EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000002993 (Gene tree)
Gene ID: 111229306
Gene Symbol: exosc1
Alias: -
Full Name: exosome component 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 7607 bases
Position: chrBDQW01000230.1:2198933-2206539
Accession: 111229306
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000004005	EXOSC1	PF10447.9	1.7e-15	1	1
ENSSDUP00000004005	ECR1_N	PF14382.6	4.5e-11	1	1
ENSSDUP00000004022	ECR1_N	PF14382.6	4.9e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000004107	-	537	-	ENSSDUP00000004022	178 (aa)	-	-
ENSSDUT00000004090	-	4819	XM_022755587	ENSSDUP00000004005	194 (aa)	XP_022611308	UPI000BBE7B3A

Gene Model

Click here to download ENSSDUG00000002993's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000002993's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000002993	exosc1	98	80.628	ENSG00000171311	EXOSC1	98	80.628	Homo_sapiens
ENSSDUG00000002993	exosc1	100	97.423	ENSAPOG00000007822	exosc1	100	97.423	Acanthochromis_polyacanthus
ENSSDUG00000002993	exosc1	98	81.152	ENSAMEG00000000129	EXOSC1	98	81.152	Ailuropoda_melanoleuca
ENSSDUG00000002993	exosc1	95	96.757	ENSACIG00000018956	exosc1	91	96.757	Amphilophus_citrinellus
ENSSDUG00000002993	exosc1	100	97.938	ENSAOCG00000010699	exosc1	100	97.938	Amphiprion_ocellaris
ENSSDUG00000002993	exosc1	92	95.092	ENSAPEG00000012690	exosc1	97	95.092	Amphiprion_percula
ENSSDUG00000002993	exosc1	100	97.423	ENSATEG00000018683	exosc1	100	97.423	Anabas_testudineus
ENSSDUG00000002993	exosc1	96	77.005	ENSACAG00000002101	EXOSC1	96	77.005	Anolis_carolinensis
ENSSDUG00000002993	exosc1	98	80.628	ENSANAG00000034669	EXOSC1	98	80.628	Aotus_nancymaae
ENSSDUG00000002993	exosc1	100	97.423	ENSACLG00000021243	exosc1	100	97.423	Astatotilapia_calliptera
ENSSDUG00000002993	exosc1	100	93.814	ENSAMXG00000011116	exosc1	100	93.814	Astyanax_mexicanus
ENSSDUG00000002993	exosc1	98	81.152	ENSBTAG00000012699	EXOSC1	98	81.152	Bos_taurus
ENSSDUG00000002993	exosc1	94	36.649	WBGene00012966	exos-1	92	36.649	Caenorhabditis_elegans
ENSSDUG00000002993	exosc1	98	80.105	ENSCJAG00000016586	EXOSC1	98	80.105	Callithrix_jacchus
ENSSDUG00000002993	exosc1	98	80.628	ENSCAFG00000009068	EXOSC1	92	80.628	Canis_familiaris
ENSSDUG00000002993	exosc1	98	80.628	ENSCAFG00020006002	EXOSC1	92	80.628	Canis_lupus_dingo
ENSSDUG00000002993	exosc1	98	81.152	ENSCHIG00000015253	EXOSC1	98	81.152	Capra_hircus
ENSSDUG00000002993	exosc1	98	79.581	ENSTSYG00000000760	EXOSC1	98	79.581	Carlito_syrichta
ENSSDUG00000002993	exosc1	98	80.628	ENSCPOG00000001173	EXOSC1	98	80.628	Cavia_porcellus
ENSSDUG00000002993	exosc1	98	46.023	ENSCCAG00000023986	EXOSC1	98	46.023	Cebus_capucinus
ENSSDUG00000002993	exosc1	98	80.628	ENSCATG00000034114	EXOSC1	98	80.628	Cercocebus_atys
ENSSDUG00000002993	exosc1	98	80.628	ENSCLAG00000002463	EXOSC1	98	80.628	Chinchilla_lanigera
