	Astyanax_mexicanus
ENSSDUG00000002934	-	100	99.083	ENSAMXG00000042655	rab11bb	100	99.083	Astyanax_mexicanus
ENSSDUG00000002934	-	100	96.789	ENSBTAG00000002475	RAB11B	100	96.789	Bos_taurus
ENSSDUG00000002934	-	96	95.215	ENSCHIG00000022426	-	93	95.215	Capra_hircus
ENSSDUG00000002934	-	100	96.789	ENSCATG00000029188	-	100	96.789	Cercocebus_atys
ENSSDUG00000002934	-	100	97.706	ENSCPBG00000017056	-	100	97.706	Chrysemys_picta_bellii
ENSSDUG00000002934	-	100	99.541	ENSCSEG00000007239	-	100	99.541	Cynoglossus_semilaevis
ENSSDUG00000002934	-	100	97.706	ENSCSEG00000012149	rab11bb	100	97.706	Cynoglossus_semilaevis
ENSSDUG00000002934	-	100	97.706	ENSCVAG00000017021	-	100	97.706	Cyprinodon_variegatus
ENSSDUG00000002934	-	100	99.083	ENSCVAG00000019718	-	100	99.083	Cyprinodon_variegatus
ENSSDUG00000002934	-	100	95.872	ENSCVAG00000019751	-	100	95.872	Cyprinodon_variegatus
ENSSDUG00000002934	-	100	97.706	ENSDARG00000090086	rab11bb	100	97.706	Danio_rerio
ENSSDUG00000002934	-	99	94.470	ENSETEG00000000905	-	99	94.470	Echinops_telfairi
ENSSDUG00000002934	-	99	94.419	ENSEASG00005003708	-	99	94.419	Equus_asinus_asinus
ENSSDUG00000002934	-	99	94.419	ENSECAG00000000716	RAB11B	99	94.419	Equus_caballus
ENSSDUG00000002934	-	100	97.706	ENSELUG00000021148	rab11bb	100	97.706	Esox_lucius
ENSSDUG00000002934	-	100	98.624	ENSELUG00000020948	-	98	100.000	Esox_lucius
ENSSDUG00000002934	-	100	97.706	ENSELUG00000000916	-	100	97.706	Esox_lucius
ENSSDUG00000002934	-	100	97.706	ENSFALG00000011828	-	100	97.706	Ficedula_albicollis
ENSSDUG00000002934	-	100	99.541	ENSFHEG00000022676	-	100	99.541	Fundulus_heteroclitus
ENSSDUG00000002934	-	100	97.706	ENSFHEG00000018353	rab11bb	100	97.706	Fundulus_heteroclitus
ENSSDUG00000002934	-	99	95.370	ENSGMOG00000009668	-	99	95.370	Gadus_morhua
ENSSDUG00000002934	-	100	97.706	ENSGMOG00000009211	rab11bb	100	97.706	Gadus_morhua
ENSSDUG00000002934	-	100	97.706	ENSGALG00000000613	RAB11B	100	97.706	Gallus_gallus
ENSSDUG00000002934	-	100	97.706	ENSGAFG00000007102	rab11bb	100	97.706	Gambusia_affinis
ENSSDUG00000002934	-	100	97.248	ENSGACG00000015479	rab11bb	100	97.248	Gasterosteus_aculeatus
ENSSDUG00000002934	-	100	95.413	ENSGACG00000013297	-	99	95.413	Gasterosteus_aculeatus
ENSSDUG00000002934	-	100	96.789	ENSGGOG00000014516	RAB11B	100	96.789	Gorilla_gorilla
ENSSDUG00000002934	-	100	97.706	ENSHBUG00000014777	rab11bb	100	97.706	Haplochromis_burtoni
ENSSDUG00000002934	-	100	100.000	ENSHBUG00000009947	-	100	100.000	Haplochromis_burtoni
ENSSDUG00000002934	-	100	93.578	ENSHCOG00000000985	-	100	93.578	Hippocampus_comes
ENSSDUG00000002934	-	100	96.789	ENSHCOG00000000954	-	100	96.789	Hippocampus_comes
ENSSDUG00000002934	-	100	98.165	ENSHCOG00000002423	rab11bb	100	98.165	Hippocampus_comes
ENSSDUG00000002934	-	100	98.624	ENSIPUG00000019927	rab11bb	100	98.624	Ictalurus_punctatus
ENSSDUG00000002934	-	100	96.789	ENSIPUG00000025100	rab11b	100	96.789	Ictalurus_punctatus
ENSSDUG00000002934	-	100	97.706	ENSKMAG00000009033	rab11bb	100	97.706	Kryptolebias_marmoratus
ENSSDUG00000002934	-	100	100.000	ENSKMAG00000006170	-	100	100.000	Kryptolebias_marmoratus
ENSSDUG00000002934	-	100	91.743	ENSLBEG00000005981	-	100	91.743	Labrus_bergylta
ENSSDUG00000002934	-	100	99.083	ENSLBEG00000004172	-	100	99.083	Labrus_bergylta
