EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000003476 (Gene tree)
Gene ID: 111227599
Gene Symbol: -
Alias: im:7148349|si:ch211-125c5.1
Full Name: spen family transcriptional repressor
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 30762 bases
Position: chrBDQW01000190.1:1152427-1183188
Accession: 111227599
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000004693	RRM_5	PF13893.6	1e-07	1	2
ENSSDUP00000004693	RRM_5	PF13893.6	1e-07	2	2
ENSSDUP00000004675	RRM_5	PF13893.6	8.9e-07	1	2
ENSSDUP00000004675	RRM_5	PF13893.6	8.9e-07	2	2
ENSSDUP00000004729	RRM_5	PF13893.6	1.1e-06	1	2
ENSSDUP00000004729	RRM_5	PF13893.6	1.1e-06	2	2
ENSSDUP00000004693	RRM_1	PF00076.22	1.5e-40	1	3
ENSSDUP00000004693	RRM_1	PF00076.22	1.5e-40	2	3
ENSSDUP00000004693	RRM_1	PF00076.22	1.5e-40	3	3
ENSSDUP00000004729	RRM_1	PF00076.22	3.2e-31	1	2
ENSSDUP00000004729	RRM_1	PF00076.22	3.2e-31	2	2
ENSSDUP00000004675	RRM_1	PF00076.22	8.1e-27	1	2
ENSSDUP00000004675	RRM_1	PF00076.22	8.1e-27	2	2
ENSSDUP00000004769	RRM_1	PF00076.22	1.3e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000004824	-	13380	-	ENSSDUP00000004729	3530 (aa)	-	-
ENSSDUT00000004771	-	12635	-	ENSSDUP00000004675	3472 (aa)	-	-
ENSSDUT00000004866	-	873	-	ENSSDUP00000004769	290 (aa)	-	-
ENSSDUT00000004789	-	13248	XM_022753166	ENSSDUP00000004693	3540 (aa)	XP_022608887	UPI000BBF0D8F

Gene Model

Click here to download ENSSDUG00000003476's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000003476's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000003476	-	97	76.733	ENSSDUG00000008416	si:ch1073-335m2.2	99	80.541

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000003476	-	90	76.030	ENSG00000065526	SPEN	85	91.667	Homo_sapiens
ENSSDUG00000003476	-	98	79.679	ENSAPOG00000011411	si:ch1073-335m2.2	100	80.541	Acanthochromis_polyacanthus
ENSSDUG00000003476	-	100	96.552	ENSAPOG00000009853	-	100	96.552	Acanthochromis_polyacanthus
ENSSDUG00000003476	-	91	75.093	ENSAMEG00000011817	SPEN	96	81.461	Ailuropoda_melanoleuca
ENSSDUG00000003476	-	100	87.570	ENSAOCG00000014505	-	100	87.570	Amphiprion_ocellaris
ENSSDUG00000003476	-	85	74.379	ENSAOCG00000008077	si:ch1073-335m2.2	99	73.826	Amphiprion_ocellaris
ENSSDUG00000003476	-	97	78.125	ENSAPEG00000013515	si:ch1073-335m2.2	99	80.541	Amphiprion_percula
ENSSDUG00000003476	-	100	87.461	ENSAPEG00000010288	-	100	87.461	Amphiprion_percula
ENSSDUG00000003476	-	100	87.328	ENSATEG00000005627	-	100	87.468	Anabas_testudineus
ENSSDUG00000003476	-	98	79.679	ENSATEG00000007674	si:ch1073-335m2.2	100	80.541	Anabas_testudineus
ENSSDUG00000003476	-	81	72.917	ENSAPLG00000012618	SPEN	99	79.470	Anas_platyrhynchos
ENSSDUG00000003476	-	81	67.181	ENSACAG00000013761	SPEN	99	73.333	Anolis_carolinensis
ENSSDUG00000003476	-	96	78.022	ENSACLG00000021433	si:ch1073-335m2.2	98	84.615	Astatotilapia_calliptera
ENSSDUG00000003476	-	97	98.000	ENSACLG00000016922	-	100	83.993	Astatotilapia_calliptera
