EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000003019 (Gene tree)
Gene ID: 111220581
Gene Symbol: tomm20a
Alias: arid4b|ch1073-321c8.1|wu:fk47b11
Full Name: AT-rich interaction domain 4B
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 39917 bases
Position: chrBDQW01000073.1:5786441-5826357
Accession: 111220581
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000004020	Tudor-knot	PF11717.8	2.2e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000004147	-	5912	XM_022743701	ENSSDUP00000004056	1241 (aa)	XP_022599422	UPI000BBEE7E4
ENSSDUT00000004105	-	6095	XM_022743699	ENSSDUP00000004020	1302 (aa)	XP_022599420	UPI000BBEA331

Gene Model

Click here to download ENSSDUG00000003019's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000003019's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000003019	tomm20a	87	74.760	ENSG00000054267	ARID4B	89	75.243	Homo_sapiens
ENSSDUG00000003019	tomm20a	100	93.180	ENSAPOG00000010823	tomm20a	100	93.180	Acanthochromis_polyacanthus
ENSSDUG00000003019	tomm20a	93	92.908	ENSACIG00000006313	tomm20a	100	92.908	Amphilophus_citrinellus
ENSSDUG00000003019	tomm20a	100	93.257	ENSAOCG00000003330	tomm20a	100	93.180	Amphiprion_ocellaris
ENSSDUG00000003019	tomm20a	100	93.180	ENSAPEG00000024018	tomm20a	100	93.103	Amphiprion_percula
ENSSDUG00000003019	tomm20a	100	91.125	ENSATEG00000014930	tomm20a	100	91.278	Anabas_testudineus
ENSSDUG00000003019	tomm20a	100	50.212	ENSAPLG00000004422	ARID4B	99	50.678	Anas_platyrhynchos
ENSSDUG00000003019	tomm20a	99	51.304	ENSACAG00000001289	ARID4B	99	52.434	Anolis_carolinensis
ENSSDUG00000003019	tomm20a	93	83.373	ENSACLG00000023521	tomm20a	100	84.137	Astatotilapia_calliptera
ENSSDUG00000003019	tomm20a	95	62.119	ENSAMXG00000003657	tomm20a	99	61.970	Astyanax_mexicanus
ENSSDUG00000003019	tomm20a	100	51.404	ENSBTAG00000000222	ARID4B	54	60.959	Bos_taurus
ENSSDUG00000003019	tomm20a	53	60.822	ENSCJAG00000018055	ARID4B	99	53.109	Callithrix_jacchus
ENSSDUG00000003019	tomm20a	53	60.787	ENSCAFG00000011439	ARID4B	99	53.251	Canis_familiaris
ENSSDUG00000003019	tomm20a	53	60.219	ENSCAFG00020027130	ARID4B	99	52.907	Canis_lupus_dingo
ENSSDUG00000003019	tomm20a	99	49.748	ENSCHIG00000020742	ARID4B	53	57.997	Capra_hircus
ENSSDUG00000003019	tomm20a	99	51.557	ENSCPOG00000034766	ARID4B	99	51.971	Cavia_porcellus
ENSSDUG00000003019	tomm20a	53	59.892	ENSCCAG00000021520	ARID4B	99	52.616	Cebus_capucinus
ENSSDUG00000003019	tomm20a	53	60.243	ENSCATG00000042166	ARID4B	99	52.800	Cercocebus_atys
ENSSDUG00000003019	tomm20a	100	52.457	ENSCLAG00000003255	ARID4B	99	53.553	Chinchilla_lanigera
ENSSDUG00000003019	tomm20a	100	50.564	ENSCPBG00000004501	ARID4B	99	52.076	Chrysemys_picta_bellii
ENSSDUG00000003019	tomm20a	53	58.880	ENSCANG00000027498	ARID4B	99	50.949	Colobus_angolensis_palliatus
ENSSDUG00000003019	tomm20a	100	51.638	ENSCGRG00001014397	Arid4b	99	52.890	Cricetulus_griseus_chok1gshd
ENSSDUG00000003019	tomm20a	99	51.677	ENSCGRG00000004910	Arid4b	99	52.860	Cricetulus_griseus_crigri