ENSSDUG00000002934	-	100	97.706	ENSLBEG00000015248	rab11bb	100	97.706	Labrus_bergylta
ENSSDUG00000002934	-	100	97.706	ENSLACG00000016857	-	100	97.706	Latimeria_chalumnae
ENSSDUG00000002934	-	100	96.789	ENSMFAG00000003654	RAB11B	100	96.789	Macaca_fascicularis
ENSSDUG00000002934	-	100	96.789	ENSMLEG00000030601	-	100	96.789	Mandrillus_leucophaeus
ENSSDUG00000002934	-	100	97.248	ENSMAMG00000006378	rab11bb	100	97.248	Mastacembelus_armatus
ENSSDUG00000002934	-	100	98.624	ENSMAMG00000018533	-	100	98.624	Mastacembelus_armatus
ENSSDUG00000002934	-	100	100.000	ENSMZEG00005010975	-	100	100.000	Maylandia_zebra
ENSSDUG00000002934	-	100	97.706	ENSMZEG00005003352	rab11bb	100	97.706	Maylandia_zebra
ENSSDUG00000002934	-	100	96.789	ENSMICG00000034065	-	100	96.789	Microcebus_murinus
ENSSDUG00000002934	-	100	100.000	ENSMMOG00000001250	-	100	100.000	Mola_mola
ENSSDUG00000002934	-	94	97.561	ENSMMOG00000007917	rab11bb	100	97.561	Mola_mola
ENSSDUG00000002934	-	99	95.853	ENSMMOG00000001238	-	99	95.853	Mola_mola
ENSSDUG00000002934	-	100	97.706	ENSMODG00000003841	-	100	97.706	Monodelphis_domestica
ENSSDUG00000002934	-	100	97.706	ENSMALG00000022187	rab11bb	100	97.706	Monopterus_albus
ENSSDUG00000002934	-	94	88.889	ENSMLUG00000006677	-	100	88.889	Myotis_lucifugus
ENSSDUG00000002934	-	100	100.000	ENSNBRG00000023885	-	100	100.000	Neolamprologus_brichardi
ENSSDUG00000002934	-	100	97.706	ENSNBRG00000000372	rab11bb	100	97.706	Neolamprologus_brichardi
ENSSDUG00000002934	-	100	97.706	ENSMEUG00000003686	-	100	97.706	Notamacropus_eugenii
ENSSDUG00000002934	-	100	97.706	ENSONIG00000010435	rab11bb	100	97.706	Oreochromis_niloticus
ENSSDUG00000002934	-	100	100.000	ENSONIG00000002544	-	100	100.000	Oreochromis_niloticus
ENSSDUG00000002934	-	52	94.737	ENSOANG00000031567	-	82	94.737	Ornithorhynchus_anatinus
ENSSDUG00000002934	-	100	97.248	ENSORLG00000013938	rab11bb	100	97.248	Oryzias_latipes
ENSSDUG00000002934	-	99	98.157	ENSORLG00000015284	-	72	98.157	Oryzias_latipes
ENSSDUG00000002934	-	100	97.248	ENSORLG00020019393	rab11bb	100	97.248	Oryzias_latipes_hni
ENSSDUG00000002934	-	99	98.157	ENSORLG00020020844	RAB11B	99	98.157	Oryzias_latipes_hni
ENSSDUG00000002934	-	100	97.248	ENSORLG00015020173	rab11bb	100	97.248	Oryzias_latipes_hsok
ENSSDUG00000002934	-	99	98.157	ENSORLG00015016999	RAB11B	99	98.157	Oryzias_latipes_hsok
ENSSDUG00000002934	-	100	99.083	ENSOMEG00000002562	-	100	99.083	Oryzias_melastigma
ENSSDUG00000002934	-	100	97.706	ENSOMEG00000017806	-	100	97.706	Oryzias_melastigma
ENSSDUG00000002934	-	100	96.789	ENSPPAG00000028589	-	100	96.789	Pan_paniscus
ENSSDUG00000002934	-	100	96.789	ENSPTRG00000010422	RAB11B	100	96.789	Pan_troglodytes
ENSSDUG00000002934	-	100	96.789	ENSPANG00000007765	-	100	96.789	Papio_anubis
ENSSDUG00000002934	-	100	97.706	ENSPKIG00000011640	rab11bb	100	97.706	Paramormyrops_kingsleyae
ENSSDUG00000002934	-	98	97.196	ENSPKIG00000001389	-	69	97.196	Paramormyrops_kingsleyae
ENSSDUG00000002934	-	100	97.248	ENSPKIG00000011703	-	100	97.248	Paramormyrops_kingsleyae
ENSSDUG00000002934	-	98	93.607	ENSPSIG00000010242	-	85	93.607	Pelodiscus_sinensis
ENSSDUG00000002934	-	100	97.706	ENSPMGG00000009435	rab11bb	100	97.706	Periophthalmus_magnuspinnatus
ENSSDUG00000002934	-	100	98.165	ENSPMGG00000014333	-	100	98.165	Periophthalmus_magnuspinnatus
