EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000002965 (Gene tree)
Gene ID: 111231923
Gene Symbol: rab11ba
Alias: rab11b|wu:fb07g11|zgc:55760
Full Name: ras-related protein Rab-11B-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 5445 bases
Position: chrBDQW01000321.1:4189549-4194993
Accession: 111231923
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000003978	MMR_HSR1	PF01926.23	3.2e-07	1	1
ENSSDUP00000003950	MMR_HSR1	PF01926.23	4.3e-07	1	1
ENSSDUP00000003961	MMR_HSR1	PF01926.23	4.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000004062	-	1771	XM_022759200	ENSSDUP00000003978	218 (aa)	XP_022614921	UPI0004448445
ENSSDUT00000004034	-	753	-	ENSSDUP00000003950	250 (aa)	-	-
ENSSDUT00000004045	-	1037	-	ENSSDUP00000003961	214 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000002965's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu04144	Endocytosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000002965's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000002965	rab11ba	78	51.462	ENSSDUG00000016888	rab1ab	86	44.724
ENSSDUG00000002965	rab11ba	76	30.675	ENSSDUG00000016858	-	89	31.098
ENSSDUG00000002965	rab11ba	100	96.330	ENSSDUG00000002934	-	100	96.330
ENSSDUG00000002965	rab11ba	71	34.839	ENSSDUG00000017779	kras	87	35.928
ENSSDUG00000002965	rab11ba	73	36.943	ENSSDUG00000018970	RAB6B	74	37.580
ENSSDUG00000002965	rab11ba	70	35.333	ENSSDUG00000019086	hrasb	85	36.420
ENSSDUG00000002965	rab11ba	77	52.695	ENSSDUG00000013050	-	78	52.695
ENSSDUG00000002965	rab11ba	73	33.544	ENSSDUG00000010675	si:ch73-116o1.2	78	35.294
ENSSDUG00000002965	rab11ba	96	39.524	ENSSDUG00000013325	rab30	97	39.524
ENSSDUG00000002965	rab11ba	72	33.125	ENSSDUG00000006543	RAB29	80	33.540
ENSSDUG00000002965	rab11ba	89	43.523	ENSSDUG00000006307	-	92	43.523
ENSSDUG00000002965	rab11ba	74	32.075	ENSSDUG00000009122	rheb	86	32.500
ENSSDUG00000002965	rab11ba	78	52.663	ENSSDUG00000022535	RAB1A	83	52.976
ENSSDUG00000002965	rab11ba	75	32.530	ENSSDUG00000014082	si:cabz01085950.1	82	32.934
ENSSDUG00000002965	rab11ba	96	61.951	ENSSDUG00000006260	rab25b	90	70.286
ENSSDUG00000002965	rab11ba	72	39.752	ENSSDUG00000003386	rab9a	82	38.323
ENSSDUG00000002965	rab11ba	83	35.912	ENSSDUG00000005037	-	82	37.017
ENSSDUG00000002965	rab11ba	74	38.650	ENSSDUG00000008011	-	78	39.877
ENSSDUG00000002965	rab11ba	78	36.527	ENSSDUG00000014765	rabl2	72	36.905
ENSSDUG00000002965	rab11ba	77	52.381	ENSSDUG00000004445	zgc:171927	79	52.381
ENSSDUG00000002965	rab11ba	83	42.458	ENSSDUG00000011851	rab42a	84	42.077
ENSSDUG00000002965	rab11ba	74	42.593	ENSSDUG00000004633	RAB15	76	42.593
ENSSDUG00000002965	rab11ba	100	94.954	ENSSDUG00000013558	rab11bb	100	94.954
ENSSDUG00000002965	rab11ba	80	44.253	ENSSDUG00000005719	si:dkey-16l2.16	98	39.713
ENSSDUG00000002965	rab11ba	76	43.373	ENSSDUG00000005627	rab15	78	43.373
ENSSDUG00000002965	rab11ba	75	38.554	ENSSDUG00000013968	rab33a	70	38.922
