EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000003389 (Gene tree)
Gene ID: 111216940
Gene Symbol: srsf7a
Alias: fb39b02|wu:fb39b02|zgc:77155
Full Name: serine/arginine-rich splicing factor 7-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 8265 bases
Position: chrBDQW01000036.1:1886876-1895140
Accession: 111216940
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000004550	RRM_1	PF00076.22	4.6e-16	1	1
ENSSDUP00000004557	RRM_1	PF00076.22	5.2e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000004652	-	1080	-	ENSSDUP00000004557	253 (aa)	-	UPI000C6FA516
ENSSDUT00000004645	-	2467	XM_022738603	ENSSDUP00000004550	239 (aa)	XP_022594324	UPI000BBE24EC

Gene Model

Click here to download ENSSDUG00000003389's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03040	Spliceosome	KEGG
sdu05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000003389's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000003389	srsf7a	54	71.212	ENSSDUG00000021338	srsf7b	80	74.783

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000003389	srsf7a	64	62.581	ENSG00000115875	SRSF7	87	76.522	Homo_sapiens
ENSSDUG00000003389	srsf7a	100	98.814	ENSAPOG00000023586	srsf7a	100	98.814	Acanthochromis_polyacanthus
ENSSDUG00000003389	srsf7a	100	98.814	ENSAOCG00000012705	srsf7a	100	98.814	Amphiprion_ocellaris
ENSSDUG00000003389	srsf7a	100	98.814	ENSAPEG00000017818	srsf7a	100	98.814	Amphiprion_percula
ENSSDUG00000003389	srsf7a	100	99.213	ENSATEG00000004691	srsf7a	100	99.213	Anabas_testudineus
ENSSDUG00000003389	srsf7a	100	98.425	ENSACLG00000014716	srsf7a	100	98.425	Astatotilapia_calliptera
ENSSDUG00000003389	srsf7a	64	62.581	ENSCJAG00000015185	SRSF7	84	76.522	Callithrix_jacchus
ENSSDUG00000003389	srsf7a	64	62.581	ENSCATG00000031728	SRSF7	84	76.522	Cercocebus_atys
ENSSDUG00000003389	srsf7a	64	62.581	ENSCANG00000040757	SRSF7	84	76.522	Colobus_angolensis_palliatus
ENSSDUG00000003389	srsf7a	55	95.420	ENSCSEG00000006378	srsf7a	92	95.420	Cynoglossus_semilaevis
ENSSDUG00000003389	srsf7a	59	56.738	ENSCVAG00000009865	-	56	75.294	Cyprinodon_variegatus
ENSSDUG00000003389	srsf7a	95	70.513	ENSDARG00000035325	srsf7a	85	95.161	Danio_rerio
ENSSDUG00000003389	srsf7a	63	53.086	ENSEBUG00000002677	-	56	67.442	Eptatretus_burgeri
ENSSDUG00000003389	srsf7a	53	58.696	ENSELUG00000014357	SRSF3	58	70.213	Esox_lucius
ENSSDUG00000003389	srsf7a	51	68.548	ENSELUG00000018155	srsf7b	83	73.043	Esox_lucius
ENSSDUG00000003389	srsf7a	54	93.023	ENSFHEG00000007159	srsf7a	63	96.522	Fundulus_heteroclitus
ENSSDUG00000003389	srsf7a	50	67.769	ENSFHEG00000023046	srsf7b	51	70.435	Fundulus_heteroclitus
ENSSDUG00000003389	srsf7a	52	67.717	ENSGAFG00000008856	srsf7b	84	70.085	Gambusia_affinis
ENSSDUG00000003389	srsf7a	64	62.581	ENSGGOG00000014620	SRSF7	84	76.522	Gorilla_gorilla
ENSSDUG00000003389	srsf7a	100	98.425	ENSHBUG00000001795	srsf7a	100	98.425	Haplochromis_burtoni
ENSSDUG00000003389	srsf7a	100	93.443	ENSHCOG00000016135	srsf7a	100	93.443	Hippocampus_comes
ENSSDUG00000003389	srsf7a	61	53.741	ENSHCOG00000017795	-	51	71.765	Hippocampus_comes
ENSSDUG00000003389	srsf7a	57	56.835	ENSJJAG00000020230	-	71	61.739	Jaculus_jaculus
ENSSDUG00000003389	srsf7a	92	62.443	ENSLACG00000018688	srsf7a	56	87.069	Latimeria_chalumnae
ENSSDUG00000003389	srsf7a	68	58.788	ENSLAFG00000005666	SRSF7	72	76.522	Loxodonta_africana
