EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000002949 (Gene tree)
Gene ID: 111222489
Gene Symbol: usb1
Alias: zgc:91896
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 3648 bases
Position: chrBDQW01000097.1:201363-205010
Accession: 111222489
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000003989	HVSL	PF09749.9	7.4e-65	1	1
ENSSDUP00000003927	HVSL	PF09749.9	5.7e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000004073	-	810	XM_022746240	ENSSDUP00000003989	269 (aa)	XP_022601961	-
ENSSDUT00000004011	-	450	-	ENSSDUP00000003927	149 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000002949's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000002949's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000002949	usb1	83	54.464	ENSG00000103005	USB1	100	55.140	Homo_sapiens
ENSSDUG00000002949	usb1	100	70.000	ENSAPOG00000011942	usb1	86	74.793	Acanthochromis_polyacanthus
ENSSDUG00000002949	usb1	99	50.362	ENSAMEG00000017205	USB1	84	55.310	Ailuropoda_melanoleuca
ENSSDUG00000002949	usb1	100	73.477	ENSACIG00000012234	usb1	88	76.518	Amphilophus_citrinellus
ENSSDUG00000002949	usb1	99	71.174	ENSAOCG00000014831	usb1	79	82.511	Amphiprion_ocellaris
ENSSDUG00000002949	usb1	99	71.174	ENSAPEG00000000296	usb1	79	82.511	Amphiprion_percula
ENSSDUG00000002949	usb1	99	75.532	ENSATEG00000009348	usb1	79	85.650	Anabas_testudineus
ENSSDUG00000002949	usb1	83	58.222	ENSAPLG00000002756	USB1	99	58.222	Anas_platyrhynchos
ENSSDUG00000002949	usb1	83	53.333	ENSACAG00000015481	USB1	98	53.333	Anolis_carolinensis
ENSSDUG00000002949	usb1	83	54.018	ENSANAG00000035640	USB1	85	54.018	Aotus_nancymaae
ENSSDUG00000002949	usb1	83	79.464	ENSACLG00000020586	usb1	100	69.395	Astatotilapia_calliptera
ENSSDUG00000002949	usb1	83	66.816	ENSAMXG00000040146	usb1	74	66.816	Astyanax_mexicanus
ENSSDUG00000002949	usb1	99	51.103	ENSBTAG00000015758	USB1	85	55.357	Bos_taurus
ENSSDUG00000002949	usb1	83	55.357	ENSCJAG00000011733	USB1	85	55.357	Callithrix_jacchus
ENSSDUG00000002949	usb1	99	50.187	ENSCAFG00000008556	USB1	60	54.667	Canis_familiaris
ENSSDUG00000002949	usb1	99	50.187	ENSCAFG00020009263	USB1	85	54.667	Canis_lupus_dingo
ENSSDUG00000002949	usb1	99	50.373	ENSCHIG00000024290	USB1	85	54.911	Capra_hircus
ENSSDUG00000002949	usb1	91	49.660	ENSTSYG00000006997	USB1	85	53.540	Carlito_syrichta
ENSSDUG00000002949	usb1	83	44.643	ENSCAPG00000009057	USB1	96	44.643	Cavia_aperea
ENSSDUG00000002949	usb1	99	49.275	ENSCPOG00000014325	USB1	83	55.357	Cavia_porcellus
ENSSDUG00000002949	usb1	83	54.911	ENSCCAG00000022132	USB1	85	54.911	Cebus_capucinus
ENSSDUG00000002949	usb1	83	55.357	ENSCATG00000032174	USB1	85	55.357	Cercocebus_atys
ENSSDUG00000002949	usb1	64	54.335	ENSCLAG00000007363	USB1	91	54.375	Chinchilla_lanigera
ENSSDUG00000002949	usb1	83	54.911	ENSCSAG00000004783	USB1	85	54.911	Chlorocebus_sabaeus
ENSSDUG00000002949	usb1	83	59.193	ENSCPBG00000026943	USB1	80	59.193	Chrysemys_picta_bellii
ENSSDUG00000002949	usb1	83	33.043	ENSCING00000011490	-	89	31.356	Ciona_intestinalis
ENSSDUG00000002949	usb1	82	30.837	ENSCSAVG00000000894	-	82	30.837	Ciona_savignyi
