EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000002959 (Gene tree)
Gene ID: 111237288
Gene Symbol: shrprbck1r
Alias: sipl1-rbck1|zgc:175152
Full Name: ranBP-type and C3HC4-type zinc finger-containing protein 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 9765 bases
Position: chrBDQW01000822.1:382972-392736
Accession: 111237288
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000003967	zf-RanBP	PF00641.18	2.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000004052	-	2118	XM_022766325	ENSSDUP00000003967	705 (aa)	XP_022622046	-

Gene Model

Click here to download ENSSDUG00000002959's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu04217	Necroptosis	KEGG
sdu04621	NOD-like receptor signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000002959's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000002959	shrprbck1r	76	45.856	ENSSDUG00000023631	rbck1	99	45.138
ENSSDUG00000002959	shrprbck1r	60	45.727	ENSSDUG00000019039	sharpin	96	44.804

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000002959	shrprbck1r	59	59.491	ENSAPOG00000023352	sharpin	95	58.565	Acanthochromis_polyacanthus
ENSSDUG00000002959	shrprbck1r	100	87.570	ENSAPOG00000022737	shrprbck1r	100	87.011	Acanthochromis_polyacanthus
ENSSDUG00000002959	shrprbck1r	100	85.513	ENSACIG00000002184	shrprbck1r	100	85.513	Amphilophus_citrinellus
ENSSDUG00000002959	shrprbck1r	59	59.722	ENSAOCG00000017464	sharpin	95	58.796	Amphiprion_ocellaris
ENSSDUG00000002959	shrprbck1r	100	90.182	ENSAOCG00000002890	shrprbck1r	100	89.762	Amphiprion_ocellaris
ENSSDUG00000002959	shrprbck1r	100	87.518	ENSAPEG00000023274	shrprbck1r	100	86.816	Amphiprion_percula
ENSSDUG00000002959	shrprbck1r	59	59.722	ENSAPEG00000004049	sharpin	95	58.796	Amphiprion_percula
ENSSDUG00000002959	shrprbck1r	60	59.861	ENSATEG00000007832	sharpin	88	58.933	Anabas_testudineus
ENSSDUG00000002959	shrprbck1r	100	86.601	ENSATEG00000014561	shrprbck1r	100	86.601	Anabas_testudineus
ENSSDUG00000002959	shrprbck1r	100	85.935	ENSACLG00000022609	shrprbck1r	100	85.935	Astatotilapia_calliptera
ENSSDUG00000002959	shrprbck1r	100	70.708	ENSAMXG00000021016	shrprbck1r	100	70.572	Astyanax_mexicanus
ENSSDUG00000002959	shrprbck1r	54	57.623	ENSAMXG00000006229	sharpin	97	57.254	Astyanax_mexicanus
ENSSDUG00000002959	shrprbck1r	100	81.215	ENSCSEG00000011306	shrprbck1r	100	81.215	Cynoglossus_semilaevis
ENSSDUG00000002959	shrprbck1r	100	81.831	ENSCVAG00000007250	shrprbck1r	100	81.408	Cyprinodon_variegatus
ENSSDUG00000002959	shrprbck1r	65	53.571	ENSCVAG00000006586	sharpin	99	52.311	Cyprinodon_variegatus
ENSSDUG00000002959	shrprbck1r	100	71.862	ENSDARG00000059871	shrprbck1r	100	72.276	Danio_rerio
ENSSDUG00000002959	shrprbck1r	54	55.897	ENSDARG00000076995	sharpin	94	55.897	Danio_rerio
ENSSDUG00000002959	shrprbck1r	100	76.676	ENSELUG00000016022	shrprbck1r	100	76.503	Esox_lucius