ENSSDUG00000003389	srsf7a	64	62.581	ENSMFAG00000001980	SRSF7	84	76.522	Macaca_fascicularis
ENSSDUG00000003389	srsf7a	60	65.517	ENSMMUG00000011025	SRSF7	59	73.333	Macaca_mulatta
ENSSDUG00000003389	srsf7a	64	62.581	ENSMNEG00000036669	SRSF7	59	73.333	Macaca_nemestrina
ENSSDUG00000003389	srsf7a	64	62.581	ENSMLEG00000038852	SRSF7	84	76.522	Mandrillus_leucophaeus
ENSSDUG00000003389	srsf7a	60	64.828	ENSMAMG00000017138	srsf7b	50	73.913	Mastacembelus_armatus
ENSSDUG00000003389	srsf7a	100	98.425	ENSMAMG00000017197	srsf7a	100	98.425	Mastacembelus_armatus
ENSSDUG00000003389	srsf7a	100	98.425	ENSMZEG00005024627	srsf7a	100	98.425	Maylandia_zebra
ENSSDUG00000003389	srsf7a	65	51.592	ENSMZEG00005016010	-	50	78.205	Maylandia_zebra
ENSSDUG00000003389	srsf7a	81	51.282	ENSMGAG00000007415	SRSF7	53	76.522	Meleagris_gallopavo
ENSSDUG00000003389	srsf7a	59	55.556	ENSMAUG00000021932	-	57	60.870	Mesocricetus_auratus
ENSSDUG00000003389	srsf7a	69	48.503	ENSMAUG00000011430	-	55	60.714	Mesocricetus_auratus
ENSSDUG00000003389	srsf7a	52	98.387	ENSMMOG00000005208	srsf7a	76	100.000	Mola_mola
ENSSDUG00000003389	srsf7a	100	96.850	ENSMALG00000012722	srsf7a	100	96.850	Monopterus_albus
ENSSDUG00000003389	srsf7a	67	98.148	ENSNBRG00000006601	srsf7a	75	99.130	Neolamprologus_brichardi
ENSSDUG00000003389	srsf7a	64	62.581	ENSNLEG00000016349	SRSF7	84	76.522	Nomascus_leucogenys
ENSSDUG00000003389	srsf7a	68	55.488	ENSORLG00015004309	srsf3b	51	75.294	Oryzias_latipes_hsok
ENSSDUG00000003389	srsf7a	61	52.381	ENSOMEG00000014893	srsf3b	64	70.103	Oryzias_melastigma
ENSSDUG00000003389	srsf7a	64	62.581	ENSPPAG00000017907	SRSF7	59	73.333	Pan_paniscus
ENSSDUG00000003389	srsf7a	64	62.581	ENSPTRG00000011851	SRSF7	55	77.876	Pan_troglodytes
ENSSDUG00000003389	srsf7a	64	62.581	ENSPANG00000018079	SRSF7	59	73.333	Papio_anubis
ENSSDUG00000003389	srsf7a	54	68.889	ENSPKIG00000017425	srsf7b	65	76.522	Paramormyrops_kingsleyae
ENSSDUG00000003389	srsf7a	62	52.349	ENSPKIG00000004949	srsf3a	71	58.519	Paramormyrops_kingsleyae
ENSSDUG00000003389	srsf7a	73	48.295	ENSPSIG00000004636	-	50	76.522	Pelodiscus_sinensis
ENSSDUG00000003389	srsf7a	52	66.667	ENSPMAG00000004472	srsf7a	54	72.642	Petromyzon_marinus
ENSSDUG00000003389	srsf7a	52	95.968	ENSPREG00000020685	srsf7a	98	95.968	Poecilia_reticulata
ENSSDUG00000003389	srsf7a	65	51.592	ENSPNYG00000013747	-	55	75.294	Pundamilia_nyererei
ENSSDUG00000003389	srsf7a	100	98.425	ENSPNYG00000005994	srsf7a	100	98.425	Pundamilia_nyererei
ENSSDUG00000003389	srsf7a	83	80.000	ENSPNAG00000000149	-	52	66.667	Pygocentrus_nattereri
ENSSDUG00000003389	srsf7a	60	65.517	ENSRBIG00000024695	SRSF7	59	73.333	Rhinopithecus_bieti
ENSSDUG00000003389	srsf7a	64	62.581	ENSSBOG00000025074	SRSF7	84	76.522	Saimiri_boliviensis_boliviensis
ENSSDUG00000003389	srsf7a	61	51.020	ENSSMAG00000000387	srsf3b	60	70.103	Scophthalmus_maximus
ENSSDUG00000003389	srsf7a	100	100.000	ENSSLDG00000007715	srsf7a	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000003389	srsf7a	50	72.727	ENSSPAG00000017204	srsf7b	82	74.783	Stegastes_partitus
ENSSDUG00000003389	srsf7a	54	98.450	ENSSPAG00000022192	srsf7a	99	99.194	Stegastes_partitus
ENSSDUG00000003389	srsf7a	100	96.047	ENSTRUG00000010529	srsf7a	100	96.047	Takifugu_rubripes
ENSSDUG00000003389	srsf7a	62	52.288	ENSVVUG00000006092	-	69	65.278	Vulpes_vulpes
ENSSDUG00000003389	srsf7a	51	96.748	ENSXCOG00000009381	srsf7a	97	96.748	Xiphophorus_couchianus