EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000003428 (Gene tree)
Gene ID: 111233237
Gene Symbol: cnot3b
Alias: cnot3|wu:fi20g07|zgc:55934
Full Name: CCR4-NOT transcription complex subunit 3-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 37558 bases
Position: chrBDQW01000381.1:1044285-1081842
Accession: 111233237
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000004598	Not3	PF04065.15	2.5e-95	1	1
ENSSDUP00000004598	NOT2_3_5	PF04153.18	1e-39	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000004693	-	7851	XM_022761005	ENSSDUP00000004598	936 (aa)	XP_022616726	UPI000BBE91DA

Gene Model

Click here to download ENSSDUG00000003428's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000003428's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000003428	cnot3b	74	94.444	ENSSDUG00000008181	cnot3a	93	94.444

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000003428	cnot3b	65	92.763	ENSG00000088038	CNOT3	100	94.330	Homo_sapiens
ENSSDUG00000003428	cnot3b	53	82.206	ENSAPOG00000015499	CNOT3	88	82.206	Acanthochromis_polyacanthus
ENSSDUG00000003428	cnot3b	65	98.630	ENSAPOG00000015002	cnot3b	96	98.630	Acanthochromis_polyacanthus
ENSSDUG00000003428	cnot3b	65	93.092	ENSAMEG00000004528	CNOT3	73	92.787	Ailuropoda_melanoleuca
ENSSDUG00000003428	cnot3b	66	94.643	ENSACIG00000003652	cnot3b	90	97.260	Amphilophus_citrinellus
ENSSDUG00000003428	cnot3b	76	92.857	ENSACIG00000006635	cnot3a	80	94.017	Amphilophus_citrinellus
ENSSDUG00000003428	cnot3b	97	82.346	ENSAOCG00000018385	-	99	86.284	Amphiprion_ocellaris
ENSSDUG00000003428	cnot3b	97	84.995	ENSAPEG00000002640	cnot3b	100	83.352	Amphiprion_percula
ENSSDUG00000003428	cnot3b	100	67.263	ENSATEG00000022737	cnot3a	100	68.619	Anabas_testudineus
ENSSDUG00000003428	cnot3b	100	90.755	ENSATEG00000015777	cnot3b	100	90.967	Anabas_testudineus
ENSSDUG00000003428	cnot3b	66	91.857	ENSACAG00000016085	CNOT3	88	92.434	Anolis_carolinensis
ENSSDUG00000003428	cnot3b	65	92.763	ENSANAG00000025756	CNOT3	75	92.459	Aotus_nancymaae
ENSSDUG00000003428	cnot3b	100	88.865	ENSACLG00000016702	cnot3b	100	87.699	Astatotilapia_calliptera
ENSSDUG00000003428	cnot3b	100	74.262	ENSAMXG00000009447	cnot3b	97	93.548	Astyanax_mexicanus
ENSSDUG00000003428	cnot3b	100	68.526	ENSAMXG00000012359	cnot3a	100	69.789	Astyanax_mexicanus
ENSSDUG00000003428	cnot3b	65	92.763	ENSBTAG00000014900	CNOT3	86	92.459	Bos_taurus
ENSSDUG00000003428	cnot3b	65	92.763	ENSCJAG00000001094	CNOT3	72	92.459	Callithrix_jacchus
ENSSDUG00000003428	cnot3b	71	80.109	ENSCAFG00000002699	CNOT3	73	92.459	Canis_familiaris
ENSSDUG00000003428	cnot3b	71	80.109	ENSCAFG00020018359	CNOT3	73	92.459	Canis_lupus_dingo
ENSSDUG00000003428	cnot3b	65	92.763	ENSTSYG00000008058	CNOT3	85	92.459	Carlito_syrichta