ENSSDUG00000003476	-	86	86.592	ENSAMXG00000012485	spen	100	56.398	Astyanax_mexicanus
ENSSDUG00000003476	-	91	75.093	ENSBTAG00000018729	SPEN	88	81.461	Bos_taurus
ENSSDUG00000003476	-	90	75.655	ENSCJAG00000008527	SPEN	91	82.584	Callithrix_jacchus
ENSSDUG00000003476	-	91	75.836	ENSCAFG00000016132	-	92	82.584	Canis_familiaris
ENSSDUG00000003476	-	91	75.836	ENSCHIG00000025070	SPEN	89	82.584	Capra_hircus
ENSSDUG00000003476	-	92	43.631	ENSTSYG00000036016	SPEN	86	47.671	Carlito_syrichta
ENSSDUG00000003476	-	81	73.222	ENSCAPG00000013803	SPEN	96	82.514	Cavia_aperea
ENSSDUG00000003476	-	80	73.109	ENSCPOG00000014036	SPEN	92	82.514	Cavia_porcellus
ENSSDUG00000003476	-	91	75.465	ENSCCAG00000020258	SPEN	91	82.584	Cebus_capucinus
ENSSDUG00000003476	-	80	73.109	ENSCLAG00000002018	SPEN	79	79.333	Chinchilla_lanigera
ENSSDUG00000003476	-	90	76.030	ENSCSAG00000000841	SPEN	86	82.584	Chlorocebus_sabaeus
ENSSDUG00000003476	-	91	75.465	ENSCPBG00000010477	SPEN	99	82.584	Chrysemys_picta_bellii
ENSSDUG00000003476	-	88	69.732	ENSCANG00000034547	SPEN	86	81.967	Colobus_angolensis_palliatus
ENSSDUG00000003476	-	90	76.779	ENSCGRG00001007725	Spen	88	83.146	Cricetulus_griseus_chok1gshd
ENSSDUG00000003476	-	71	72.642	ENSCGRG00000010581	Spen	77	80.000	Cricetulus_griseus_crigri
ENSSDUG00000003476	-	87	96.067	ENSCSEG00000003915	-	100	81.846	Cynoglossus_semilaevis
ENSSDUG00000003476	-	87	95.531	ENSCVAG00000016346	-	100	77.075	Cyprinodon_variegatus
ENSSDUG00000003476	-	97	77.157	ENSCVAG00000009075	si:ch1073-335m2.2	99	80.000	Cyprinodon_variegatus
ENSSDUG00000003476	-	90	69.968	ENSDARG00000074245	spen	100	92.593	Danio_rerio
ENSSDUG00000003476	-	91	76.119	ENSDNOG00000041948	SPEN	96	83.146	Dasypus_novemcinctus
ENSSDUG00000003476	-	81	72.727	ENSDORG00000023909	Spen	96	78.621	Dipodomys_ordii
ENSSDUG00000003476	-	80	72.803	ENSETEG00000016692	-	55	79.333	Echinops_telfairi
ENSSDUG00000003476	-	59	63.243	ENSEBUG00000005464	-	63	66.667	Eptatretus_burgeri
ENSSDUG00000003476	-	94	86.765	ENSEASG00005015911	SPEN	96	82.584	Equus_asinus_asinus
ENSSDUG00000003476	-	94	86.765	ENSECAG00000008833	SPEN	96	82.584	Equus_caballus
ENSSDUG00000003476	-	90	74.532	ENSEEUG00000010255	SPEN	66	88.372	Erinaceus_europaeus
ENSSDUG00000003476	-	97	82.873	ENSELUG00000007726	si:ch1073-335m2.2	98	82.873	Esox_lucius
ENSSDUG00000003476	-	89	46.256	ENSFALG00000003551	SPEN	100	45.981	Ficedula_albicollis
ENSSDUG00000003476	-	79	72.532	ENSFDAG00000010212	SPEN	96	78.621	Fukomys_damarensis
ENSSDUG00000003476	-	90	91.221	ENSFHEG00000013136	-	88	96.629	Fundulus_heteroclitus
ENSSDUG00000003476	-	99	75.472	ENSFHEG00000004544	si:ch1073-335m2.2	100	81.622	Fundulus_heteroclitus
ENSSDUG00000003476	-	94	74.874	ENSGMOG00000008156	si:ch1073-335m2.2	97	79.651	Gadus_morhua
ENSSDUG00000003476	-	97	90.761	ENSGMOG00000008397	-	98	92.179	Gadus_morhua
ENSSDUG00000003476	-	91	75.465	ENSGALG00000036932	SPEN	99	82.584	Gallus_gallus
ENSSDUG00000003476	-	98	75.490	ENSGAFG00000021570	si:ch1073-335m2.2	99	80.233	Gambusia_affinis