ENSSDUG00000002965	rab11ba	74	30.061	ENSSDUG00000007311	rhebl1	88	30.061
ENSSDUG00000002965	rab11ba	99	63.636	ENSSDUG00000009735	rab25a	99	63.636
ENSSDUG00000002965	rab11ba	75	47.826	ENSSDUG00000023008	rab5c	73	48.447
ENSSDUG00000002965	rab11ba	79	43.787	ENSSDUG00000003823	rab18a	82	43.787
ENSSDUG00000002965	rab11ba	53	30.252	ENSSDUG00000012868	arl4cb	60	30.252
ENSSDUG00000002965	rab11ba	75	31.395	ENSSDUG00000015078	rasl11a	68	31.638
ENSSDUG00000002965	rab11ba	78	41.667	ENSSDUG00000006618	RAB17	74	42.012
ENSSDUG00000002965	rab11ba	75	41.975	ENSSDUG00000008505	rab12	84	37.037
ENSSDUG00000002965	rab11ba	75	42.236	ENSSDUG00000017131	rab22a	83	42.857
ENSSDUG00000002965	rab11ba	80	39.773	ENSSDUG00000007575	rab9b	85	40.909
ENSSDUG00000002965	rab11ba	84	32.787	ENSSDUG00000021882	rab6ba	88	33.333
ENSSDUG00000002965	rab11ba	99	83.871	ENSSDUG00000006278	rab11al	99	83.871
ENSSDUG00000002965	rab11ba	79	44.706	ENSSDUG00000005960	rab18b	83	45.614
ENSSDUG00000002965	rab11ba	76	49.398	ENSSDUG00000004950	rab35b	82	49.398
ENSSDUG00000002965	rab11ba	80	52.299	ENSSDUG00000004551	rab14	81	52.299
ENSSDUG00000002965	rab11ba	67	40.816	ENSSDUG00000001791	rab33ba	61	40.816
ENSSDUG00000002965	rab11ba	89	31.579	ENSSDUG00000023508	rab23	96	31.579
ENSSDUG00000002965	rab11ba	79	38.953	ENSSDUG00000008151	zgc:101559	74	39.306
ENSSDUG00000002965	rab11ba	76	30.460	ENSSDUG00000022959	rasl11b	69	30.857
ENSSDUG00000002965	rab11ba	85	50.270	ENSSDUG00000004698	rab1ba	90	50.270
ENSSDUG00000002965	rab11ba	72	30.612	ENSSDUG00000016760	rab34b	61	30.612
ENSSDUG00000002965	rab11ba	73	36.306	ENSSDUG00000013496	-	75	36.943
ENSSDUG00000002965	rab11ba	89	50.256	ENSSDUG00000013724	rab2a	96	50.256
ENSSDUG00000002965	rab11ba	100	86.697	ENSSDUG00000002580	rab11a	100	86.697
ENSSDUG00000002965	rab11ba	95	41.667	ENSSDUG00000009835	rab5aa	89	42.157
ENSSDUG00000002965	rab11ba	80	46.821	ENSSDUG00000014091	-	82	46.857
ENSSDUG00000002965	rab11ba	67	42.000	ENSSDUG00000019885	-	62	42.667
ENSSDUG00000002965	rab11ba	73	35.032	ENSSDUG00000009251	rab6bb	75	35.669
ENSSDUG00000002965	rab11ba	79	34.066	ENSSDUG00000010942	rab34a	68	34.426
ENSSDUG00000002965	rab11ba	71	34.375	ENSSDUG00000019738	si:dkey-13a21.4	78	34.375

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000002965	rab11ba	100	94.954	ENSG00000185236	RAB11B	100	97.826	Homo_sapiens
ENSSDUG00000002965	rab11ba	99	94.064	ENSAMEG00000004955	RAB11B	99	94.064	Ailuropoda_melanoleuca
ENSSDUG00000002965	rab11ba	78	98.235	ENSACIG00000024374	rab11ba	70	98.235	Amphilophus_citrinellus
ENSSDUG00000002965	rab11ba	100	97.706	ENSAOCG00000018050	rab11ba	100	97.706	Amphiprion_ocellaris
ENSSDUG00000002965	rab11ba	100	97.248	ENSAPEG00000009177	rab11ba	100	97.248	Amphiprion_percula
ENSSDUG00000002965	rab11ba	100	99.541	ENSATEG00000023730	rab11ba	100	99.541	Anabas_testudineus
ENSSDUG00000002965	rab11ba	100	94.954	ENSANAG00000037616	RAB11B	100	94.954	Aotus_nancymaae