ENSSDUG00000002949	usb1	83	55.804	ENSCANG00000037135	USB1	85	55.804	Colobus_angolensis_palliatus
ENSSDUG00000002949	usb1	99	50.549	ENSCGRG00001011243	USB1	84	55.357	Cricetulus_griseus_chok1gshd
ENSSDUG00000002949	usb1	99	50.549	ENSCGRG00000013252	USB1	84	55.357	Cricetulus_griseus_crigri
ENSSDUG00000002949	usb1	99	68.327	ENSCSEG00000013881	usb1	81	76.682	Cynoglossus_semilaevis
ENSSDUG00000002949	usb1	84	75.325	ENSCVAG00000009252	usb1	99	75.325	Cyprinodon_variegatus
ENSSDUG00000002949	usb1	84	61.674	ENSDARG00000003841	usb1	81	62.500	Danio_rerio
ENSSDUG00000002949	usb1	83	53.571	ENSDORG00000001888	Usb1	85	53.571	Dipodomys_ordii
ENSSDUG00000002949	usb1	78	39.720	FBgn0037713	CG16790	97	36.220	Drosophila_melanogaster
ENSSDUG00000002949	usb1	99	43.284	ENSETEG00000019682	USB1	85	46.018	Echinops_telfairi
ENSSDUG00000002949	usb1	82	48.214	ENSEBUG00000005889	usb1	78	48.214	Eptatretus_burgeri
ENSSDUG00000002949	usb1	99	50.368	ENSEASG00005005484	USB1	85	54.867	Equus_asinus_asinus
ENSSDUG00000002949	usb1	99	50.554	ENSECAG00000019493	USB1	78	55.111	Equus_caballus
ENSSDUG00000002949	usb1	64	50.289	ENSEEUG00000000154	USB1	60	49.375	Erinaceus_europaeus
ENSSDUG00000002949	usb1	83	65.625	ENSELUG00000010974	usb1	82	65.625	Esox_lucius
ENSSDUG00000002949	usb1	99	49.635	ENSFCAG00000002693	USB1	85	53.982	Felis_catus
ENSSDUG00000002949	usb1	83	57.848	ENSFALG00000006876	USB1	83	57.848	Ficedula_albicollis
ENSSDUG00000002949	usb1	99	50.373	ENSFDAG00000010052	USB1	84	54.911	Fukomys_damarensis
ENSSDUG00000002949	usb1	87	66.529	ENSFHEG00000012334	usb1	97	67.769	Fundulus_heteroclitus
ENSSDUG00000002949	usb1	83	71.749	ENSGMOG00000004228	usb1	100	71.749	Gadus_morhua
ENSSDUG00000002949	usb1	82	58.296	ENSGALG00000035604	USB1	89	58.407	Gallus_gallus
ENSSDUG00000002949	usb1	100	69.534	ENSGAFG00000021890	usb1	81	79.111	Gambusia_affinis
ENSSDUG00000002949	usb1	83	83.408	ENSGACG00000003257	usb1	81	83.408	Gasterosteus_aculeatus
ENSSDUG00000002949	usb1	99	55.515	ENSGAGG00000022572	USB1	82	59.193	Gopherus_agassizii
ENSSDUG00000002949	usb1	83	54.911	ENSGGOG00000017147	USB1	85	54.911	Gorilla_gorilla
ENSSDUG00000002949	usb1	83	80.357	ENSHBUG00000009823	usb1	80	80.357	Haplochromis_burtoni
ENSSDUG00000002949	usb1	99	50.562	ENSHGLG00000016078	USB1	82	55.157	Heterocephalus_glaber_female
ENSSDUG00000002949	usb1	99	50.562	ENSHGLG00100005562	USB1	82	55.157	Heterocephalus_glaber_male
ENSSDUG00000002949	usb1	81	74.312	ENSHCOG00000015633	usb1	90	73.276	Hippocampus_comes
ENSSDUG00000002949	usb1	99	55.709	ENSIPUG00000008601	usb1	78	64.000	Ictalurus_punctatus
ENSSDUG00000002949	usb1	84	55.310	ENSSTOG00000007548	USB1	83	55.310	Ictidomys_tridecemlineatus
ENSSDUG00000002949	usb1	99	51.103	ENSJJAG00000021859	Usb1	85	55.310	Jaculus_jaculus
ENSSDUG00000002949	usb1	83	80.269	ENSKMAG00000007200	usb1	79	80.269	Kryptolebias_marmoratus
ENSSDUG00000002949	usb1	81	77.880	ENSLBEG00000008452	usb1	68	77.880	Labrus_bergylta
ENSSDUG00000002949	usb1	72	57.436	ENSLACG00000000105	USB1	67	58.462	Latimeria_chalumnae
ENSSDUG00000002949	usb1	83	58.482	ENSLOCG00000000465	usb1	79	58.482	Lepisosteus_oculatus
ENSSDUG00000002949	usb1	99	42.545	ENSLAFG00000002267	USB1	84	44.978	Loxodonta_africana