ENSSDUG00000003428	cnot3b	71	80.654	ENSCPOG00000020741	CNOT3	72	92.459	Cavia_porcellus
ENSSDUG00000003428	cnot3b	65	92.763	ENSCCAG00000036290	CNOT3	75	92.459	Cebus_capucinus
ENSSDUG00000003428	cnot3b	65	92.763	ENSCATG00000030324	CNOT3	72	92.459	Cercocebus_atys
ENSSDUG00000003428	cnot3b	65	92.763	ENSCLAG00000003302	CNOT3	100	86.585	Chinchilla_lanigera
ENSSDUG00000003428	cnot3b	65	92.763	ENSCSAG00000001900	CNOT3	72	92.459	Chlorocebus_sabaeus
ENSSDUG00000003428	cnot3b	82	71.601	ENSCPBG00000011655	CNOT3	88	93.115	Chrysemys_picta_bellii
ENSSDUG00000003428	cnot3b	87	58.947	ENSCING00000000293	-	68	67.355	Ciona_intestinalis
ENSSDUG00000003428	cnot3b	65	92.763	ENSCANG00000013408	CNOT3	72	92.459	Colobus_angolensis_palliatus
ENSSDUG00000003428	cnot3b	71	80.654	ENSCGRG00001000855	Cnot3	73	92.787	Cricetulus_griseus_chok1gshd
ENSSDUG00000003428	cnot3b	97	84.821	ENSCSEG00000016892	cnot3b	71	85.294	Cynoglossus_semilaevis
ENSSDUG00000003428	cnot3b	100	81.237	ENSCVAG00000022122	cnot3b	100	81.770	Cyprinodon_variegatus
ENSSDUG00000003428	cnot3b	100	67.687	ENSDARG00000007135	cnot3a	100	68.538	Danio_rerio
ENSSDUG00000003428	cnot3b	100	71.444	ENSDARG00000019842	cnot3b	100	71.383	Danio_rerio
ENSSDUG00000003428	cnot3b	65	92.434	ENSDNOG00000045972	CNOT3	73	92.131	Dasypus_novemcinctus
ENSSDUG00000003428	cnot3b	65	92.763	ENSDORG00000008021	Cnot3	100	81.609	Dipodomys_ordii
ENSSDUG00000003428	cnot3b	51	100.000	ENSETEG00000006305	CNOT3	60	100.000	Echinops_telfairi
ENSSDUG00000003428	cnot3b	65	70.779	ENSEBUG00000010437	cnot3a	82	68.182	Eptatretus_burgeri
ENSSDUG00000003428	cnot3b	65	92.763	ENSEASG00005021591	CNOT3	84	92.459	Equus_asinus_asinus
ENSSDUG00000003428	cnot3b	65	92.763	ENSECAG00000023181	CNOT3	84	92.459	Equus_caballus
ENSSDUG00000003428	cnot3b	100	64.184	ENSELUG00000014743	cnot3a	100	66.051	Esox_lucius
ENSSDUG00000003428	cnot3b	100	76.354	ENSELUG00000000953	cnot3b	100	75.131	Esox_lucius
ENSSDUG00000003428	cnot3b	71	80.381	ENSFCAG00000014042	CNOT3	73	92.459	Felis_catus
ENSSDUG00000003428	cnot3b	100	80.380	ENSFHEG00000001696	cnot3b	100	79.557	Fundulus_heteroclitus
ENSSDUG00000003428	cnot3b	59	94.444	ENSFHEG00000023166	cnot3a	74	94.444	Fundulus_heteroclitus
ENSSDUG00000003428	cnot3b	94	64.189	ENSGMOG00000005365	cnot3a	98	63.111	Gadus_morhua
ENSSDUG00000003428	cnot3b	100	82.585	ENSGAFG00000003459	cnot3b	100	82.051	Gambusia_affinis
ENSSDUG00000003428	cnot3b	55	63.006	ENSGAFG00000013094	cnot3a	100	66.562	Gambusia_affinis
ENSSDUG00000003428	cnot3b	81	72.340	ENSGAGG00000012677	CNOT3	87	91.743	Gopherus_agassizii
ENSSDUG00000003428	cnot3b	65	92.763	ENSGGOG00000012996	CNOT3	75	92.459	Gorilla_gorilla
ENSSDUG00000003428	cnot3b	99	79.082	ENSHBUG00000019699	cnot3b	99	78.228	Haplochromis_burtoni
