EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000003029 (Gene tree)
Gene ID: 111224135
Gene Symbol: prpf8
Alias: id:ibd1257|ik:tdsubc_2a9|im:7141966|tdsubc_2a9|wu:fb37c02|wu:fb73e06|xx:tdsubc_2a9|zgc:56504
Full Name: pre-mRNA processing factor 8
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 16218 bases
Position: chrBDQW01000122.1:3446975-3463192
Accession: 111224135
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000004138	RRM_4	PF10598.9	3.1e-48	1	1
ENSSDUP00000004138	U5_2-snRNA_bdg	PF10597.9	7.2e-74	1	1
ENSSDUP00000004138	PRO8NT	PF08082.11	2.3e-87	1	1
ENSSDUP00000004138	U6-snRNA_bdg	PF10596.9	1.8e-89	1	1
ENSSDUP00000004138	PROCN	PF08083.11	4.9e-236	1	1
ENSSDUP00000004138	PRP8_domainIV	PF12134.8	4.3e-130	1	1
ENSSDUP00000004138	PROCT	PF08084.11	2.8e-53	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000004231	-	7017	XM_022748548	ENSSDUP00000004138	2338 (aa)	XP_022604269	UPI000BBE1456

Gene Model

Click here to download ENSSDUG00000003029's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000003029's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000003029	prpf8	100	97.776	ENSG00000174231	PRPF8	100	97.776	Homo_sapiens
ENSSDUG00000003029	prpf8	100	99.786	ENSAPOG00000010079	prpf8	100	99.786	Acanthochromis_polyacanthus
ENSSDUG00000003029	prpf8	100	97.776	ENSAMEG00000007940	PRPF8	100	97.776	Ailuropoda_melanoleuca
ENSSDUG00000003029	prpf8	100	97.580	ENSACIG00000018280	prpf8	100	97.580	Amphilophus_citrinellus
ENSSDUG00000003029	prpf8	100	99.743	ENSAOCG00000010725	prpf8	100	99.743	Amphiprion_ocellaris
ENSSDUG00000003029	prpf8	100	99.743	ENSAPEG00000014397	prpf8	100	99.743	Amphiprion_percula
ENSSDUG00000003029	prpf8	100	99.059	ENSATEG00000010062	prpf8	100	99.059	Anabas_testudineus
ENSSDUG00000003029	prpf8	96	98.221	ENSAPLG00000010357	PRPF8	100	98.221	Anas_platyrhynchos
ENSSDUG00000003029	prpf8	83	96.237	ENSACAG00000014784	PRPF8	99	96.237	Anolis_carolinensis
ENSSDUG00000003029	prpf8	100	97.776	ENSANAG00000032629	PRPF8	100	97.776	Aotus_nancymaae
ENSSDUG00000003029	prpf8	100	98.936	ENSACLG00000020858	prpf8	100	98.936	Astatotilapia_calliptera
ENSSDUG00000003029	prpf8	100	99.059	ENSAMXG00000020291	prpf8	100	99.059	Astyanax_mexicanus
ENSSDUG00000003029	prpf8	100	97.776	ENSBTAG00000011488	PRPF8	100	97.776	Bos_taurus
ENSSDUG00000003029	prpf8	99	86.228	WBGene00004187	prp-8	99	87.067	Caenorhabditis_elegans
ENSSDUG00000003029	prpf8	100	97.776	ENSCJAG00000001911	PRPF8	100	97.776	Callithrix_jacchus
ENSSDUG00000003029	prpf8	100	97.776	ENSCAFG00000019221	PRPF8	100	97.776	Canis_familiaris
ENSSDUG00000003029	prpf8	96	98.260	ENSCAFG00020009943	PRPF8	100	98.260	Canis_lupus_dingo
ENSSDUG00000003029	prpf8	100	97.776	ENSCHIG00000017499	PRPF8	100	97.776	Capra_hircus
ENSSDUG00000003029	prpf8	100	97.776	ENSTSYG00000014120	PRPF8	100	97.776	Carlito_syrichta