ENSSDUG00000002934	-	99	94.470	ENSPMGG00000014336	-	99	94.470	Periophthalmus_magnuspinnatus
ENSSDUG00000002934	-	97	97.170	ENSPCIG00000020371	-	99	97.170	Phascolarctos_cinereus
ENSSDUG00000002934	-	100	97.706	ENSPFOG00000024114	-	100	97.706	Poecilia_formosa
ENSSDUG00000002934	-	100	100.000	ENSPFOG00000006224	-	100	100.000	Poecilia_formosa
ENSSDUG00000002934	-	100	97.706	ENSPLAG00000001598	rab11bb	100	97.706	Poecilia_latipinna
ENSSDUG00000002934	-	100	100.000	ENSPLAG00000014207	-	100	100.000	Poecilia_latipinna
ENSSDUG00000002934	-	100	100.000	ENSPMEG00000007842	-	100	100.000	Poecilia_mexicana
ENSSDUG00000002934	-	100	97.706	ENSPMEG00000012389	rab11bb	100	97.706	Poecilia_mexicana
ENSSDUG00000002934	-	100	97.706	ENSPREG00000014269	rab11bb	100	97.706	Poecilia_reticulata
ENSSDUG00000002934	-	100	99.541	ENSPREG00000006336	-	100	99.541	Poecilia_reticulata
ENSSDUG00000002934	-	100	97.706	ENSPNYG00000004098	rab11bb	100	97.706	Pundamilia_nyererei
ENSSDUG00000002934	-	100	100.000	ENSPNYG00000019611	-	100	100.000	Pundamilia_nyererei
ENSSDUG00000002934	-	100	96.789	ENSRROG00000037812	-	100	96.789	Rhinopithecus_roxellana
ENSSDUG00000002934	-	97	96.698	ENSSHAG00000006816	-	97	96.698	Sarcophilus_harrisii
ENSSDUG00000002934	-	100	73.853	ENSSFOG00015006245	-	100	73.853	Scleropages_formosus
ENSSDUG00000002934	-	100	97.248	ENSSFOG00015009042	rab11bb	100	97.248	Scleropages_formosus
ENSSDUG00000002934	-	100	96.330	ENSSMAG00000018613	-	100	96.330	Scophthalmus_maximus
ENSSDUG00000002934	-	100	97.248	ENSSMAG00000004922	rab11bb	100	97.248	Scophthalmus_maximus
ENSSDUG00000002934	-	100	97.706	ENSSLDG00000020676	rab11bb	100	97.706	Seriola_lalandi_dorsalis
ENSSDUG00000002934	-	100	100.000	ENSSLDG00000005275	-	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000002934	-	100	97.706	ENSSPUG00000002243	-	100	97.706	Sphenodon_punctatus
ENSSDUG00000002934	-	100	100.000	ENSSPAG00000014559	-	100	100.000	Stegastes_partitus
ENSSDUG00000002934	-	100	97.706	ENSSPAG00000011419	rab11bb	100	97.706	Stegastes_partitus
ENSSDUG00000002934	-	100	97.706	ENSTGUG00000000084	-	100	97.706	Taeniopygia_guttata
ENSSDUG00000002934	-	99	99.537	ENSTRUG00000021619	-	100	99.537	Takifugu_rubripes
ENSSDUG00000002934	-	99	95.853	ENSTRUG00000021614	-	99	95.853	Takifugu_rubripes
ENSSDUG00000002934	-	100	97.706	ENSTRUG00000022029	rab11bb	100	97.706	Takifugu_rubripes
ENSSDUG00000002934	-	93	97.044	ENSTNIG00000002003	-	100	97.044	Tetraodon_nigroviridis
ENSSDUG00000002934	-	99	99.537	ENSTNIG00000013182	-	100	99.537	Tetraodon_nigroviridis
ENSSDUG00000002934	-	100	96.789	ENSTNIG00000011081	rab11bb	100	96.789	Tetraodon_nigroviridis
ENSSDUG00000002934	-	99	95.392	ENSTNIG00000013184	-	99	95.392	Tetraodon_nigroviridis
ENSSDUG00000002934	-	94	97.561	ENSUAMG00000006639	-	99	97.561	Ursus_americanus
ENSSDUG00000002934	-	100	96.804	ENSXETG00000025484	rab11b.1	99	96.804	Xenopus_tropicalis
ENSSDUG00000002934	-	100	97.706	ENSXCOG00000008042	-	100	97.706	Xiphophorus_couchianus
ENSSDUG00000002934	-	100	100.000	ENSXCOG00000009190	-	100	100.000	Xiphophorus_couchianus
ENSSDUG00000002934	-	100	97.706	ENSXMAG00000011926	rab11bb	100	97.706	Xiphophorus_maculatus
ENSSDUG00000002934	-	100	99.541	ENSXMAG00000024840	-	100	99.541	Xiphophorus_maculatus