ENSSDUG00000002965	rab11ba	100	97.248	ENSACLG00000005420	rab11ba	100	97.248	Astatotilapia_calliptera
ENSSDUG00000002965	rab11ba	93	89.163	ENSACLG00000018852	-	92	89.163	Astatotilapia_calliptera
ENSSDUG00000002965	rab11ba	99	78.802	WBGene00004274	rab-11.1	99	78.802	Caenorhabditis_elegans
ENSSDUG00000002965	rab11ba	100	94.954	ENSCJAG00000010778	RAB11B	100	94.954	Callithrix_jacchus
ENSSDUG00000002965	rab11ba	100	94.954	ENSCAFG00000032060	RAB11B	100	94.954	Canis_familiaris
ENSSDUG00000002965	rab11ba	100	94.954	ENSCAFG00020022184	RAB11B	100	94.954	Canis_lupus_dingo
ENSSDUG00000002965	rab11ba	100	94.954	ENSTSYG00000014758	RAB11B	100	94.954	Carlito_syrichta
ENSSDUG00000002965	rab11ba	100	94.495	ENSCPOG00000030154	RAB11B	100	94.495	Cavia_porcellus
ENSSDUG00000002965	rab11ba	100	94.954	ENSCCAG00000031042	RAB11B	100	94.954	Cebus_capucinus
ENSSDUG00000002965	rab11ba	100	94.954	ENSCLAG00000003207	RAB11B	100	94.954	Chinchilla_lanigera
ENSSDUG00000002965	rab11ba	100	94.954	ENSCSAG00000008024	RAB11B	100	94.954	Chlorocebus_sabaeus
ENSSDUG00000002965	rab11ba	100	80.734	ENSCHOG00000013525	RAB11B	100	80.734	Choloepus_hoffmanni
ENSSDUG00000002965	rab11ba	100	82.569	ENSCING00000009526	-	100	82.569	Ciona_intestinalis
ENSSDUG00000002965	rab11ba	100	94.954	ENSCANG00000040517	RAB11B	100	94.954	Colobus_angolensis_palliatus
ENSSDUG00000002965	rab11ba	100	94.954	ENSCGRG00001013827	Rab11b	100	94.954	Cricetulus_griseus_chok1gshd
ENSSDUG00000002965	rab11ba	100	94.954	ENSCGRG00000010967	Rab11b	100	94.954	Cricetulus_griseus_crigri
ENSSDUG00000002965	rab11ba	100	97.248	ENSCSEG00000007121	rab11ba	84	98.148	Cynoglossus_semilaevis
ENSSDUG00000002965	rab11ba	100	94.037	ENSDARG00000041878	rab11ba	100	94.037	Danio_rerio
ENSSDUG00000002965	rab11ba	100	94.954	ENSDNOG00000014618	RAB11B	97	94.954	Dasypus_novemcinctus
ENSSDUG00000002965	rab11ba	100	93.119	ENSDNOG00000004134	-	100	93.119	Dasypus_novemcinctus
ENSSDUG00000002965	rab11ba	100	94.954	ENSDORG00000006304	Rab11b	100	94.954	Dipodomys_ordii
ENSSDUG00000002965	rab11ba	100	80.734	ENSEBUG00000015447	-	100	80.734	Eptatretus_burgeri
ENSSDUG00000002965	rab11ba	100	90.826	ENSEBUG00000011775	rab11ba	99	90.732	Eptatretus_burgeri
ENSSDUG00000002965	rab11ba	66	99.301	ENSEEUG00000009165	-	100	99.301	Erinaceus_europaeus
ENSSDUG00000002965	rab11ba	89	92.268	ENSELUG00000019240	-	99	92.268	Esox_lucius
ENSSDUG00000002965	rab11ba	100	94.495	ENSFCAG00000015216	RAB11B	100	94.495	Felis_catus
ENSSDUG00000002965	rab11ba	100	94.495	ENSFDAG00000019872	RAB11B	100	94.495	Fukomys_damarensis
ENSSDUG00000002965	rab11ba	100	99.083	ENSFHEG00000022642	rab11ba	100	99.083	Fundulus_heteroclitus
ENSSDUG00000002965	rab11ba	100	94.954	ENSGMOG00000007390	rab11ba	99	94.954	Gadus_morhua
ENSSDUG00000002965	rab11ba	100	99.541	ENSGAFG00000005679	rab11ba	100	99.541	Gambusia_affinis
ENSSDUG00000002965	rab11ba	100	95.872	ENSGAGG00000012557	-	100	95.872	Gopherus_agassizii