ENSSDUG00000003029	prpf8	96	96.036	ENSCAPG00000009459	PRPF8	99	96.036	Cavia_aperea
ENSSDUG00000003029	prpf8	100	97.776	ENSCPOG00000010379	PRPF8	100	97.776	Cavia_porcellus
ENSSDUG00000003029	prpf8	100	97.776	ENSCCAG00000031983	-	100	97.776	Cebus_capucinus
ENSSDUG00000003029	prpf8	100	97.776	ENSCATG00000038595	PRPF8	100	97.776	Cercocebus_atys
ENSSDUG00000003029	prpf8	100	97.776	ENSCLAG00000004388	PRPF8	100	97.776	Chinchilla_lanigera
ENSSDUG00000003029	prpf8	100	97.776	ENSCSAG00000013929	PRPF8	100	97.776	Chlorocebus_sabaeus
ENSSDUG00000003029	prpf8	81	97.333	ENSCHOG00000008590	PRPF8	88	97.333	Choloepus_hoffmanni
ENSSDUG00000003029	prpf8	100	97.776	ENSCPBG00000020409	PRPF8	100	97.776	Chrysemys_picta_bellii
ENSSDUG00000003029	prpf8	98	93.112	ENSCSAVG00000007825	-	100	91.366	Ciona_savignyi
ENSSDUG00000003029	prpf8	100	97.776	ENSCANG00000043088	PRPF8	100	97.776	Colobus_angolensis_palliatus
ENSSDUG00000003029	prpf8	73	99.409	ENSCGRG00000005129	Prpf8	100	99.409	Cricetulus_griseus_crigri
ENSSDUG00000003029	prpf8	100	99.188	ENSCSEG00000007905	prpf8	100	99.188	Cynoglossus_semilaevis
ENSSDUG00000003029	prpf8	100	98.847	ENSDARG00000026180	prpf8	100	98.847	Danio_rerio
ENSSDUG00000003029	prpf8	93	97.885	ENSDNOG00000018471	PRPF8	99	97.885	Dasypus_novemcinctus
ENSSDUG00000003029	prpf8	84	96.459	ENSDORG00000006185	Prpf8	96	96.459	Dipodomys_ordii
ENSSDUG00000003029	prpf8	99	91.524	FBgn0033688	Prp8	97	92.009	Drosophila_melanogaster
ENSSDUG00000003029	prpf8	100	92.429	ENSETEG00000017592	PRPF8	100	92.429	Echinops_telfairi
ENSSDUG00000003029	prpf8	99	93.433	ENSEBUG00000006548	prpf8	99	93.433	Eptatretus_burgeri
ENSSDUG00000003029	prpf8	100	97.776	ENSEASG00005009514	PRPF8	100	97.776	Equus_asinus_asinus
ENSSDUG00000003029	prpf8	97	98.286	ENSECAG00000021318	PRPF8	100	98.286	Equus_caballus
ENSSDUG00000003029	prpf8	67	98.519	ENSEEUG00000012120	-	67	98.519	Erinaceus_europaeus
ENSSDUG00000003029	prpf8	98	97.815	ENSELUG00000007120	prpf8	99	97.815	Esox_lucius
ENSSDUG00000003029	prpf8	100	97.776	ENSFCAG00000006297	PRPF8	100	97.776	Felis_catus
ENSSDUG00000003029	prpf8	100	97.861	ENSFALG00000006628	PRPF8	100	97.861	Ficedula_albicollis
ENSSDUG00000003029	prpf8	100	97.776	ENSFDAG00000004711	PRPF8	100	97.776	Fukomys_damarensis
ENSSDUG00000003029	prpf8	100	98.804	ENSFHEG00000021084	prpf8	100	98.804	Fundulus_heteroclitus
ENSSDUG00000003029	prpf8	100	96.827	ENSGMOG00000002028	prpf8	99	96.827	Gadus_morhua
ENSSDUG00000003029	prpf8	100	97.861	ENSGALG00000002943	PRPF8	100	97.861	Gallus_gallus
ENSSDUG00000003029	prpf8	99	99.015	ENSGAFG00000010337	prpf8	99	99.015	Gambusia_affinis
ENSSDUG00000003029	prpf8	100	99.358	ENSGACG00000008504	prpf8	100	99.358	Gasterosteus_aculeatus
ENSSDUG00000003029	prpf8	100	97.819	ENSGAGG00000008350	PRPF8	100	97.819	Gopherus_agassizii