ENSSDUG00000003476	-	96	97.207	ENSGAFG00000015819	-	90	91.985	Gambusia_affinis
ENSSDUG00000003476	-	91	67.424	ENSGACG00000001176	si:ch1073-335m2.2	71	80.233	Gasterosteus_aculeatus
ENSSDUG00000003476	-	90	92.453	ENSGACG00000005341	-	100	80.180	Gasterosteus_aculeatus
ENSSDUG00000003476	-	91	75.465	ENSGAGG00000020785	SPEN	99	82.584	Gopherus_agassizii
ENSSDUG00000003476	-	94	84.615	ENSHBUG00000023253	si:ch1073-335m2.2	98	84.615	Haplochromis_burtoni
ENSSDUG00000003476	-	97	97.000	ENSHBUG00000020626	-	100	84.101	Haplochromis_burtoni
ENSSDUG00000003476	-	90	75.940	ENSHGLG00000019259	SPEN	79	82.584	Heterocephalus_glaber_female
ENSSDUG00000003476	-	79	71.674	ENSHGLG00100019294	SPEN	75	81.868	Heterocephalus_glaber_male
ENSSDUG00000003476	-	90	77.863	ENSHCOG00000002791	-	90	77.863	Hippocampus_comes
ENSSDUG00000003476	-	95	77.536	ENSHCOG00000006004	si:ch1073-335m2.2	99	77.536	Hippocampus_comes
ENSSDUG00000003476	-	86	87.222	ENSIPUG00000021668	spen	100	54.573	Ictalurus_punctatus
ENSSDUG00000003476	-	97	67.265	ENSIPUG00000018212	si:ch1073-335m2.2	99	76.087	Ictalurus_punctatus
ENSSDUG00000003476	-	79	72.650	ENSSTOG00000021428	SPEN	97	78.621	Ictidomys_tridecemlineatus
ENSSDUG00000003476	-	90	76.404	ENSJJAG00000010882	Spen	88	83.146	Jaculus_jaculus
ENSSDUG00000003476	-	97	77.157	ENSKMAG00000021725	si:ch1073-335m2.2	77	80.233	Kryptolebias_marmoratus
ENSSDUG00000003476	-	97	96.111	ENSKMAG00000003882	-	100	80.623	Kryptolebias_marmoratus
ENSSDUG00000003476	-	90	85.057	ENSLBEG00000019151	-	87	94.444	Labrus_bergylta
ENSSDUG00000003476	-	91	66.288	ENSLBEG00000020855	si:ch1073-335m2.2	99	82.840	Labrus_bergylta
ENSSDUG00000003476	-	86	80.113	ENSLBEG00000019129	-	100	80.180	Labrus_bergylta
ENSSDUG00000003476	-	89	74.436	ENSLACG00000003258	SPEN	99	83.146	Latimeria_chalumnae
ENSSDUG00000003476	-	97	85.517	ENSLOCG00000007896	si:ch1073-335m2.2	97	85.517	Lepisosteus_oculatus
ENSSDUG00000003476	-	90	68.165	ENSLAFG00000004524	SPEN	85	81.967	Loxodonta_africana
ENSSDUG00000003476	-	100	96.897	ENSMAMG00000014536	-	100	96.897	Mastacembelus_armatus
ENSSDUG00000003476	-	98	73.913	ENSMAMG00000023870	si:ch1073-335m2.2	100	80.000	Mastacembelus_armatus
ENSSDUG00000003476	-	96	78.022	ENSMZEG00005011762	si:ch1073-335m2.2	98	84.615	Maylandia_zebra
ENSSDUG00000003476	-	91	82.373	ENSMZEG00005021491	-	99	82.347	Maylandia_zebra
ENSSDUG00000003476	-	91	75.465	ENSMGAG00000005180	-	98	82.584	Meleagris_gallopavo
ENSSDUG00000003476	-	90	76.404	ENSMAUG00000008318	Spen	96	82.584	Mesocricetus_auratus
ENSSDUG00000003476	-	90	75.655	ENSMICG00000030994	SPEN	96	82.022	Microcebus_murinus
ENSSDUG00000003476	-	90	94.253	ENSMMOG00000017059	-	90	94.253	Mola_mola
ENSSDUG00000003476	-	94	75.521	ENSMMOG00000021742	si:ch1073-335m2.2	96	80.814	Mola_mola
ENSSDUG00000003476	-	91	75.373	ENSMODG00000003411	SPEN	99	82.584	Monodelphis_domestica
ENSSDUG00000003476	-	100	87.903	ENSMALG00000008625	-	100	87.932	Monopterus_albus