ENSSDUG00000002993	exosc1	98	80.105	ENSCSAG00000005870	EXOSC1	98	80.105	Chlorocebus_sabaeus
ENSSDUG00000002993	exosc1	95	67.935	ENSCHOG00000006477	EXOSC1	98	67.935	Choloepus_hoffmanni
ENSSDUG00000002993	exosc1	60	67.290	ENSCPBG00000011949	EXOSC1	88	67.290	Chrysemys_picta_bellii
ENSSDUG00000002993	exosc1	99	50.777	ENSCING00000022734	-	92	50.777	Ciona_intestinalis
ENSSDUG00000002993	exosc1	99	53.368	ENSCSAVG00000010865	-	98	53.368	Ciona_savignyi
ENSSDUG00000002993	exosc1	98	80.628	ENSCANG00000034159	EXOSC1	98	80.628	Colobus_angolensis_palliatus
ENSSDUG00000002993	exosc1	98	79.581	ENSCGRG00001000335	Exosc1	98	79.581	Cricetulus_griseus_chok1gshd
ENSSDUG00000002993	exosc1	98	79.581	ENSCGRG00000011602	Exosc1	98	79.581	Cricetulus_griseus_crigri
ENSSDUG00000002993	exosc1	100	82.990	ENSCSEG00000007895	exosc1	97	82.990	Cynoglossus_semilaevis
ENSSDUG00000002993	exosc1	100	89.326	ENSCVAG00000016748	exosc1	100	89.326	Cyprinodon_variegatus
ENSSDUG00000002993	exosc1	100	93.814	ENSDARG00000059841	exosc1	100	93.814	Danio_rerio
ENSSDUG00000002993	exosc1	74	76.552	ENSDNOG00000007983	EXOSC1	98	76.552	Dasypus_novemcinctus
ENSSDUG00000002993	exosc1	98	80.105	ENSDORG00000016528	Exosc1	98	80.105	Dipodomys_ordii
ENSSDUG00000002993	exosc1	95	47.368	FBgn0032346	Csl4	92	47.368	Drosophila_melanogaster
ENSSDUG00000002993	exosc1	98	79.058	ENSETEG00000002469	-	98	79.058	Echinops_telfairi
ENSSDUG00000002993	exosc1	97	64.583	ENSEBUG00000008164	exosc1	96	64.583	Eptatretus_burgeri
ENSSDUG00000002993	exosc1	98	71.728	ENSEASG00005008684	EXOSC1	98	71.728	Equus_asinus_asinus
ENSSDUG00000002993	exosc1	64	57.018	ENSECAG00000010621	EXOSC1	69	56.034	Equus_caballus
ENSSDUG00000002993	exosc1	98	79.581	ENSEEUG00000005647	EXOSC1	98	79.581	Erinaceus_europaeus
ENSSDUG00000002993	exosc1	99	91.371	ENSELUG00000017369	exosc1	87	91.371	Esox_lucius
ENSSDUG00000002993	exosc1	98	81.152	ENSFCAG00000040563	EXOSC1	98	79.885	Felis_catus
ENSSDUG00000002993	exosc1	98	78.010	ENSFALG00000008450	EXOSC1	98	78.010	Ficedula_albicollis
ENSSDUG00000002993	exosc1	98	81.152	ENSFDAG00000000846	EXOSC1	98	81.152	Fukomys_damarensis
ENSSDUG00000002993	exosc1	100	87.113	ENSFHEG00000009154	exosc1	100	87.113	Fundulus_heteroclitus
ENSSDUG00000002993	exosc1	100	97.423	ENSGMOG00000008993	exosc1	100	97.423	Gadus_morhua
ENSSDUG00000002993	exosc1	98	65.445	ENSGALG00000039917	EXOSC1	99	84.828	Gallus_gallus
ENSSDUG00000002993	exosc1	100	87.629	ENSGAFG00000010265	exosc1	95	87.629	Gambusia_affinis
ENSSDUG00000002993	exosc1	100	94.330	ENSGACG00000018936	exosc1	100	94.330	Gasterosteus_aculeatus
ENSSDUG00000002993	exosc1	98	77.487	ENSGAGG00000019192	EXOSC1	98	77.487	Gopherus_agassizii
ENSSDUG00000002993	exosc1	98	69.634	ENSGGOG00000003099	EXOSC1	98	69.634	Gorilla_gorilla
ENSSDUG00000002993	exosc1	100	97.423	ENSHBUG00000017857	exosc1	100	97.423	Haplochromis_burtoni