ENSSDUG00000003029	prpf8	100	97.776	ENSGGOG00000005516	PRPF8	100	97.776	Gorilla_gorilla
ENSSDUG00000003029	prpf8	100	99.187	ENSHBUG00000016192	prpf8	100	99.187	Haplochromis_burtoni
ENSSDUG00000003029	prpf8	100	97.776	ENSHGLG00000012029	PRPF8	100	97.776	Heterocephalus_glaber_female
ENSSDUG00000003029	prpf8	100	97.776	ENSHGLG00100016494	PRPF8	100	97.776	Heterocephalus_glaber_male
ENSSDUG00000003029	prpf8	100	99.188	ENSHCOG00000016414	prpf8	100	99.188	Hippocampus_comes
ENSSDUG00000003029	prpf8	100	98.973	ENSIPUG00000023230	prpf8	100	98.973	Ictalurus_punctatus
ENSSDUG00000003029	prpf8	100	97.776	ENSSTOG00000005128	PRPF8	100	97.776	Ictidomys_tridecemlineatus
ENSSDUG00000003029	prpf8	100	95.637	ENSJJAG00000021159	Prpf8	100	95.637	Jaculus_jaculus
ENSSDUG00000003029	prpf8	99	99.184	ENSKMAG00000016118	prpf8	99	99.184	Kryptolebias_marmoratus
ENSSDUG00000003029	prpf8	100	99.487	ENSLBEG00000026903	prpf8	100	99.487	Labrus_bergylta
ENSSDUG00000003029	prpf8	95	95.493	ENSLACG00000010479	PRPF8	99	98.213	Latimeria_chalumnae
ENSSDUG00000003029	prpf8	99	98.589	ENSLOCG00000005409	prpf8	99	98.589	Lepisosteus_oculatus
ENSSDUG00000003029	prpf8	100	97.776	ENSLAFG00000015445	PRPF8	100	97.776	Loxodonta_africana
ENSSDUG00000003029	prpf8	100	97.776	ENSMFAG00000039995	PRPF8	100	97.776	Macaca_fascicularis
ENSSDUG00000003029	prpf8	100	97.776	ENSMMUG00000004820	PRPF8	100	97.776	Macaca_mulatta
ENSSDUG00000003029	prpf8	100	97.776	ENSMNEG00000035713	PRPF8	100	97.776	Macaca_nemestrina
ENSSDUG00000003029	prpf8	100	97.776	ENSMLEG00000037937	PRPF8	100	97.776	Mandrillus_leucophaeus
ENSSDUG00000003029	prpf8	100	99.701	ENSMAMG00000008919	prpf8	100	99.701	Mastacembelus_armatus
ENSSDUG00000003029	prpf8	100	98.936	ENSMZEG00005015073	prpf8	100	98.936	Maylandia_zebra
ENSSDUG00000003029	prpf8	100	97.861	ENSMGAG00000004769	PRPF8	100	97.861	Meleagris_gallopavo
ENSSDUG00000003029	prpf8	100	97.776	ENSMICG00000010320	PRPF8	100	97.776	Microcebus_murinus
ENSSDUG00000003029	prpf8	100	97.776	ENSMOCG00000016838	Prpf8	100	97.776	Microtus_ochrogaster
ENSSDUG00000003029	prpf8	100	99.145	ENSMMOG00000011887	prpf8	100	99.145	Mola_mola
ENSSDUG00000003029	prpf8	100	97.565	ENSMODG00000010480	PRPF8	100	97.565	Monodelphis_domestica
ENSSDUG00000003029	prpf8	97	98.628	ENSMALG00000003558	prpf8	100	98.628	Monopterus_albus
ENSSDUG00000003029	prpf8	100	97.733	MGP_CAROLIEiJ_G0016740	Prpf8	100	97.733	Mus_caroli
ENSSDUG00000003029	prpf8	100	97.733	ENSMUSG00000020850	Prpf8	100	97.733	Mus_musculus
ENSSDUG00000003029	prpf8	100	97.690	MGP_PahariEiJ_G0017877	Prpf8	100	97.690	Mus_pahari
ENSSDUG00000003029	prpf8	100	97.733	MGP_SPRETEiJ_G0017583	Prpf8	100	97.733	Mus_spretus
ENSSDUG00000003029	prpf8	100	97.776	ENSMPUG00000013227	PRPF8	100	97.776	Mustela_putorius_furo