ENSSDUG00000003019	tomm20a	99	85.570	ENSCSEG00000012928	tomm20a	99	86.113	Cynoglossus_semilaevis
ENSSDUG00000003019	tomm20a	100	83.142	ENSCVAG00000003244	tomm20a	100	83.985	Cyprinodon_variegatus
ENSSDUG00000003019	tomm20a	100	64.643	ENSDARG00000090656	tomm20a	99	66.049	Danio_rerio
ENSSDUG00000003019	tomm20a	88	63.271	ENSETEG00000005596	ARID4B	89	62.735	Echinops_telfairi
ENSSDUG00000003019	tomm20a	64	57.143	ENSELUG00000018441	tomm20a	91	56.858	Esox_lucius
ENSSDUG00000003019	tomm20a	53	61.549	ENSFCAG00000030096	ARID4B	99	53.387	Felis_catus
ENSSDUG00000003019	tomm20a	100	51.618	ENSFALG00000013548	ARID4B	97	52.108	Ficedula_albicollis
ENSSDUG00000003019	tomm20a	99	51.702	ENSFDAG00000014194	ARID4B	99	52.988	Fukomys_damarensis
ENSSDUG00000003019	tomm20a	100	84.768	ENSFHEG00000003798	tomm20a	100	84.692	Fundulus_heteroclitus
ENSSDUG00000003019	tomm20a	90	77.647	ENSGMOG00000018747	tomm20a	91	72.549	Gadus_morhua
ENSSDUG00000003019	tomm20a	99	82.018	ENSGACG00000004298	tomm20a	100	82.929	Gasterosteus_aculeatus
ENSSDUG00000003019	tomm20a	53	60.163	ENSGGOG00000022080	ARID4B	99	52.954	Gorilla_gorilla
ENSSDUG00000003019	tomm20a	100	88.344	ENSHBUG00000020369	tomm20a	100	88.880	Haplochromis_burtoni
ENSSDUG00000003019	tomm20a	100	52.391	ENSHGLG00000012546	ARID4B	99	53.324	Heterocephalus_glaber_female
ENSSDUG00000003019	tomm20a	100	52.391	ENSHGLG00100015436	ARID4B	99	53.324	Heterocephalus_glaber_male
ENSSDUG00000003019	tomm20a	95	85.808	ENSHCOG00000010376	tomm20a	100	84.716	Hippocampus_comes
ENSSDUG00000003019	tomm20a	100	65.320	ENSIPUG00000014234	arid4b	99	65.197	Ictalurus_punctatus
ENSSDUG00000003019	tomm20a	52	61.281	ENSJJAG00000021368	Arid4b	54	61.708	Jaculus_jaculus
ENSSDUG00000003019	tomm20a	91	78.210	ENSKMAG00000010987	tomm20a	98	78.859	Kryptolebias_marmoratus
ENSSDUG00000003019	tomm20a	100	62.273	ENSLOCG00000015899	tomm20a	99	62.595	Lepisosteus_oculatus
ENSSDUG00000003019	tomm20a	53	60.055	ENSLAFG00000014295	ARID4B	99	52.218	Loxodonta_africana
ENSSDUG00000003019	tomm20a	93	91.021	ENSMAMG00000017134	tomm20a	99	91.315	Mastacembelus_armatus
ENSSDUG00000003019	tomm20a	100	88.190	ENSMZEG00005009879	tomm20a	100	88.727	Maylandia_zebra
ENSSDUG00000003019	tomm20a	100	51.355	ENSMGAG00000011896	ARID4B	99	52.298	Meleagris_gallopavo
ENSSDUG00000003019	tomm20a	99	52.643	ENSMICG00000016358	ARID4B	99	53.190	Microcebus_murinus
ENSSDUG00000003019	tomm20a	93	90.570	ENSMMOG00000000561	tomm20a	98	89.474	Mola_mola
ENSSDUG00000003019	tomm20a	100	91.782	ENSMALG00000005205	tomm20a	100	91.859	Monopterus_albus
ENSSDUG00000003019	tomm20a	100	52.240	ENSNGAG00000014629	Arid4b	99	52.685	Nannospalax_galili
ENSSDUG00000003019	tomm20a	93	89.387	ENSNBRG00000019684	tomm20a	100	91.745	Neolamprologus_brichardi
ENSSDUG00000003019	tomm20a	53	60.135	ENSNLEG00000002665	ARID4B	99	52.907	Nomascus_leucogenys
ENSSDUG00000003019	tomm20a	100	52.533	ENSODEG00000005373	ARID4B	99	53.603	Octodon_degus
ENSSDUG00000003019	tomm20a	53	61.172	ENSOCUG00000006605	ARID4B	99	52.971	Oryctolagus_cuniculus
ENSSDUG00000003019	tomm20a	100	80.934	ENSORLG00000012510	tomm20a	100	80.611	Oryzias_latipes