ENSSDUG00000002993	exosc1	98	80.628	ENSHGLG00000016927	EXOSC1	98	80.628	Heterocephalus_glaber_female
ENSSDUG00000002993	exosc1	98	80.628	ENSHGLG00100012208	EXOSC1	98	80.628	Heterocephalus_glaber_male
ENSSDUG00000002993	exosc1	100	95.361	ENSHCOG00000019882	exosc1	100	95.361	Hippocampus_comes
ENSSDUG00000002993	exosc1	100	91.237	ENSIPUG00000007685	exosc1	100	91.237	Ictalurus_punctatus
ENSSDUG00000002993	exosc1	98	80.105	ENSSTOG00000006615	EXOSC1	98	80.105	Ictidomys_tridecemlineatus
ENSSDUG00000002993	exosc1	65	64.348	ENSSTOG00000029860	-	91	63.025	Ictidomys_tridecemlineatus
ENSSDUG00000002993	exosc1	98	80.628	ENSJJAG00000013311	Exosc1	98	80.628	Jaculus_jaculus
ENSSDUG00000002993	exosc1	100	93.299	ENSKMAG00000001202	exosc1	82	93.299	Kryptolebias_marmoratus
ENSSDUG00000002993	exosc1	100	96.907	ENSLBEG00000011448	exosc1	100	96.907	Labrus_bergylta
ENSSDUG00000002993	exosc1	100	65.000	ENSLOCG00000003776	exosc1	100	65.217	Lepisosteus_oculatus
ENSSDUG00000002993	exosc1	98	80.628	ENSLAFG00000015983	EXOSC1	98	80.628	Loxodonta_africana
ENSSDUG00000002993	exosc1	98	80.628	ENSMFAG00000001493	EXOSC1	98	80.628	Macaca_fascicularis
ENSSDUG00000002993	exosc1	98	80.628	ENSMMUG00000020028	EXOSC1	98	79.310	Macaca_mulatta
ENSSDUG00000002993	exosc1	98	80.628	ENSMNEG00000029816	EXOSC1	98	80.628	Macaca_nemestrina
ENSSDUG00000002993	exosc1	98	74.869	ENSMLEG00000027643	EXOSC1	98	74.869	Mandrillus_leucophaeus
ENSSDUG00000002993	exosc1	100	96.392	ENSMAMG00000012200	exosc1	100	96.392	Mastacembelus_armatus
ENSSDUG00000002993	exosc1	100	97.423	ENSMZEG00005007042	exosc1	100	97.423	Maylandia_zebra
ENSSDUG00000002993	exosc1	98	69.634	ENSMAUG00000020462	-	98	69.634	Mesocricetus_auratus
ENSSDUG00000002993	exosc1	98	80.105	ENSMICG00000007664	EXOSC1	98	78.736	Microcebus_murinus
ENSSDUG00000002993	exosc1	98	79.581	ENSMOCG00000006004	-	98	79.581	Microtus_ochrogaster
ENSSDUG00000002993	exosc1	97	75.132	ENSMOCG00000017124	-	96	75.132	Microtus_ochrogaster
ENSSDUG00000002993	exosc1	100	71.649	ENSMMOG00000021403	exosc1	100	71.649	Mola_mola
ENSSDUG00000002993	exosc1	98	81.250	ENSMODG00000004213	EXOSC1	98	81.250	Monodelphis_domestica
ENSSDUG00000002993	exosc1	95	96.216	ENSMALG00000007061	exosc1	93	96.216	Monopterus_albus
ENSSDUG00000002993	exosc1	98	79.058	MGP_CAROLIEiJ_G0022959	Exosc1	98	79.058	Mus_caroli
ENSSDUG00000002993	exosc1	98	79.058	ENSMUSG00000034321	Exosc1	98	79.058	Mus_musculus
ENSSDUG00000002993	exosc1	98	79.581	MGP_PahariEiJ_G0014449	Exosc1	98	79.581	Mus_pahari
ENSSDUG00000002993	exosc1	98	79.058	MGP_SPRETEiJ_G0023880	Exosc1	98	79.058	Mus_spretus
ENSSDUG00000002993	exosc1	98	81.152	ENSMPUG00000017044	EXOSC1	98	81.152	Mustela_putorius_furo
ENSSDUG00000002993	exosc1	98	80.628	ENSMLUG00000009228	EXOSC1	98	80.628	Myotis_lucifugus
ENSSDUG00000002993	exosc1	98	78.010	ENSNGAG00000022033	Exosc1	98	78.010	Nannospalax_galili