ENSSDUG00000002959	shrprbck1r	59	56.621	ENSFHEG00000013564	sharpin	94	55.479	Fundulus_heteroclitus
ENSSDUG00000002959	shrprbck1r	53	62.727	ENSGMOG00000010123	sharpin	93	62.727	Gadus_morhua
ENSSDUG00000002959	shrprbck1r	100	81.268	ENSGAFG00000009309	shrprbck1r	100	80.845	Gambusia_affinis
ENSSDUG00000002959	shrprbck1r	59	44.316	ENSGAFG00000021405	sharpin	95	43.357	Gambusia_affinis
ENSSDUG00000002959	shrprbck1r	75	84.280	ENSGACG00000002544	shrprbck1r	100	84.280	Gasterosteus_aculeatus
ENSSDUG00000002959	shrprbck1r	100	85.935	ENSHBUG00000021933	shrprbck1r	100	85.935	Haplochromis_burtoni
ENSSDUG00000002959	shrprbck1r	60	54.481	ENSHCOG00000018847	sharpin	80	54.225	Hippocampus_comes
ENSSDUG00000002959	shrprbck1r	96	70.014	ENSIPUG00000014247	shrprbck1r	100	67.720	Ictalurus_punctatus
ENSSDUG00000002959	shrprbck1r	54	57.545	ENSIPUG00000011951	sharpin	96	75.758	Ictalurus_punctatus
ENSSDUG00000002959	shrprbck1r	100	80.828	ENSKMAG00000015215	shrprbck1r	100	80.609	Kryptolebias_marmoratus
ENSSDUG00000002959	shrprbck1r	59	58.102	ENSKMAG00000015204	sharpin	76	57.176	Kryptolebias_marmoratus
ENSSDUG00000002959	shrprbck1r	100	88.451	ENSLBEG00000016876	shrprbck1r	100	88.451	Labrus_bergylta
ENSSDUG00000002959	shrprbck1r	60	59.217	ENSLBEG00000016624	sharpin	96	58.295	Labrus_bergylta
ENSSDUG00000002959	shrprbck1r	95	52.984	ENSLACG00000010948	-	97	52.984	Latimeria_chalumnae
ENSSDUG00000002959	shrprbck1r	100	69.295	ENSLOCG00000008910	shrprbck1r	100	69.890	Lepisosteus_oculatus
ENSSDUG00000002959	shrprbck1r	55	70.968	ENSMAMG00000014645	sharpin	92	70.968	Mastacembelus_armatus
ENSSDUG00000002959	shrprbck1r	100	87.394	ENSMAMG00000022930	shrprbck1r	100	87.394	Mastacembelus_armatus
ENSSDUG00000002959	shrprbck1r	100	85.795	ENSMZEG00005021257	shrprbck1r	100	85.795	Maylandia_zebra
ENSSDUG00000002959	shrprbck1r	100	82.263	ENSMMOG00000003764	shrprbck1r	100	82.263	Mola_mola
ENSSDUG00000002959	shrprbck1r	96	86.892	ENSMALG00000008861	shrprbck1r	95	86.892	Monopterus_albus
ENSSDUG00000002959	shrprbck1r	50	70.968	ENSMALG00000020528	sharpin	93	70.968	Monopterus_albus
ENSSDUG00000002959	shrprbck1r	100	86.498	ENSNBRG00000002270	shrprbck1r	100	86.498	Neolamprologus_brichardi
ENSSDUG00000002959	shrprbck1r	54	57.143	ENSONIG00000009626	-	97	55.911	Oreochromis_niloticus
ENSSDUG00000002959	shrprbck1r	100	85.654	ENSONIG00000014401	shrprbck1r	100	85.654	Oreochromis_niloticus
ENSSDUG00000002959	shrprbck1r	100	82.394	ENSORLG00000007392	shrprbck1r	100	81.690	Oryzias_latipes
ENSSDUG00000002959	shrprbck1r	59	56.720	ENSORLG00000017281	sharpin	95	55.581	Oryzias_latipes
ENSSDUG00000002959	shrprbck1r	59	56.849	ENSORLG00020000801	sharpin	95	55.708	Oryzias_latipes_hni
ENSSDUG00000002959	shrprbck1r	100	81.831	ENSORLG00020018619	shrprbck1r	100	81.127	Oryzias_latipes_hni
ENSSDUG00000002959	shrprbck1r	100	81.549	ENSORLG00015018865	shrprbck1r	100	81.408	Oryzias_latipes_hsok