ENSSDUG00000003428	cnot3b	65	92.763	ENSHGLG00000008821	CNOT3	100	81.609	Heterocephalus_glaber_female
ENSSDUG00000003428	cnot3b	58	84.291	ENSHGLG00100006181	CNOT3	100	81.609	Heterocephalus_glaber_male
ENSSDUG00000003428	cnot3b	51	86.175	ENSHCOG00000020968	cnot3a	100	66.840	Hippocampus_comes
ENSSDUG00000003428	cnot3b	87	79.630	ENSIPUG00000000167	cnot3	100	62.566	Ictalurus_punctatus
ENSSDUG00000003428	cnot3b	100	68.124	ENSIPUG00000009046	cnot3b	100	68.399	Ictalurus_punctatus
ENSSDUG00000003428	cnot3b	65	92.763	ENSSTOG00000028248	CNOT3	85	92.459	Ictidomys_tridecemlineatus
ENSSDUG00000003428	cnot3b	65	93.092	ENSJJAG00000014594	Cnot3	100	81.609	Jaculus_jaculus
ENSSDUG00000003428	cnot3b	100	66.667	ENSKMAG00000004863	cnot3a	100	81.159	Kryptolebias_marmoratus
ENSSDUG00000003428	cnot3b	100	86.567	ENSKMAG00000018723	cnot3b	100	87.633	Kryptolebias_marmoratus
ENSSDUG00000003428	cnot3b	97	85.320	ENSLBEG00000018278	cnot3b	99	86.093	Labrus_bergylta
ENSSDUG00000003428	cnot3b	50	89.453	ENSLBEG00000017296	cnot3a	91	89.453	Labrus_bergylta
ENSSDUG00000003428	cnot3b	66	92.763	ENSLACG00000009742	CNOT3	88	92.459	Latimeria_chalumnae
ENSSDUG00000003428	cnot3b	52	97.386	ENSLOCG00000000005	cnot3b	79	97.386	Lepisosteus_oculatus
ENSSDUG00000003428	cnot3b	65	91.803	ENSLAFG00000022133	CNOT3	85	91.503	Loxodonta_africana
ENSSDUG00000003428	cnot3b	65	92.763	ENSMFAG00000040073	CNOT3	72	92.459	Macaca_fascicularis
ENSSDUG00000003428	cnot3b	58	92.437	ENSMMUG00000009698	CNOT3	100	99.020	Macaca_mulatta
ENSSDUG00000003428	cnot3b	65	92.763	ENSMNEG00000036750	CNOT3	72	92.459	Macaca_nemestrina
ENSSDUG00000003428	cnot3b	65	92.763	ENSMLEG00000036579	CNOT3	72	92.459	Mandrillus_leucophaeus
ENSSDUG00000003428	cnot3b	100	92.521	ENSMAMG00000019357	cnot3b	100	92.094	Mastacembelus_armatus
ENSSDUG00000003428	cnot3b	100	89.468	ENSMZEG00005002466	cnot3b	100	88.617	Maylandia_zebra
ENSSDUG00000003428	cnot3b	71	80.654	ENSMAUG00000014996	Cnot3	73	92.787	Mesocricetus_auratus
ENSSDUG00000003428	cnot3b	65	92.763	ENSMICG00000002370	CNOT3	84	92.459	Microcebus_murinus
ENSSDUG00000003428	cnot3b	68	94.444	ENSMMOG00000013086	cnot3b	72	97.235	Mola_mola
ENSSDUG00000003428	cnot3b	80	88.889	ENSMMOG00000016446	cnot3a	91	88.889	Mola_mola
ENSSDUG00000003428	cnot3b	58	92.763	ENSMODG00000004066	CNOT3	73	92.459	Monodelphis_domestica
ENSSDUG00000003428	cnot3b	100	67.678	ENSMALG00000009204	cnot3a	100	66.216	Monopterus_albus
ENSSDUG00000003428	cnot3b	69	97.717	ENSMALG00000004936	cnot3b	92	97.717	Monopterus_albus
ENSSDUG00000003428	cnot3b	65	93.092	MGP_CAROLIEiJ_G0029095	Cnot3	100	97.000	Mus_caroli
ENSSDUG00000003428	cnot3b	65	93.092	ENSMUSG00000035632	Cnot3	100	97.000	Mus_musculus
ENSSDUG00000003428	cnot3b	71	80.381	MGP_PahariEiJ_G0020964	Cnot3	100	97.000	Mus_pahari