ENSSDUG00000002993	exosc1	100	76.289	ENSNBRG00000024007	exosc1	100	75.843	Neolamprologus_brichardi
ENSSDUG00000002993	exosc1	98	80.105	ENSNLEG00000013872	EXOSC1	98	80.105	Nomascus_leucogenys
ENSSDUG00000002993	exosc1	63	72.321	ENSMEUG00000002246	EXOSC1	97	72.321	Notamacropus_eugenii
ENSSDUG00000002993	exosc1	98	80.105	ENSOPRG00000005065	EXOSC1	98	80.105	Ochotona_princeps
ENSSDUG00000002993	exosc1	98	81.152	ENSODEG00000016709	EXOSC1	98	81.152	Octodon_degus
ENSSDUG00000002993	exosc1	100	97.423	ENSONIG00000017683	exosc1	99	97.423	Oreochromis_niloticus
ENSSDUG00000002993	exosc1	59	91.228	ENSOANG00000006563	EXOSC1	98	87.805	Ornithorhynchus_anatinus
ENSSDUG00000002993	exosc1	98	74.869	ENSOCUG00000026461	-	98	74.869	Oryctolagus_cuniculus
ENSSDUG00000002993	exosc1	98	79.167	ENSOCUG00000011898	-	98	79.167	Oryctolagus_cuniculus
ENSSDUG00000002993	exosc1	100	91.282	ENSORLG00000011595	exosc1	100	91.282	Oryzias_latipes
ENSSDUG00000002993	exosc1	100	91.282	ENSORLG00020005831	exosc1	100	91.282	Oryzias_latipes_hni
ENSSDUG00000002993	exosc1	100	90.769	ENSORLG00015004317	exosc1	100	90.769	Oryzias_latipes_hsok
ENSSDUG00000002993	exosc1	100	76.804	ENSOMEG00000013907	exosc1	99	76.804	Oryzias_melastigma
ENSSDUG00000002993	exosc1	98	79.581	ENSOGAG00000016259	EXOSC1	98	79.581	Otolemur_garnettii
ENSSDUG00000002993	exosc1	98	80.628	ENSOARG00000010136	EXOSC1	98	80.628	Ovis_aries
ENSSDUG00000002993	exosc1	98	74.611	ENSPPAG00000039842	EXOSC1	98	74.611	Pan_paniscus
ENSSDUG00000002993	exosc1	98	81.152	ENSPPRG00000023366	EXOSC1	98	81.152	Panthera_pardus
ENSSDUG00000002993	exosc1	98	81.152	ENSPTIG00000017701	EXOSC1	98	81.152	Panthera_tigris_altaica
ENSSDUG00000002993	exosc1	98	80.628	ENSPTRG00000002808	EXOSC1	98	80.628	Pan_troglodytes
ENSSDUG00000002993	exosc1	98	80.628	ENSPANG00000021324	EXOSC1	98	80.628	Papio_anubis
ENSSDUG00000002993	exosc1	100	91.237	ENSPKIG00000016037	exosc1	100	91.237	Paramormyrops_kingsleyae
ENSSDUG00000002993	exosc1	91	66.316	ENSPSIG00000013571	EXOSC1	98	80.165	Pelodiscus_sinensis
ENSSDUG00000002993	exosc1	100	84.021	ENSPMGG00000014002	exosc1	100	84.021	Periophthalmus_magnuspinnatus
ENSSDUG00000002993	exosc1	98	79.581	ENSPEMG00000010710	-	98	79.581	Peromyscus_maniculatus_bairdii
ENSSDUG00000002993	exosc1	95	69.355	ENSPMAG00000000195	exosc1	95	69.355	Petromyzon_marinus
ENSSDUG00000002993	exosc1	98	80.628	ENSPCIG00000002210	EXOSC1	97	80.628	Phascolarctos_cinereus
ENSSDUG00000002993	exosc1	100	87.113	ENSPFOG00000006755	exosc1	95	87.113	Poecilia_formosa
ENSSDUG00000002993	exosc1	100	87.113	ENSPLAG00000005880	exosc1	100	87.113	Poecilia_latipinna
ENSSDUG00000002993	exosc1	100	87.113	ENSPMEG00000015598	exosc1	95	87.113	Poecilia_mexicana
ENSSDUG00000002993	exosc1	100	74.742	ENSPREG00000000405	exosc1	94	74.742	Poecilia_reticulata