ENSSDUG00000002959	shrprbck1r	59	56.849	ENSORLG00015009860	sharpin	95	55.708	Oryzias_latipes_hsok
ENSSDUG00000002959	shrprbck1r	55	76.923	ENSOMEG00000005729	sharpin	85	76.923	Oryzias_melastigma
ENSSDUG00000002959	shrprbck1r	100	82.817	ENSOMEG00000012749	shrprbck1r	100	82.113	Oryzias_melastigma
ENSSDUG00000002959	shrprbck1r	100	72.385	ENSPKIG00000006933	shrprbck1r	100	72.803	Paramormyrops_kingsleyae
ENSSDUG00000002959	shrprbck1r	65	61.359	ENSPKIG00000018308	-	96	60.934	Paramormyrops_kingsleyae
ENSSDUG00000002959	shrprbck1r	100	78.310	ENSPMGG00000013254	shrprbck1r	100	78.310	Periophthalmus_magnuspinnatus
ENSSDUG00000002959	shrprbck1r	59	55.000	ENSPFOG00000015253	sharpin	95	53.881	Poecilia_formosa
ENSSDUG00000002959	shrprbck1r	100	82.535	ENSPFOG00000004214	shrprbck1r	100	82.254	Poecilia_formosa
ENSSDUG00000002959	shrprbck1r	100	82.394	ENSPLAG00000020523	shrprbck1r	100	82.113	Poecilia_latipinna
ENSSDUG00000002959	shrprbck1r	59	55.227	ENSPLAG00000000423	sharpin	95	54.110	Poecilia_latipinna
ENSSDUG00000002959	shrprbck1r	51	51.145	ENSPMEG00000023030	sharpin	89	51.145	Poecilia_mexicana
ENSSDUG00000002959	shrprbck1r	100	81.100	ENSPMEG00000006877	shrprbck1r	100	80.818	Poecilia_mexicana
ENSSDUG00000002959	shrprbck1r	100	79.437	ENSPREG00000014689	shrprbck1r	100	79.155	Poecilia_reticulata
ENSSDUG00000002959	shrprbck1r	65	52.599	ENSPREG00000009702	sharpin	99	51.566	Poecilia_reticulata
ENSSDUG00000002959	shrprbck1r	100	86.357	ENSPNYG00000022601	shrprbck1r	100	86.357	Pundamilia_nyererei
ENSSDUG00000002959	shrprbck1r	54	56.848	ENSPNAG00000002911	sharpin	99	56.959	Pygocentrus_nattereri
ENSSDUG00000002959	shrprbck1r	100	70.742	ENSPNAG00000007847	shrprbck1r	100	70.588	Pygocentrus_nattereri
ENSSDUG00000002959	shrprbck1r	59	68.750	ENSSFOG00015004028	sharpin	99	55.645	Scleropages_formosus
ENSSDUG00000002959	shrprbck1r	75	65.348	ENSSFOG00015014150	-	96	65.038	Scleropages_formosus
ENSSDUG00000002959	shrprbck1r	100	85.455	ENSSMAG00000018085	shrprbck1r	100	85.455	Scophthalmus_maximus
ENSSDUG00000002959	shrprbck1r	100	98.307	ENSSLDG00000009026	shrprbck1r	100	98.307	Seriola_lalandi_dorsalis
ENSSDUG00000002959	shrprbck1r	96	86.502	ENSSPAG00000016097	shrprbck1r	99	86.067	Stegastes_partitus
ENSSDUG00000002959	shrprbck1r	59	55.213	ENSTRUG00000011046	sharpin	96	54.739	Takifugu_rubripes
ENSSDUG00000002959	shrprbck1r	100	81.435	ENSTRUG00000006949	shrprbck1r	100	81.435	Takifugu_rubripes
ENSSDUG00000002959	shrprbck1r	54	58.040	ENSTNIG00000008521	sharpin	94	57.286	Tetraodon_nigroviridis
ENSSDUG00000002959	shrprbck1r	100	78.732	ENSXCOG00000006701	shrprbck1r	100	78.451	Xiphophorus_couchianus
ENSSDUG00000002959	shrprbck1r	59	44.804	ENSXCOG00000015019	sharpin	96	44.573	Xiphophorus_couchianus
ENSSDUG00000002959	shrprbck1r	100	78.873	ENSXMAG00000018972	shrprbck1r	100	78.592	Xiphophorus_maculatus
ENSSDUG00000002959	shrprbck1r	65	53.333	ENSXMAG00000022076	sharpin	99	52.301	Xiphophorus_maculatus