ENSSDUG00000003428	cnot3b	65	93.092	MGP_SPRETEiJ_G0030148	Cnot3	100	97.000	Mus_spretus
ENSSDUG00000003428	cnot3b	65	92.763	ENSMPUG00000010352	CNOT3	85	92.459	Mustela_putorius_furo
ENSSDUG00000003428	cnot3b	65	92.763	ENSNGAG00000013266	Cnot3	85	92.459	Nannospalax_galili
ENSSDUG00000003428	cnot3b	82	91.275	ENSNBRG00000003336	cnot3b	99	91.150	Neolamprologus_brichardi
ENSSDUG00000003428	cnot3b	65	92.763	ENSNLEG00000006272	CNOT3	84	92.459	Nomascus_leucogenys
ENSSDUG00000003428	cnot3b	69	81.564	ENSODEG00000000705	CNOT3	100	89.873	Octodon_degus
ENSSDUG00000003428	cnot3b	100	89.765	ENSONIG00000007047	cnot3b	100	88.913	Oreochromis_niloticus
ENSSDUG00000003428	cnot3b	65	92.763	ENSOCUG00000007691	CNOT3	85	92.459	Oryctolagus_cuniculus
ENSSDUG00000003428	cnot3b	100	82.692	ENSORLG00020005779	cnot3b	100	81.983	Oryzias_latipes_hni
ENSSDUG00000003428	cnot3b	100	82.585	ENSORLG00015019021	cnot3b	100	82.909	Oryzias_latipes_hsok
ENSSDUG00000003428	cnot3b	63	84.232	ENSOMEG00000010309	cnot3a	100	65.907	Oryzias_melastigma
ENSSDUG00000003428	cnot3b	100	82.109	ENSOMEG00000015557	cnot3b	100	82.535	Oryzias_melastigma
ENSSDUG00000003428	cnot3b	69	85.970	ENSOGAG00000006945	CNOT3	73	92.459	Otolemur_garnettii
ENSSDUG00000003428	cnot3b	65	64.610	ENSOARG00000002981	CNOT3	67	83.254	Ovis_aries
ENSSDUG00000003428	cnot3b	65	92.763	ENSPPAG00000002748	CNOT3	75	92.459	Pan_paniscus
ENSSDUG00000003428	cnot3b	71	80.381	ENSPPRG00000011705	CNOT3	73	92.459	Panthera_pardus
ENSSDUG00000003428	cnot3b	60	92.953	ENSPTIG00000008781	CNOT3	93	92.953	Panthera_tigris_altaica
ENSSDUG00000003428	cnot3b	65	92.763	ENSPTRG00000011444	CNOT3	75	92.459	Pan_troglodytes
ENSSDUG00000003428	cnot3b	65	92.763	ENSPTRG00000046717	-	75	92.459	Pan_troglodytes
ENSSDUG00000003428	cnot3b	65	92.763	ENSPANG00000009375	CNOT3	72	92.459	Papio_anubis
ENSSDUG00000003428	cnot3b	100	67.762	ENSPKIG00000011733	CNOT3	100	67.316	Paramormyrops_kingsleyae
ENSSDUG00000003428	cnot3b	97	68.392	ENSPKIG00000015967	-	96	92.430	Paramormyrops_kingsleyae
ENSSDUG00000003428	cnot3b	98	70.690	ENSPMGG00000022539	cnot3b	99	69.840	Periophthalmus_magnuspinnatus
ENSSDUG00000003428	cnot3b	75	77.330	ENSPEMG00000024185	Cnot3	73	92.787	Peromyscus_maniculatus_bairdii
ENSSDUG00000003428	cnot3b	66	92.434	ENSPCIG00000023018	CNOT3	93	92.520	Phascolarctos_cinereus
ENSSDUG00000003428	cnot3b	100	82.692	ENSPFOG00000007168	cnot3b	100	83.333	Poecilia_formosa
ENSSDUG00000003428	cnot3b	72	90.397	ENSPFOG00000008693	cnot3a	86	88.462	Poecilia_formosa
ENSSDUG00000003428	cnot3b	100	82.692	ENSPLAG00000013457	cnot3b	100	83.333	Poecilia_latipinna
ENSSDUG00000003428	cnot3b	100	84.081	ENSPMEG00000010184	cnot3b	100	83.226	Poecilia_mexicana
ENSSDUG00000003428	cnot3b	99	77.790	ENSPREG00000000662	cnot3b	97	78.440	Poecilia_reticulata