ENSSDUG00000003029	prpf8	100	97.651	ENSMLUG00000002666	PRPF8	100	97.651	Myotis_lucifugus
ENSSDUG00000003029	prpf8	100	96.022	ENSNGAG00000005305	Prpf8	100	96.022	Nannospalax_galili
ENSSDUG00000003029	prpf8	100	98.979	ENSNBRG00000013127	prpf8	100	98.979	Neolamprologus_brichardi
ENSSDUG00000003029	prpf8	97	96.822	ENSNLEG00000000897	PRPF8	98	96.822	Nomascus_leucogenys
ENSSDUG00000003029	prpf8	98	96.349	ENSMEUG00000015999	PRPF8	100	96.349	Notamacropus_eugenii
ENSSDUG00000003029	prpf8	100	96.022	ENSOPRG00000003102	PRPF8	100	95.730	Ochotona_princeps
ENSSDUG00000003029	prpf8	100	97.776	ENSODEG00000008468	PRPF8	100	97.776	Octodon_degus
ENSSDUG00000003029	prpf8	100	98.936	ENSONIG00000008153	prpf8	100	98.936	Oreochromis_niloticus
ENSSDUG00000003029	prpf8	82	99.159	ENSOANG00000004250	PRPF8	97	99.159	Ornithorhynchus_anatinus
ENSSDUG00000003029	prpf8	100	97.776	ENSOCUG00000000081	PRPF8	100	97.776	Oryctolagus_cuniculus
ENSSDUG00000003029	prpf8	100	98.641	ENSORLG00000008036	prpf8	100	98.641	Oryzias_latipes
ENSSDUG00000003029	prpf8	100	98.599	ENSORLG00020021070	prpf8	100	98.599	Oryzias_latipes_hni
ENSSDUG00000003029	prpf8	100	98.641	ENSORLG00015002340	prpf8	100	98.641	Oryzias_latipes_hsok
ENSSDUG00000003029	prpf8	100	97.111	ENSOMEG00000016866	prpf8	100	97.111	Oryzias_melastigma
ENSSDUG00000003029	prpf8	100	97.651	ENSOARG00000013312	PRPF8	100	97.651	Ovis_aries
ENSSDUG00000003029	prpf8	100	97.776	ENSPPAG00000042753	PRPF8	100	97.776	Pan_paniscus
ENSSDUG00000003029	prpf8	100	97.776	ENSPPRG00000008746	PRPF8	100	97.776	Panthera_pardus
ENSSDUG00000003029	prpf8	100	97.690	ENSPTIG00000019200	PRPF8	100	97.690	Panthera_tigris_altaica
ENSSDUG00000003029	prpf8	100	97.776	ENSPTRG00000039576	PRPF8	100	97.776	Pan_troglodytes
ENSSDUG00000003029	prpf8	98	98.262	ENSPANG00000024607	PRPF8	98	98.262	Papio_anubis
ENSSDUG00000003029	prpf8	100	98.636	ENSPKIG00000011201	prpf8	100	98.636	Paramormyrops_kingsleyae
ENSSDUG00000003029	prpf8	100	97.733	ENSPSIG00000013393	PRPF8	100	97.733	Pelodiscus_sinensis
ENSSDUG00000003029	prpf8	100	97.776	ENSPEMG00000021699	Prpf8	100	97.776	Peromyscus_maniculatus_bairdii
ENSSDUG00000003029	prpf8	96	93.942	ENSPMAG00000005438	prpf8	100	93.987	Petromyzon_marinus
ENSSDUG00000003029	prpf8	100	97.565	ENSPCIG00000022603	PRPF8	100	98.170	Phascolarctos_cinereus
ENSSDUG00000003029	prpf8	100	98.346	ENSPFOG00000007005	prpf8	100	98.304	Poecilia_formosa
ENSSDUG00000003029	prpf8	100	97.519	ENSPLAG00000020777	prpf8	100	97.519	Poecilia_latipinna
ENSSDUG00000003029	prpf8	100	98.346	ENSPMEG00000004051	prpf8	100	98.304	Poecilia_mexicana
ENSSDUG00000003029	prpf8	100	99.016	ENSPREG00000021902	prpf8	100	99.016	Poecilia_reticulata
ENSSDUG00000003029	prpf8	100	97.776	ENSPPYG00000007777	PRPF8	100	97.776	Pongo_abelii