ENSSDUG00000003476	-	91	75.836	MGP_CAROLIEiJ_G0026745	Spen	89	82.022	Mus_caroli
ENSSDUG00000003476	-	91	76.208	ENSMUSG00000040761	Spen	97	82.584	Mus_musculus
ENSSDUG00000003476	-	90	76.030	MGP_PahariEiJ_G0029076	Spen	97	82.022	Mus_pahari
ENSSDUG00000003476	-	91	75.836	MGP_SPRETEiJ_G0027724	Spen	97	82.022	Mus_spretus
ENSSDUG00000003476	-	99	45.036	ENSMPUG00000016317	SPEN	96	74.545	Mustela_putorius_furo
ENSSDUG00000003476	-	95	88.172	ENSMLUG00000010144	SPEN	94	88.172	Myotis_lucifugus
ENSSDUG00000003476	-	90	76.030	ENSNGAG00000000641	Spen	72	82.584	Nannospalax_galili
ENSSDUG00000003476	-	86	81.981	ENSNBRG00000022090	-	100	81.954	Neolamprologus_brichardi
ENSSDUG00000003476	-	96	78.571	ENSNBRG00000005733	si:ch1073-335m2.2	98	84.615	Neolamprologus_brichardi
ENSSDUG00000003476	-	91	84.375	ENSMEUG00000002422	SPEN	90	84.375	Notamacropus_eugenii
ENSSDUG00000003476	-	80	73.640	ENSOPRG00000015800	SPEN	85	80.000	Ochotona_princeps
ENSSDUG00000003476	-	90	75.940	ENSODEG00000016644	SPEN	99	82.584	Octodon_degus
ENSSDUG00000003476	-	90	92.830	ENSONIG00000006573	-	99	88.758	Oreochromis_niloticus
ENSSDUG00000003476	-	81	71.667	ENSOANG00000004165	-	99	79.019	Ornithorhynchus_anatinus
ENSSDUG00000003476	-	90	61.710	ENSOCUG00000010840	SPEN	96	68.667	Oryctolagus_cuniculus
ENSSDUG00000003476	-	89	66.912	ENSORLG00000028894	-	100	66.816	Oryzias_latipes
ENSSDUG00000003476	-	89	67.471	ENSORLG00020007735	-	100	67.375	Oryzias_latipes_hni
ENSSDUG00000003476	-	95	83.333	ENSORLG00015005537	si:ch1073-335m2.2	75	75.401	Oryzias_latipes_hsok
ENSSDUG00000003476	-	100	69.443	ENSORLG00015022085	-	100	69.330	Oryzias_latipes_hsok
ENSSDUG00000003476	-	88	92.222	ENSOMEG00000007639	-	100	69.356	Oryzias_melastigma
ENSSDUG00000003476	-	99	59.498	ENSOMEG00000004509	si:ch1073-335m2.2	99	84.049	Oryzias_melastigma
ENSSDUG00000003476	-	90	76.030	ENSOGAG00000025110	SPEN	96	82.584	Otolemur_garnettii
ENSSDUG00000003476	-	88	70.229	ENSOARG00000008477	SPEN	96	79.333	Ovis_aries
ENSSDUG00000003476	-	97	100.000	ENSPKIG00000010492	si:ch1073-335m2.2	100	100.000	Paramormyrops_kingsleyae
ENSSDUG00000003476	-	90	82.510	ENSPKIG00000002617	SPEN	90	82.510	Paramormyrops_kingsleyae
ENSSDUG00000003476	-	81	72.727	ENSPSIG00000008026	SPEN	99	79.470	Pelodiscus_sinensis
ENSSDUG00000003476	-	89	67.925	ENSPEMG00000022997	Spen	97	77.931	Peromyscus_maniculatus_bairdii
ENSSDUG00000003476	-	90	91.321	ENSPFOG00000024806	-	99	88.384	Poecilia_formosa
ENSSDUG00000003476	-	98	77.665	ENSPFOG00000017986	si:ch1073-335m2.2	99	80.233	Poecilia_formosa
ENSSDUG00000003476	-	94	97.207	ENSPLAG00000001398	-	94	91.987	Poecilia_latipinna
ENSSDUG00000003476	-	98	77.665	ENSPLAG00000016625	si:ch1073-335m2.2	99	80.233	Poecilia_latipinna
ENSSDUG00000003476	-	96	96.648	ENSPMEG00000006764	-	90	91.603	Poecilia_mexicana
ENSSDUG00000003476	-	98	77.665	ENSPMEG00000002674	si:ch1073-335m2.2	99	80.233	Poecilia_mexicana