ENSSDUG00000002949	usb1	83	55.357	ENSMFAG00000003926	USB1	85	55.357	Macaca_fascicularis
ENSSDUG00000002949	usb1	83	55.357	ENSMMUG00000022669	USB1	85	55.357	Macaca_mulatta
ENSSDUG00000002949	usb1	83	54.911	ENSMNEG00000042487	USB1	85	54.911	Macaca_nemestrina
ENSSDUG00000002949	usb1	83	55.357	ENSMLEG00000028756	USB1	85	55.357	Mandrillus_leucophaeus
ENSSDUG00000002949	usb1	99	75.532	ENSMAMG00000015092	usb1	99	75.532	Mastacembelus_armatus
ENSSDUG00000002949	usb1	83	79.464	ENSMZEG00005010008	usb1	80	79.464	Maylandia_zebra
ENSSDUG00000002949	usb1	99	50.000	ENSMAUG00000007832	Usb1	84	54.464	Mesocricetus_auratus
ENSSDUG00000002949	usb1	84	55.310	ENSMICG00000004900	USB1	85	55.310	Microcebus_murinus
ENSSDUG00000002949	usb1	99	50.365	ENSMOCG00000022647	Usb1	84	55.357	Microtus_ochrogaster
ENSSDUG00000002949	usb1	99	73.134	ENSMMOG00000000490	usb1	99	71.691	Mola_mola
ENSSDUG00000002949	usb1	80	53.456	ENSMODG00000014067	USB1	84	53.571	Monodelphis_domestica
ENSSDUG00000002949	usb1	99	73.498	ENSMALG00000005930	usb1	79	83.929	Monopterus_albus
ENSSDUG00000002949	usb1	99	49.638	MGP_CAROLIEiJ_G0031421	Usb1	99	51.786	Mus_caroli
ENSSDUG00000002949	usb1	99	49.638	ENSMUSG00000031792	Usb1	99	51.786	Mus_musculus
ENSSDUG00000002949	usb1	99	49.638	MGP_PahariEiJ_G0023019	Usb1	100	52.991	Mus_pahari
ENSSDUG00000002949	usb1	99	49.638	MGP_SPRETEiJ_G0032540	Usb1	85	54.867	Mus_spretus
ENSSDUG00000002949	usb1	99	48.571	ENSMPUG00000004684	USB1	81	53.982	Mustela_putorius_furo
ENSSDUG00000002949	usb1	84	55.752	ENSMLUG00000007400	USB1	98	55.752	Myotis_lucifugus
ENSSDUG00000002949	usb1	99	52.239	ENSNGAG00000009703	Usb1	84	56.195	Nannospalax_galili
ENSSDUG00000002949	usb1	84	71.930	ENSNBRG00000008747	usb1	100	75.701	Neolamprologus_brichardi
ENSSDUG00000002949	usb1	76	56.098	ENSNLEG00000003340	USB1	82	56.098	Nomascus_leucogenys
ENSSDUG00000002949	usb1	70	48.571	ENSMEUG00000003328	-	72	49.091	Notamacropus_eugenii
ENSSDUG00000002949	usb1	73	53.211	ENSOPRG00000011803	USB1	54	52.381	Ochotona_princeps
ENSSDUG00000002949	usb1	99	50.185	ENSODEG00000016214	USB1	83	55.605	Octodon_degus
ENSSDUG00000002949	usb1	99	71.583	ENSONIG00000011063	usb1	80	81.166	Oreochromis_niloticus
ENSSDUG00000002949	usb1	83	55.111	ENSOANG00000012118	USB1	94	55.111	Ornithorhynchus_anatinus
ENSSDUG00000002949	usb1	85	79.039	ENSORLG00000012479	usb1	84	79.039	Oryzias_latipes
ENSSDUG00000002949	usb1	85	78.166	ENSORLG00020018671	usb1	85	78.166	Oryzias_latipes_hni
ENSSDUG00000002949	usb1	85	79.476	ENSORLG00015009679	usb1	85	79.476	Oryzias_latipes_hsok
ENSSDUG00000002949	usb1	99	70.909	ENSOMEG00000012930	usb1	99	70.909	Oryzias_melastigma
ENSSDUG00000002949	usb1	84	51.770	ENSOGAG00000003273	USB1	84	51.770	Otolemur_garnettii
ENSSDUG00000002949	usb1	83	55.357	ENSOARG00000001107	USB1	86	55.357	Ovis_aries
ENSSDUG00000002949	usb1	83	54.464	ENSPPAG00000042137	USB1	85	54.464	Pan_paniscus
ENSSDUG00000002949	usb1	99	50.365	ENSPPRG00000024797	USB1	85	53.540	Panthera_pardus
ENSSDUG00000002949	usb1	99	48.905	ENSPTIG00000007506	USB1	85	53.097	Panthera_tigris_altaica
ENSSDUG00000002949	usb1	79	55.607	ENSPTRG00000008172	USB1	100	55.607	Pan_troglodytes