ENSSDUG00000002993	exosc1	98	80.628	ENSPPYG00000002531	EXOSC1	98	80.628	Pongo_abelii
ENSSDUG00000002993	exosc1	98	79.581	ENSPCAG00000009135	EXOSC1	98	79.581	Procavia_capensis
ENSSDUG00000002993	exosc1	98	73.822	ENSPCOG00000027539	EXOSC1	98	73.822	Propithecus_coquereli
ENSSDUG00000002993	exosc1	98	80.628	ENSPVAG00000003372	EXOSC1	98	80.628	Pteropus_vampyrus
ENSSDUG00000002993	exosc1	100	97.423	ENSPNYG00000021745	exosc1	100	97.423	Pundamilia_nyererei
ENSSDUG00000002993	exosc1	100	92.784	ENSPNAG00000001944	exosc1	100	92.784	Pygocentrus_nattereri
ENSSDUG00000002993	exosc1	98	79.581	ENSRNOG00000048708	Exosc1	98	79.581	Rattus_norvegicus
ENSSDUG00000002993	exosc1	98	80.628	ENSRBIG00000035618	EXOSC1	98	80.628	Rhinopithecus_bieti
ENSSDUG00000002993	exosc1	98	80.628	ENSRROG00000032589	EXOSC1	98	79.310	Rhinopithecus_roxellana
ENSSDUG00000002993	exosc1	64	37.500	YNL232W	CSL4	54	37.500	Saccharomyces_cerevisiae
ENSSDUG00000002993	exosc1	98	80.628	ENSSBOG00000000359	EXOSC1	98	80.628	Saimiri_boliviensis_boliviensis
ENSSDUG00000002993	exosc1	75	90.411	ENSSHAG00000018219	EXOSC1	99	90.411	Sarcophilus_harrisii
ENSSDUG00000002993	exosc1	100	88.660	ENSSFOG00015016289	-	100	88.660	Scleropages_formosus
ENSSDUG00000002993	exosc1	100	91.237	ENSSFOG00015009069	exosc1	100	91.237	Scleropages_formosus
ENSSDUG00000002993	exosc1	100	98.454	ENSSMAG00000003721	exosc1	100	98.454	Scophthalmus_maximus
ENSSDUG00000002993	exosc1	100	100.000	ENSSLDG00000025181	exosc1	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000002993	exosc1	98	69.110	ENSSARG00000000162	EXOSC1	98	69.110	Sorex_araneus
ENSSDUG00000002993	exosc1	98	75.393	ENSSPUG00000012263	EXOSC1	98	75.393	Sphenodon_punctatus
ENSSDUG00000002993	exosc1	100	97.191	ENSSPAG00000016792	exosc1	84	97.191	Stegastes_partitus
ENSSDUG00000002993	exosc1	98	80.105	ENSSSCG00000010518	EXOSC1	89	80.105	Sus_scrofa
ENSSDUG00000002993	exosc1	98	77.487	ENSTGUG00000009692	EXOSC1	98	77.487	Taeniopygia_guttata
ENSSDUG00000002993	exosc1	98	81.579	ENSTRUG00000007706	exosc1	98	81.579	Takifugu_rubripes
ENSSDUG00000002993	exosc1	98	81.347	ENSTNIG00000014079	exosc1	97	81.347	Tetraodon_nigroviridis
ENSSDUG00000002993	exosc1	98	74.346	ENSTBEG00000006011	EXOSC1	98	74.346	Tupaia_belangeri
ENSSDUG00000002993	exosc1	94	82.514	ENSTTRG00000009887	EXOSC1	99	82.514	Tursiops_truncatus
ENSSDUG00000002993	exosc1	98	64.921	ENSUAMG00000010266	EXOSC1	98	64.921	Ursus_americanus
ENSSDUG00000002993	exosc1	98	64.921	ENSUMAG00000022002	EXOSC1	98	64.921	Ursus_maritimus
ENSSDUG00000002993	exosc1	98	80.628	ENSVVUG00000023192	EXOSC1	62	80.628	Vulpes_vulpes
ENSSDUG00000002993	exosc1	99	76.684	ENSXETG00000003434	exosc1	99	76.684	Xenopus_tropicalis
ENSSDUG00000002993	exosc1	62	89.256	ENSXCOG00000014499	exosc1	93	89.256	Xiphophorus_couchianus
ENSSDUG00000002993	exosc1	100	75.258	ENSXMAG00000023382	exosc1	94	75.258	Xiphophorus_maculatus