ENSSDUG00000003476	-	98	77.720	ENSPREG00000005357	si:ch1073-335m2.2	99	80.233	Poecilia_reticulata
ENSSDUG00000003476	-	96	96.648	ENSPREG00000010399	-	90	91.603	Poecilia_reticulata
ENSSDUG00000003476	-	89	71.552	ENSPCAG00000009543	SPEN	76	81.421	Procavia_capensis
ENSSDUG00000003476	-	90	75.281	ENSPCOG00000021735	SPEN	96	82.022	Propithecus_coquereli
ENSSDUG00000003476	-	91	75.465	ENSPVAG00000013794	SPEN	69	82.022	Pteropus_vampyrus
ENSSDUG00000003476	-	96	78.022	ENSPNYG00000009042	si:ch1073-335m2.2	98	84.615	Pundamilia_nyererei
ENSSDUG00000003476	-	97	98.000	ENSPNYG00000012379	-	100	84.129	Pundamilia_nyererei
ENSSDUG00000003476	-	98	72.464	ENSPNAG00000011452	si:ch1073-335m2.2	100	80.000	Pygocentrus_nattereri
ENSSDUG00000003476	-	86	88.136	ENSPNAG00000020795	spen	87	83.333	Pygocentrus_nattereri
ENSSDUG00000003476	-	81	73.140	ENSRNOG00000033556	Spen	97	79.470	Rattus_norvegicus
ENSSDUG00000003476	-	83	71.255	ENSSHAG00000004960	SPEN	99	79.333	Sarcophilus_harrisii
ENSSDUG00000003476	-	88	66.667	ENSSFOG00015007131	si:ch1073-335m2.2	100	57.580	Scleropages_formosus
ENSSDUG00000003476	-	90	73.510	ENSSFOG00015010267	si:ch1073-335m2.2	100	56.194	Scleropages_formosus
ENSSDUG00000003476	-	94	75.369	ENSSMAG00000000125	si:ch1073-335m2.2	100	79.891	Scophthalmus_maximus
ENSSDUG00000003476	-	100	88.595	ENSSMAG00000008996	-	100	88.595	Scophthalmus_maximus
ENSSDUG00000003476	-	96	76.355	ENSSLDG00000023347	si:ch1073-335m2.2	99	80.541	Seriola_lalandi_dorsalis
ENSSDUG00000003476	-	100	100.000	ENSSLDG00000012950	-	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000003476	-	89	45.261	ENSSPUG00000001866	-	100	45.125	Sphenodon_punctatus
ENSSDUG00000003476	-	100	88.389	ENSSPAG00000006014	-	100	88.220	Stegastes_partitus
ENSSDUG00000003476	-	98	80.645	ENSSPAG00000012454	si:ch1073-335m2.2	100	81.081	Stegastes_partitus
ENSSDUG00000003476	-	86	78.804	ENSTRUG00000021008	si:ch1073-335m2.2	99	78.804	Takifugu_rubripes
ENSSDUG00000003476	-	99	80.473	ENSTRUG00000024350	-	100	78.616	Takifugu_rubripes
ENSSDUG00000003476	-	97	80.899	ENSTNIG00000014666	si:ch1073-335m2.2	71	80.899	Tetraodon_nigroviridis
ENSSDUG00000003476	-	97	87.246	ENSTNIG00000010907	-	100	87.359	Tetraodon_nigroviridis
ENSSDUG00000003476	-	70	79.195	ENSTBEG00000003628	SPEN	70	81.967	Tupaia_belangeri
ENSSDUG00000003476	-	81	78.500	ENSTTRG00000015704	SPEN	73	81.967	Tursiops_truncatus
ENSSDUG00000003476	-	91	75.836	ENSUAMG00000009600	SPEN	96	82.584	Ursus_americanus
ENSSDUG00000003476	-	83	71.774	ENSUMAG00000021641	SPEN	95	79.333	Ursus_maritimus
ENSSDUG00000003476	-	88	100.000	ENSVVUG00000028951	SPEN	95	100.000	Vulpes_vulpes
ENSSDUG00000003476	-	90	74.627	ENSXETG00000023114	SPEN	99	80.337	Xenopus_tropicalis
ENSSDUG00000003476	-	98	77.720	ENSXCOG00000004516	si:ch1073-335m2.2	99	80.000	Xiphophorus_couchianus
ENSSDUG00000003476	-	96	97.207	ENSXMAG00000021384	-	90	89.695	Xiphophorus_maculatus
ENSSDUG00000003476	-	98	77.665	ENSXMAG00000029887	si:ch1073-335m2.2	99	80.814	Xiphophorus_maculatus