ENSSDUG00000002949	usb1	83	55.357	ENSPANG00000025138	USB1	85	55.357	Papio_anubis
ENSSDUG00000002949	usb1	83	64.126	ENSPKIG00000015109	usb1	75	64.126	Paramormyrops_kingsleyae
ENSSDUG00000002949	usb1	83	47.807	ENSPSIG00000004305	USB1	100	47.807	Pelodiscus_sinensis
ENSSDUG00000002949	usb1	84	70.796	ENSPMGG00000017725	usb1	87	70.796	Periophthalmus_magnuspinnatus
ENSSDUG00000002949	usb1	99	46.975	ENSPEMG00000016183	Usb1	82	54.018	Peromyscus_maniculatus_bairdii
ENSSDUG00000002949	usb1	83	52.000	ENSPMAG00000000462	usb1	95	52.000	Petromyzon_marinus
ENSSDUG00000002949	usb1	100	70.036	ENSPFOG00000011130	usb1	81	79.556	Poecilia_formosa
ENSSDUG00000002949	usb1	100	69.675	ENSPLAG00000009820	usb1	81	79.111	Poecilia_latipinna
ENSSDUG00000002949	usb1	100	70.357	ENSPMEG00000006402	usb1	81	79.556	Poecilia_mexicana
ENSSDUG00000002949	usb1	87	68.595	ENSPREG00000001047	usb1	77	81.579	Poecilia_reticulata
ENSSDUG00000002949	usb1	76	52.913	ENSPPYG00000007401	USB1	82	52.913	Pongo_abelii
ENSSDUG00000002949	usb1	92	49.664	ENSPCOG00000022612	USB1	85	54.425	Propithecus_coquereli
ENSSDUG00000002949	usb1	99	48.529	ENSPVAG00000004613	USB1	86	53.571	Pteropus_vampyrus
ENSSDUG00000002949	usb1	100	70.714	ENSPNYG00000022262	usb1	80	80.357	Pundamilia_nyererei
ENSSDUG00000002949	usb1	83	66.518	ENSPNAG00000011736	usb1	76	66.518	Pygocentrus_nattereri
ENSSDUG00000002949	usb1	99	49.638	ENSRNOG00000013216	Usb1	85	54.425	Rattus_norvegicus
ENSSDUG00000002949	usb1	87	49.618	ENSRBIG00000044466	USB1	100	56.075	Rhinopithecus_bieti
ENSSDUG00000002949	usb1	83	55.357	ENSRROG00000029211	USB1	85	55.357	Rhinopithecus_roxellana
ENSSDUG00000002949	usb1	83	55.357	ENSSBOG00000029362	USB1	85	55.357	Saimiri_boliviensis_boliviensis
ENSSDUG00000002949	usb1	81	51.835	ENSSHAG00000006993	USB1	89	52.679	Sarcophilus_harrisii
ENSSDUG00000002949	usb1	84	66.667	ENSSFOG00015023663	usb1	71	66.667	Scleropages_formosus
ENSSDUG00000002949	usb1	100	73.913	ENSSMAG00000015834	usb1	100	73.244	Scophthalmus_maximus
ENSSDUG00000002949	usb1	100	88.380	ENSSLDG00000014174	usb1	100	88.571	Seriola_lalandi_dorsalis
ENSSDUG00000002949	usb1	79	55.607	ENSSPUG00000006741	USB1	100	55.607	Sphenodon_punctatus
ENSSDUG00000002949	usb1	99	69.825	ENSSPAG00000007484	usb1	79	81.696	Stegastes_partitus
ENSSDUG00000002949	usb1	99	49.638	ENSSSCG00000002807	USB1	84	54.867	Sus_scrofa
ENSSDUG00000002949	usb1	78	59.242	ENSTGUG00000004792	USB1	86	57.919	Taeniopygia_guttata
ENSSDUG00000002949	usb1	99	69.030	ENSTRUG00000021069	usb1	83	77.578	Takifugu_rubripes
ENSSDUG00000002949	usb1	99	63.197	ENSTNIG00000000626	usb1	91	65.289	Tetraodon_nigroviridis
ENSSDUG00000002949	usb1	83	38.393	ENSTBEG00000001507	USB1	97	38.393	Tupaia_belangeri
ENSSDUG00000002949	usb1	99	50.362	ENSUAMG00000016823	USB1	84	55.310	Ursus_americanus
ENSSDUG00000002949	usb1	79	55.607	ENSUMAG00000021369	USB1	100	55.607	Ursus_maritimus
ENSSDUG00000002949	usb1	99	50.373	ENSVVUG00000023700	USB1	87	54.667	Vulpes_vulpes
ENSSDUG00000002949	usb1	88	55.303	ENSXETG00000013795	usb1	89	56.054	Xenopus_tropicalis
ENSSDUG00000002949	usb1	83	80.444	ENSXMAG00000024687	usb1	81	70.204	Xiphophorus_maculatus