ENSSDUG00000003029	prpf8	90	97.030	ENSPCAG00000008938	PRPF8	90	97.030	Procavia_capensis
ENSSDUG00000003029	prpf8	100	97.776	ENSPCOG00000015182	PRPF8	100	97.776	Propithecus_coquereli
ENSSDUG00000003029	prpf8	93	98.614	ENSPVAG00000002134	PRPF8	93	98.614	Pteropus_vampyrus
ENSSDUG00000003029	prpf8	100	99.187	ENSPNYG00000016356	prpf8	100	99.187	Pundamilia_nyererei
ENSSDUG00000003029	prpf8	100	99.145	ENSPNAG00000009247	prpf8	100	99.145	Pygocentrus_nattereri
ENSSDUG00000003029	prpf8	100	97.733	ENSRNOG00000003495	Prpf8	100	97.733	Rattus_norvegicus
ENSSDUG00000003029	prpf8	100	97.776	ENSRBIG00000031219	PRPF8	100	97.813	Rhinopithecus_bieti
ENSSDUG00000003029	prpf8	100	97.776	ENSRROG00000038014	PRPF8	100	97.813	Rhinopithecus_roxellana
ENSSDUG00000003029	prpf8	99	62.473	YHR165C	PRP8	95	62.559	Saccharomyces_cerevisiae
ENSSDUG00000003029	prpf8	100	97.776	ENSSBOG00000029717	PRPF8	100	97.776	Saimiri_boliviensis_boliviensis
ENSSDUG00000003029	prpf8	100	97.522	ENSSHAG00000006167	PRPF8	100	97.522	Sarcophilus_harrisii
ENSSDUG00000003029	prpf8	100	98.676	ENSSFOG00015013905	prpf8	100	98.676	Scleropages_formosus
ENSSDUG00000003029	prpf8	100	99.487	ENSSMAG00000017736	prpf8	100	99.487	Scophthalmus_maximus
ENSSDUG00000003029	prpf8	68	100.000	ENSSLDG00000017096	prpf8	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000003029	prpf8	87	94.626	ENSSARG00000002892	PRPF8	87	94.626	Sorex_araneus
ENSSDUG00000003029	prpf8	100	97.651	ENSSPUG00000007463	PRPF8	100	97.651	Sphenodon_punctatus
ENSSDUG00000003029	prpf8	100	99.187	ENSSPAG00000015639	prpf8	100	99.187	Stegastes_partitus
ENSSDUG00000003029	prpf8	100	97.776	ENSSSCG00000017817	PRPF8	100	97.776	Sus_scrofa
ENSSDUG00000003029	prpf8	52	98.778	ENSTGUG00000015597	-	95	98.778	Taeniopygia_guttata
ENSSDUG00000003029	prpf8	100	97.861	ENSTGUG00000005648	-	100	97.861	Taeniopygia_guttata
ENSSDUG00000003029	prpf8	100	99.102	ENSTRUG00000015906	prpf8	100	99.102	Takifugu_rubripes
ENSSDUG00000003029	prpf8	95	99.582	ENSTNIG00000003460	prpf8	99	99.582	Tetraodon_nigroviridis
ENSSDUG00000003029	prpf8	93	98.979	ENSTBEG00000006431	PRPF8	93	98.979	Tupaia_belangeri
ENSSDUG00000003029	prpf8	100	97.177	ENSTTRG00000006869	PRPF8	100	97.177	Tursiops_truncatus
ENSSDUG00000003029	prpf8	54	96.593	ENSUAMG00000015644	-	96	96.593	Ursus_americanus
ENSSDUG00000003029	prpf8	100	97.519	ENSUMAG00000009385	PRPF8	100	97.519	Ursus_maritimus
ENSSDUG00000003029	prpf8	71	98.621	ENSVPAG00000006063	-	71	98.621	Vicugna_pacos
ENSSDUG00000003029	prpf8	100	97.776	ENSVVUG00000021695	PRPF8	99	97.776	Vulpes_vulpes
ENSSDUG00000003029	prpf8	100	97.649	ENSXETG00000022259	prpf8	100	97.649	Xenopus_tropicalis
ENSSDUG00000003029	prpf8	100	99.060	ENSXCOG00000012775	prpf8	100	99.060	Xiphophorus_couchianus
ENSSDUG00000003029	prpf8	100	99.018	ENSXMAG00000008505	prpf8	100	99.018	Xiphophorus_maculatus