ENSSDUG00000003019	tomm20a	92	85.407	ENSORLG00020013988	tomm20a	100	86.449	Oryzias_latipes_hni
ENSSDUG00000003019	tomm20a	92	86.058	ENSORLG00015022835	tomm20a	100	86.620	Oryzias_latipes_hsok
ENSSDUG00000003019	tomm20a	100	81.902	ENSOMEG00000000521	tomm20a	100	81.825	Oryzias_melastigma
ENSSDUG00000003019	tomm20a	99	51.156	ENSOARG00000003481	ARID4B	53	60.905	Ovis_aries
ENSSDUG00000003019	tomm20a	53	59.946	ENSPPAG00000031651	ARID4B	99	52.616	Pan_paniscus
ENSSDUG00000003019	tomm20a	100	52.112	ENSPPRG00000013739	ARID4B	99	53.639	Panthera_pardus
ENSSDUG00000003019	tomm20a	100	52.471	ENSPTIG00000012520	ARID4B	99	53.869	Panthera_tigris_altaica
ENSSDUG00000003019	tomm20a	53	59.946	ENSPTRG00000002129	ARID4B	99	52.689	Pan_troglodytes
ENSSDUG00000003019	tomm20a	93	49.280	ENSPSIG00000011632	ARID4B	99	50.194	Pelodiscus_sinensis
ENSSDUG00000003019	tomm20a	52	80.451	ENSPMGG00000001596	tomm20a	89	80.451	Periophthalmus_magnuspinnatus
ENSSDUG00000003019	tomm20a	100	52.398	ENSPCIG00000029756	ARID4B	99	53.363	Phascolarctos_cinereus
ENSSDUG00000003019	tomm20a	100	84.844	ENSPFOG00000019430	tomm20a	100	85.301	Poecilia_formosa
ENSSDUG00000003019	tomm20a	100	84.539	ENSPLAG00000010554	tomm20a	100	84.996	Poecilia_latipinna
ENSSDUG00000003019	tomm20a	100	82.699	ENSPMEG00000003093	tomm20a	100	79.346	Poecilia_mexicana
ENSSDUG00000003019	tomm20a	100	83.664	ENSPREG00000007996	tomm20a	100	84.962	Poecilia_reticulata
ENSSDUG00000003019	tomm20a	100	51.014	ENSPVAG00000015159	ARID4B	99	52.064	Pteropus_vampyrus
ENSSDUG00000003019	tomm20a	99	82.055	ENSPNYG00000013988	tomm20a	100	81.595	Pundamilia_nyererei
ENSSDUG00000003019	tomm20a	100	68.703	ENSPNAG00000000523	tomm20a	92	67.688	Pygocentrus_nattereri
ENSSDUG00000003019	tomm20a	88	59.613	ENSRBIG00000042029	ARID4B	96	50.078	Rhinopithecus_bieti
ENSSDUG00000003019	tomm20a	53	61.066	ENSSHAG00000015214	ARID4B	99	51.629	Sarcophilus_harrisii
ENSSDUG00000003019	tomm20a	100	61.696	ENSSFOG00015000132	arid4b	99	62.691	Scleropages_formosus
ENSSDUG00000003019	tomm20a	76	51.597	ENSSFOG00015008923	tomm20a	98	53.252	Scleropages_formosus
ENSSDUG00000003019	tomm20a	100	89.023	ENSSMAG00000010430	tomm20a	100	89.248	Scophthalmus_maximus
ENSSDUG00000003019	tomm20a	100	51.957	ENSSPUG00000015466	ARID4B	97	52.628	Sphenodon_punctatus
ENSSDUG00000003019	tomm20a	100	93.252	ENSSPAG00000007358	tomm20a	100	93.482	Stegastes_partitus
ENSSDUG00000003019	tomm20a	53	61.528	ENSSSCG00000010156	ARID4B	99	52.544	Sus_scrofa
ENSSDUG00000003019	tomm20a	69	76.101	ENSTRUG00000002893	tomm20a	100	76.101	Takifugu_rubripes
ENSSDUG00000003019	tomm20a	70	67.883	ENSTBEG00000003961	ARID4B	63	67.640	Tupaia_belangeri
ENSSDUG00000003019	tomm20a	100	51.940	ENSTTRG00000002228	ARID4B	99	52.139	Tursiops_truncatus
ENSSDUG00000003019	tomm20a	68	58.678	ENSVPAG00000006841	ARID4B	68	59.336	Vicugna_pacos
ENSSDUG00000003019	tomm20a	52	58.391	ENSVVUG00000008154	ARID4B	98	52.021	Vulpes_vulpes
ENSSDUG00000003019	tomm20a	100	85.276	ENSXMAG00000006538	tomm20a	100	85.353	Xiphophorus_maculatus