ENSSDUG00000003428	cnot3b	62	93.617	ENSPREG00000007592	cnot3a	89	88.426	Poecilia_reticulata
ENSSDUG00000003428	cnot3b	50	71.154	ENSPREG00000000766	-	99	74.538	Poecilia_reticulata
ENSSDUG00000003428	cnot3b	65	92.434	ENSPPYG00000010372	CNOT3	72	92.131	Pongo_abelii
ENSSDUG00000003428	cnot3b	51	94.915	ENSPCAG00000011999	CNOT3	56	94.915	Procavia_capensis
ENSSDUG00000003428	cnot3b	72	80.435	ENSPCOG00000017673	CNOT3	89	92.459	Propithecus_coquereli
ENSSDUG00000003428	cnot3b	65	91.776	ENSPVAG00000015564	CNOT3	70	91.475	Pteropus_vampyrus
ENSSDUG00000003428	cnot3b	99	80.149	ENSPNYG00000003358	cnot3b	99	79.296	Pundamilia_nyererei
ENSSDUG00000003428	cnot3b	100	69.223	ENSPNAG00000017679	cnot3a	100	68.875	Pygocentrus_nattereri
ENSSDUG00000003428	cnot3b	100	74.814	ENSPNAG00000027459	cnot3b	100	74.047	Pygocentrus_nattereri
ENSSDUG00000003428	cnot3b	71	80.381	ENSRNOG00000053234	Cnot3	73	92.787	Rattus_norvegicus
ENSSDUG00000003428	cnot3b	72	80.707	ENSRBIG00000031025	CNOT3	72	92.459	Rhinopithecus_bieti
ENSSDUG00000003428	cnot3b	72	80.978	ENSRROG00000003872	CNOT3	73	92.459	Rhinopithecus_roxellana
ENSSDUG00000003428	cnot3b	65	92.763	ENSSBOG00000030268	CNOT3	75	92.459	Saimiri_boliviensis_boliviensis
ENSSDUG00000003428	cnot3b	100	74.070	ENSSFOG00015000248	cnot3	100	71.744	Scleropages_formosus
ENSSDUG00000003428	cnot3b	100	72.000	ENSSFOG00015019203	-	100	72.152	Scleropages_formosus
ENSSDUG00000003428	cnot3b	100	90.148	ENSSMAG00000016031	cnot3b	100	89.831	Scophthalmus_maximus
ENSSDUG00000003428	cnot3b	100	99.786	ENSSLDG00000014376	cnot3b	100	99.786	Seriola_lalandi_dorsalis
ENSSDUG00000003428	cnot3b	76	75.921	ENSSPUG00000008510	CNOT3	89	92.459	Sphenodon_punctatus
ENSSDUG00000003428	cnot3b	84	90.625	ENSSPAG00000003858	cnot3a	98	66.956	Stegastes_partitus
ENSSDUG00000003428	cnot3b	100	93.162	ENSSPAG00000001429	cnot3b	100	92.949	Stegastes_partitus
ENSSDUG00000003428	cnot3b	65	92.763	ENSSSCG00000003264	CNOT3	84	92.459	Sus_scrofa
ENSSDUG00000003428	cnot3b	80	82.800	ENSTRUG00000007248	cnot3b	91	93.717	Takifugu_rubripes
ENSSDUG00000003428	cnot3b	94	81.398	ENSTNIG00000005663	cnot3b	100	79.932	Tetraodon_nigroviridis
ENSSDUG00000003428	cnot3b	65	93.092	ENSUAMG00000005234	CNOT3	73	92.787	Ursus_americanus
ENSSDUG00000003428	cnot3b	67	91.398	ENSUMAG00000010934	CNOT3	85	92.857	Ursus_maritimus
ENSSDUG00000003428	cnot3b	71	80.109	ENSVVUG00000008239	CNOT3	80	92.459	Vulpes_vulpes
ENSSDUG00000003428	cnot3b	74	91.176	ENSXETG00000003166	cnot3	88	91.586	Xenopus_tropicalis
ENSSDUG00000003428	cnot3b	71	80.412	ENSXCOG00000019460	cnot3a	100	64.632	Xiphophorus_couchianus
ENSSDUG00000003428	cnot3b	97	78.761	ENSXCOG00000018976	cnot3b	99	77.901	Xiphophorus_couchianus
ENSSDUG00000003428	cnot3b	100	83.369	ENSXMAG00000014176	cnot3b	100	82.623	Xiphophorus_maculatus