ENSSDUG00000002965	rab11ba	100	94.954	ENSHGLG00000014984	RAB11B	100	94.954	Heterocephalus_glaber_female
ENSSDUG00000002965	rab11ba	100	94.954	ENSHGLG00100003638	RAB11B	100	94.954	Heterocephalus_glaber_male
ENSSDUG00000002965	rab11ba	100	94.954	ENSSTOG00000031571	RAB11B	100	94.954	Ictidomys_tridecemlineatus
ENSSDUG00000002965	rab11ba	100	94.954	ENSJJAG00000018891	Rab11b	100	94.954	Jaculus_jaculus
ENSSDUG00000002965	rab11ba	100	100.000	ENSKMAG00000006082	-	100	100.000	Kryptolebias_marmoratus
ENSSDUG00000002965	rab11ba	100	96.330	ENSLBEG00000006087	rab11ba	100	96.330	Labrus_bergylta
ENSSDUG00000002965	rab11ba	78	99.412	ENSLACG00000016974	RAB11B	99	99.412	Latimeria_chalumnae
ENSSDUG00000002965	rab11ba	100	94.954	ENSLAFG00000013598	RAB11B	100	94.954	Loxodonta_africana
ENSSDUG00000002965	rab11ba	100	94.954	ENSMNEG00000039759	-	100	94.954	Macaca_nemestrina
ENSSDUG00000002965	rab11ba	100	98.624	ENSMAMG00000018556	rab11ba	100	98.624	Mastacembelus_armatus
ENSSDUG00000002965	rab11ba	93	89.163	ENSMZEG00005019251	-	92	89.163	Maylandia_zebra
ENSSDUG00000002965	rab11ba	100	97.248	ENSMZEG00005010947	rab11ba	100	97.248	Maylandia_zebra
ENSSDUG00000002965	rab11ba	100	95.413	ENSMAUG00000021579	Rab11b	100	95.413	Mesocricetus_auratus
ENSSDUG00000002965	rab11ba	100	94.495	ENSMOCG00000012667	Rab11b	100	94.495	Microtus_ochrogaster
ENSSDUG00000002965	rab11ba	100	94.495	ENSMALG00000021949	rab11ba	100	94.495	Monopterus_albus
ENSSDUG00000002965	rab11ba	100	94.954	MGP_CAROLIEiJ_G0021415	Rab11b	99	97.297	Mus_caroli
ENSSDUG00000002965	rab11ba	100	95.872	ENSMUSG00000077450	Rab11b	99	97.297	Mus_musculus
ENSSDUG00000002965	rab11ba	100	94.954	MGP_PahariEiJ_G0020420	Rab11b	100	94.954	Mus_pahari
ENSSDUG00000002965	rab11ba	100	94.954	MGP_SPRETEiJ_G0022327	Rab11b	99	97.297	Mus_spretus
ENSSDUG00000002965	rab11ba	100	94.495	ENSMPUG00000007263	RAB11B	100	94.495	Mustela_putorius_furo
ENSSDUG00000002965	rab11ba	100	90.498	ENSMLUG00000002308	-	100	90.498	Myotis_lucifugus
ENSSDUG00000002965	rab11ba	100	94.954	ENSNGAG00000015757	Rab11b	100	94.954	Nannospalax_galili
ENSSDUG00000002965	rab11ba	100	97.706	ENSNBRG00000023898	rab11ba	84	97.706	Neolamprologus_brichardi
ENSSDUG00000002965	rab11ba	100	94.954	ENSNLEG00000001733	RAB11B	100	94.954	Nomascus_leucogenys
ENSSDUG00000002965	rab11ba	100	94.954	ENSODEG00000011371	RAB11B	100	94.954	Octodon_degus
ENSSDUG00000002965	rab11ba	100	98.165	ENSONIG00000002535	rab11ba	100	98.165	Oreochromis_niloticus
ENSSDUG00000002965	rab11ba	77	95.152	ENSOCUG00000028208	RAB11B	66	95.152	Oryctolagus_cuniculus
ENSSDUG00000002965	rab11ba	99	99.078	ENSORLG00000015307	rab11ba	99	99.078	Oryzias_latipes
ENSSDUG00000002965	rab11ba	99	99.078	ENSORLG00020020816	rab11ba	99	99.078	Oryzias_latipes_hni
ENSSDUG00000002965	rab11ba	99	99.074	ENSORLG00015016946	rab11ba	81	99.074	Oryzias_latipes_hsok
ENSSDUG00000002965	rab11ba	99	99.078	ENSOMEG00000002581	rab11ba	99	99.078	Oryzias_melastigma
ENSSDUG00000002965	rab11ba	100	94.954	ENSOGAG00000003227	RAB11B	99	94.954	Otolemur_garnettii
ENSSDUG00000002965	rab11ba	100	94.954	ENSOARG00000003801	RAB11B	97	94.954	Ovis_aries
ENSSDUG00000002965	rab11ba	80	97.126	ENSPPRG00000010160	RAB11B	85	97.126	Panthera_pardus
ENSSDUG00000002965	rab11ba	100	94.954	ENSPEMG00000014536	Rab11b	100	94.954	Peromyscus_maniculatus_bairdii
ENSSDUG00000002965	rab11ba	96	80.000	ENSPMAG00000009335	-	100	80.000	Petromyzon_marinus
ENSSDUG00000002965	rab11ba	100	100.000	ENSPFOG00000006159	rab11ba	100	100.000	Poecilia_formosa
ENSSDUG00000002965	rab11ba	100	100.000	ENSPLAG00000014243	rab11ba	100	100.000	Poecilia_latipinna
ENSSDUG00000002965	rab11ba	100	100.000	ENSPMEG00000007917	rab11ba	75	100.000	Poecilia_mexicana
ENSSDUG00000002965	rab11ba	100	100.000	ENSPREG00000006357	rab11ba	78	100.000	Poecilia_reticulata
ENSSDUG00000002965	rab11ba	100	94.954	ENSPPYG00000009504	RAB11B	100	94.954	Pongo_abelii
ENSSDUG00000002965	rab11ba	100	86.239	ENSPCAG00000016118	RAB11B	100	86.239	Procavia_capensis
ENSSDUG00000002965	rab11ba	67	97.260	ENSPCOG00000008655	-	100	97.260	Propithecus_coquereli
ENSSDUG00000002965	rab11ba	100	94.954	ENSPCOG00000028053	RAB11B	100	94.954	Propithecus_coquereli
ENSSDUG00000002965	rab11ba	100	94.954	ENSPVAG00000009645	RAB11B	100	94.954	Pteropus_vampyrus
ENSSDUG00000002965	rab11ba	100	97.248	ENSPNYG00000019644	rab11ba	100	97.248	Pundamilia_nyererei
ENSSDUG00000002965	rab11ba	100	75.455	ENSPNYG00000023810	-	97	75.455	Pundamilia_nyererei
ENSSDUG00000002965	rab11ba	100	95.413	ENSPNAG00000006431	-	100	95.413	Pygocentrus_nattereri
ENSSDUG00000002965	rab11ba	100	94.954	ENSPNAG00000020475	rab11ba	100	94.954	Pygocentrus_nattereri
ENSSDUG00000002965	rab11ba	100	94.954	ENSRNOG00000007648	Rab11b	100	94.954	Rattus_norvegicus
ENSSDUG00000002965	rab11ba	100	94.954	ENSSBOG00000035094	RAB11B	100	94.954	Saimiri_boliviensis_boliviensis
ENSSDUG00000002965	rab11ba	100	100.000	ENSSLDG00000005221	rab11ba	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000002965	rab11ba	100	98.165	ENSSPAG00000017313	rab11ba	100	98.165	Stegastes_partitus
ENSSDUG00000002965	rab11ba	100	94.954	ENSSSCG00000013600	RAB11B	100	94.954	Sus_scrofa
ENSSDUG00000002965	rab11ba	60	99.225	ENSTBEG00000014750	-	100	99.225	Tupaia_belangeri
ENSSDUG00000002965	rab11ba	100	94.954	ENSTTRG00000009758	RAB11B	100	94.954	Tursiops_truncatus
ENSSDUG00000002965	rab11ba	95	76.585	ENSUMAG00000014594	RAB11B	99	74.882	Ursus_maritimus
ENSSDUG00000002965	rab11ba	100	94.954	ENSVVUG00000025210	RAB11B	100	94.954	Vulpes_vulpes
ENSSDUG00000002965	rab11ba	100	94.495	ENSXETG00000021890	rab11b.2	99	94.495	Xenopus_tropicalis
ENSSDUG00000002965	rab11ba	61	98.496	ENSXCOG00000009194	-	98	98.496	Xiphophorus_couchianus
ENSSDUG00000002965	rab11ba	100	99.541	ENSXMAG00000013416	rab11ba	100	99.541	Xiphophorus_maculatus